BLASTX nr result
ID: Cocculus23_contig00055506
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00055506
(261 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007015351.1| Pentatricopeptide repeat-containing protein,... 59 2e-13
emb|CAN69066.1| hypothetical protein VITISV_016070 [Vitis vinifera] 52 5e-10
ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containi... 52 5e-10
ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containi... 54 1e-09
ref|XP_004512307.1| PREDICTED: pentatricopeptide repeat-containi... 56 2e-09
ref|NP_001059279.1| Os07g0244400 [Oryza sativa Japonica Group] g... 53 3e-09
gb|AFK33630.1| unknown [Lotus japonicus] 56 3e-09
ref|XP_004246209.1| PREDICTED: pentatricopeptide repeat-containi... 54 4e-09
ref|XP_006657585.1| PREDICTED: pentatricopeptide repeat-containi... 52 4e-09
ref|XP_007158057.1| hypothetical protein PHAVU_002G120500g [Phas... 54 4e-09
ref|NP_001131386.1| hypothetical protein [Zea mays] gi|194691388... 51 2e-08
gb|EAZ03360.1| hypothetical protein OsI_25499 [Oryza sativa Indi... 50 2e-08
ref|XP_003557346.1| PREDICTED: pentatricopeptide repeat-containi... 52 3e-08
ref|XP_006841553.1| hypothetical protein AMTR_s00003p00175270 [A... 52 3e-08
ref|XP_002519945.1| pentatricopeptide repeat-containing protein,... 41 8e-08
ref|XP_004511479.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 62 8e-08
ref|XP_002324099.1| hypothetical protein POPTR_0017s12720g [Popu... 57 1e-07
ref|XP_006411944.1| hypothetical protein EUTSA_v10026762mg [Eutr... 62 1e-07
ref|XP_007203614.1| hypothetical protein PRUPE_ppa002292mg [Prun... 62 1e-07
ref|XP_004955884.1| PREDICTED: pentatricopeptide repeat-containi... 49 1e-07
>ref|XP_007015351.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
cacao] gi|508785714|gb|EOY32970.1| Pentatricopeptide
repeat-containing protein, putative [Theobroma cacao]
Length = 413
Score = 58.9 bits (141), Expect(2) = 2e-13
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = -2
Query: 158 EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
E+H+HI S P L + NRLLLM+ CGHLD A+ LFD+M ++D SW M
Sbjct: 114 ELHSHIRNSRIKPSLPLLNRLLLMHVSCGHLDIARHLFDQMLLRDFNSWAIM 165
Score = 42.4 bits (98), Expect(2) = 2e-13
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDMVRGACSH 142
DILRLMD+L L +PP +YAS++KEC +R R H
Sbjct: 79 DILRLMDSLSLPIPPDIYASLVKECTVTRHSRRALELH 116
>emb|CAN69066.1| hypothetical protein VITISV_016070 [Vitis vinifera]
Length = 543
Score = 52.4 bits (124), Expect(2) = 5e-10
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = -2
Query: 176 TQETW*EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTV--KDSISWTTM 3
TQ T ++ AHINRSG + NR+LLMY CG + +A+ +FDKM V K+SISW M
Sbjct: 257 TQAT--QLLAHINRSGLPLSSALLNRILLMYVSCGLIHTARHMFDKMNVLNKNSISWAIM 314
Score = 37.0 bits (84), Expect(2) = 5e-10
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRD 166
DILRLMD L L +PP +YAS++KE + D
Sbjct: 226 DILRLMDGLGLPIPPDIYASLIKESSTTGD 255
>ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Vitis vinifera]
Length = 414
Score = 52.4 bits (124), Expect(2) = 5e-10
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = -2
Query: 176 TQETW*EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTV--KDSISWTTM 3
TQ T ++ AHINRSG + NR+LLMY CG + +A+ +FDKM V K+SISW M
Sbjct: 94 TQAT--QLLAHINRSGLPLSSALLNRILLMYVSCGLIHTARHMFDKMNVLNKNSISWAIM 151
Score = 37.0 bits (84), Expect(2) = 5e-10
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRD 166
DILRLMD L L +PP +YAS++KE + D
Sbjct: 63 DILRLMDGLGLPIPPDIYASLIKESSTTGD 92
>ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Glycine max]
Length = 423
Score = 54.3 bits (129), Expect(2) = 1e-09
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = -2
Query: 170 ETW*EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
ET E+ HI++SG P L NR+L+M+ CG L++A+ +FDKM V+D +W T+
Sbjct: 114 ETAIELATHISKSGIKPPLPFLNRILVMFVSCGLLENARHMFDKMRVRDFNTWATL 169
Score = 33.9 bits (76), Expect(2) = 1e-09
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRD 166
