BLASTX nr result
ID: Cocculus23_contig00055701
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00055701
(275 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus] 181 7e-44
gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira] 181 9e-44
ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis... 181 1e-43
gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simpliciss... 181 1e-43
gb|ABD93715.1| RNA polymerase beta chain [Pachysandra procumbens] 180 2e-43
gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra] 179 3e-43
ref|YP_008993596.1| RNA polymerase beta' subunit (chloroplast) [... 179 5e-43
ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia trip... 178 6e-43
ref|YP_008993682.1| RNA polymerase beta' subunit (chloroplast) [... 178 6e-43
ref|YP_008993854.1| RNA polymerase beta' subunit (chloroplast) [... 178 6e-43
ref|YP_008993510.1| RNA polymerase beta' subunit (chloroplast) [... 178 6e-43
ref|YP_008993424.1| RNA polymerase beta' subunit (chloroplast) [... 178 6e-43
ref|YP_008993338.1| RNA polymerase beta' subunit (chloroplast) [... 178 6e-43
ref|YP_008993252.1| RNA polymerase beta' subunit (chloroplast) [... 178 6e-43
ref|YP_008993166.1| RNA polymerase beta' subunit (chloroplast) [... 178 6e-43
ref|YP_007474526.1| RNA polymerase beta subunit-2 (chloroplast) ... 178 6e-43
ref|YP_007474442.1| RNA polymerase beta subunit-2 (chloroplast) ... 178 6e-43
ref|YP_007474360.1| RNA polymerase beta subunit-2 (chloroplast) ... 178 6e-43
gb|AEX98324.1| RNA polymerase beta subunit-2 (chloroplast) [Magn... 178 6e-43
gb|AEX98241.1| RNA polymerase beta' subunit (chloroplast) [Magno... 178 6e-43
>gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus]
Length = 865
Score = 181 bits (460), Expect = 7e-44
Identities = 91/91 (100%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 642 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 701
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKRVEGWNERITRIL
Sbjct: 702 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 732
>gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira]
Length = 774
Score = 181 bits (459), Expect = 9e-44
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 556 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 615
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 616 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 646
>ref|YP_002836080.1| RNA polymerase beta'' subunit [Megaleranthis saniculifolia]
gi|226933872|gb|ACO92005.1| RNA polymerase beta'' subunit
[Megaleranthis saniculifolia]
Length = 1383
Score = 181 bits (458), Expect = 1e-43
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1085 QVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1144
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKRVEGWNERITRIL
Sbjct: 1145 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1175
>gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simplicissima]
Length = 861
Score = 181 bits (458), Expect = 1e-43
Identities = 90/91 (98%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 638 QVLIVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 697
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKRVEGWNERITRIL
Sbjct: 698 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 728
>gb|ABD93715.1| RNA polymerase beta chain [Pachysandra procumbens]
Length = 866
Score = 180 bits (457), Expect = 2e-43
Identities = 89/91 (97%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VH+DSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 643 QVLIVHIDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 702
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKRVEGWNERITRIL
Sbjct: 703 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 733
>gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra]
Length = 796
Score = 179 bits (455), Expect = 3e-43
Identities = 90/91 (98%), Positives = 90/91 (98%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL VHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 642 QVLTVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 701
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKRVEGWNERITRIL
Sbjct: 702 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 732
>ref|YP_008993596.1| RNA polymerase beta' subunit (chloroplast) [Magnolia odora]
Length = 1382
Score = 179 bits (453), Expect = 5e-43
Identities = 89/91 (97%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKRVEGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1174
>ref|YP_009026871.1| RNA polymerase beta'' subunit [Magnolia tripetala]
gi|608608394|gb|AHW51948.1| RNA polymerase beta'' subunit
[Magnolia tripetala]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_008993682.1| RNA polymerase beta' subunit (chloroplast) [Magnolia salicifolia]
Length = 1380
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1082 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1141
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1142 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1172
>ref|YP_008993854.1| RNA polymerase beta' subunit (chloroplast) [Magnolia sprengeri]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_008993510.1| RNA polymerase beta' subunit (chloroplast) [Magnolia liliifera]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_008993424.1| RNA polymerase beta' subunit (chloroplast) [Magnolia kobus]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_008993338.1| RNA polymerase beta' subunit (chloroplast) [Magnolia pyramidata]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_008993252.1| RNA polymerase beta' subunit (chloroplast) [Magnolia dealbata]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_008993166.1| RNA polymerase beta' subunit (chloroplast) [Magnolia cathcartii]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_007474526.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia grandiflora]
gi|372862833|gb|AEX98909.1| RNA polymerase beta subunit-2
(chloroplast) [Magnolia grandiflora]
gi|372863003|gb|AEX99077.1| RNA polymerase beta subunit-2
(chloroplast) [Magnolia grandiflora]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_007474442.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis
subsp. biloba] gi|372862494|gb|AEX98574.1| RNA polymerase
beta subunit-2 (chloroplast) [Magnolia officinalis subsp.
biloba] gi|372862579|gb|AEX98658.1| RNA polymerase beta
subunit-2 (chloroplast) [Magnolia officinalis subsp.
biloba] gi|372862664|gb|AEX98742.1| RNA polymerase beta
subunit-2 (chloroplast) [Magnolia officinalis subsp.
biloba]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>ref|YP_007474360.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia officinalis]
gi|372862411|gb|AEX98492.1| RNA polymerase beta subunit-2
(chloroplast) [Magnolia officinalis]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>gb|AEX98324.1| RNA polymerase beta subunit-2 (chloroplast) [Magnolia denudata]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174
>gb|AEX98241.1| RNA polymerase beta' subunit (chloroplast) [Magnolia liliiflora]
Length = 1382
Score = 178 bits (452), Expect = 6e-43
Identities = 88/91 (96%), Positives = 91/91 (100%)
Frame = -3
Query: 273 QVLLVHVDSLVIRSAKPYLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 94
QVL+VHVDSLVIRSAKP+LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV
Sbjct: 1084 QVLIVHVDSLVIRSAKPHLATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKV 1143
Query: 93 EQVLEVRSIDSISMNLEKRVEGWNERITRIL 1
EQVLEVRSIDSISMNLEKR+EGWNERITRIL
Sbjct: 1144 EQVLEVRSIDSISMNLEKRIEGWNERITRIL 1174