DIL LM+AL VP +Y S++KEC S D
Sbjct: 83 DILHLMEALPFPVPIDIYTSLIKECTVSGD 112
>ref|XP_004512307.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Cicer arietinum]
Length = 418
Score = 55.8 bits (133), Expect(2) = 2e-09
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = -2
Query: 170 ETW*EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
ET E+H+HI RSG P L + NR+L+M+ CG L SA+ +FD+M V++ SW +
Sbjct: 107 ETATELHSHITRSGIGPPLTLLNRILIMFVSCGLLQSARHVFDEMPVRNFHSWAIL 162
Score = 31.6 bits (70), Expect(2) = 2e-09
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 252 ILRLMDALQLFVPPHVYASVLKECVDSRD 166
IL LMDAL +P +Y S++KEC S D
Sbjct: 77 ILPLMDALHFPIPIDIYTSLVKECTLSGD 105
>ref|NP_001059279.1| Os07g0244400 [Oryza sativa Japonica Group]
gi|24417179|dbj|BAC22540.1| putative pentatricopeptide
repeat-containing protein [Oryza sativa Japonica Group]
gi|50508329|dbj|BAD30147.1| putative pentatricopeptide
repeat-containing protein [Oryza sativa Japonica Group]
gi|113610815|dbj|BAF21193.1| Os07g0244400 [Oryza sativa
Japonica Group] gi|125599686|gb|EAZ39262.1| hypothetical
protein OsJ_23686 [Oryza sativa Japonica Group]
Length = 435
Score = 52.8 bits (125), Expect(2) = 3e-09
Identities = 27/55 (49%), Positives = 39/55 (70%), Gaps = 4/55 (7%)
Frame = -2
Query: 155 VHAHINRSGRFP----GLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
VHAHI +G+F L +ANRL+L YA CG + +A+++FD+M VK+ I+W TM
Sbjct: 130 VHAHI--AGKFAVSGLPLPLANRLVLAYAACGDIGAARQVFDEMPVKNGITWATM 182
Score = 33.9 bits (76), Expect(2) = 3e-09
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDM 163
D+LRL+DAL+L VY S+L++C D+ ++
Sbjct: 97 DVLRLLDALRLPPDEDVYVSLLRDCADAAEV 127
>gb|AFK33630.1| unknown [Lotus japonicus]
Length = 356
Score = 55.8 bits (133), Expect(2) = 3e-09
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = -2
Query: 158 EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
E+H HI SG P L NR+L+M+ CG LD A +LFD M VKD SW T+
Sbjct: 51 ELHTHIAHSGIKPPLSFINRILVMFVSCGLLDYACQLFDAMPVKDFNSWATL 102
Score = 30.8 bits (68), Expect(2) = 3e-09
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 252 ILRLMDALQLFVPPHVYASVLKECVDSRD 166
IL LMD L +P +Y S++KEC S D
Sbjct: 17 ILHLMDVLPFPIPIDIYTSLIKECTLSPD 45
>ref|XP_004246209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Solanum lycopersicum]
Length = 465
Score = 53.9 bits (128), Expect(2) = 4e-09
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = -2
Query: 158 EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
EV+ H+ +S P L + NRLLLM CG + A++LFDKM V++S SW M
Sbjct: 31 EVYEHVCKSDVIPSLPLLNRLLLMLVLCGCFEQARQLFDKMRVRNSQSWAAM 82
Score = 32.3 bits (72), Expect(2) = 4e-09
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 240 MDALQLFVPPHVYASVLKECVDSRD 166
MD+L +P VY S++KEC +SRD
Sbjct: 1 MDSLGFNIPVDVYVSLIKECTESRD 25
>ref|XP_006657585.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Oryza brachyantha]
Length = 437
Score = 52.4 bits (124), Expect(2) = 4e-09
Identities = 27/53 (50%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = -2
Query: 155 VHAHINRSGRFPGLQV--ANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
VHAHI S GL + ANRL+L YA CG +A+++FD+M VK+ I+W TM
Sbjct: 132 VHAHIAGSLAVSGLPLPLANRLVLAYAACGDTGTARQVFDEMPVKNGITWATM 184
Score = 33.9 bits (76), Expect(2) = 4e-09
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDM 163
D+LRL+DAL+L VY S+L++C D+ ++
Sbjct: 99 DVLRLLDALRLPPDEDVYVSLLRDCADAAEV 129
>ref|XP_007158057.1| hypothetical protein PHAVU_002G120500g [Phaseolus vulgaris]
gi|561031472|gb|ESW30051.1| hypothetical protein
PHAVU_002G120500g [Phaseolus vulgaris]
Length = 420
Score = 53.5 bits (127), Expect(2) = 4e-09
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = -2
Query: 170 ETW*EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
ET E++ HI++S P L NR+L+M+ CG L++A+ +F+KM V+D SW T+
Sbjct: 111 ETAIELYTHISKSDIKPPLPFLNRILIMFVSCGMLENARHMFEKMRVRDFNSWATL 166
Score = 32.7 bits (73), Expect(2) = 4e-09
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -1
Query: 258 IDILRLMDALQLFVPPHVYASVLKECVDSRD 166
+DIL LMDAL + +Y S++KEC S D
Sbjct: 79 LDILHLMDALPFPITIDIYTSLIKECTVSGD 109
>ref|NP_001131386.1| hypothetical protein [Zea mays] gi|194691388|gb|ACF79778.1| unknown
[Zea mays] gi|414884126|tpg|DAA60140.1| TPA:
hypothetical protein ZEAMMB73_895402 [Zea mays]
Length = 438
Score = 50.8 bits (120), Expect(2) = 2e-08
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = -2
Query: 155 VHAHINRSGRFPGLQ--VANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
VHAHI GL VANRLLL YA CG +++A+++FD M + ++W TM
Sbjct: 130 VHAHITARRASDGLPSPVANRLLLSYAACGDIEAARRVFDGMPTTNGMAWATM 182
Score = 33.5 bits (75), Expect(2) = 2e-08
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDM 163
D+LRLMDAL + +Y S+L+EC D+ ++
Sbjct: 97 DVLRLMDALGIPPDEDIYISLLRECADAAEV 127
>gb|EAZ03360.1| hypothetical protein OsI_25499 [Oryza sativa Indica Group]
Length = 436
Score = 50.4 bits (119), Expect(2) = 2e-08
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 4/55 (7%)
Frame = -2
Query: 155 VHAHINRSGRFP----GLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
VHAHI +G+F L +ANRL+L YA CG + +A+++FD+ VK+ I+W TM
Sbjct: 131 VHAHI--AGKFAVSGLPLPLANRLVLAYAACGDIGAARQVFDETPVKNGITWATM 183
Score = 33.9 bits (76), Expect(2) = 2e-08
Identities = 14/31 (45%), Positives = 23/31 (74%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDM 163
D+LRL+DAL+L VY S+L++C D+ ++
Sbjct: 98 DVLRLLDALRLPPDEDVYVSLLRDCADAAEV 128
>ref|XP_003557346.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31790-like [Brachypodium distachyon]
Length = 435
Score = 51.6 bits (122), Expect(2) = 3e-08
Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = -2
Query: 155 VHAHI-NRSGRFPGLQ-VANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
VHAHI R F L+ +ANRLL YA CG +A+K+FD+M VKD I+W TM
Sbjct: 130 VHAHIAGRRDAFGLLRPLANRLLHSYASCGDTAAARKVFDEMPVKDDIAWATM 182
Score = 32.0 bits (71), Expect(2) = 3e-08
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDM 163
D+LRLMDALQ+ VY S+L++ D+ ++
Sbjct: 97 DVLRLMDALQVAPDEAVYVSLLRDSADAAEV 127
>ref|XP_006841553.1| hypothetical protein AMTR_s00003p00175270 [Amborella trichopoda]
gi|548843574|gb|ERN03228.1| hypothetical protein
AMTR_s00003p00175270 [Amborella trichopoda]
Length = 327
Score = 51.6 bits (122), Expect(2) = 3e-08
Identities = 20/52 (38%), Positives = 36/52 (69%)
Frame = -2
Query: 158 EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
E+HAHIN++ +PG+ + N+++LMY C A ++FDKM+ +++ +W M
Sbjct: 31 EIHAHINKTSLYPGIHIENQIILMYMACRCPTLAYQVFDKMSHRNTDTWQFM 82
Score = 32.0 bits (71), Expect(2) = 3e-08
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 240 MDALQLFVPPHVYASVLKECVDSRDMVRGACSH 142
M +LQ+ + P Y+S+LKEC S+ +V G+ H
Sbjct: 1 MYSLQIPLTPIAYSSLLKECTSSKSLVEGSEIH 33
>ref|XP_002519945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540991|gb|EEF42549.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 403
Score = 41.2 bits (95), Expect(2) = 8e-08
Identities = 20/34 (58%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = -2
Query: 110 VANRLLLMYARCGHLDSAQKLFDKMTV-KDSISW 12
+ +RLLLM+ CG LD A+ LFDKM + KD ISW
Sbjct: 111 LVHRLLLMHVSCGQLDIARNLFDKMPLKKDFISW 144
Score = 40.8 bits (94), Expect(2) = 8e-08
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDMVRGACSH 142
DI+RLMD+L +PP +Y S++KEC + D C H
Sbjct: 59 DIMRLMDSLCHPIPPDIYTSLIKECTLTSDSTEALCLH 96
>ref|XP_004511479.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g37170-like [Cicer arietinum]
Length = 700
Score = 62.0 bits (149), Expect = 8e-08
Identities = 34/77 (44%), Positives = 42/77 (54%)
Frame = -2
Query: 233 LFSYLCHHMSMLLS*KNALTQETW*EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQ 54
L + HH S+ L K VHAH S PG+ ++NRLL MY +CG L AQ
Sbjct: 65 LIAACLHHRSLELGRK----------VHAHTKASNFIPGIFISNRLLHMYVKCGGLIDAQ 114
Query: 53 KLFDKMTVKDSISWTTM 3
LFD+M+ KD SW TM
Sbjct: 115 SLFDEMSQKDLCSWNTM 131
>ref|XP_002324099.1| hypothetical protein POPTR_0017s12720g [Populus trichocarpa]
gi|222867101|gb|EEF04232.1| hypothetical protein
POPTR_0017s12720g [Populus trichocarpa]
Length = 676
Score = 57.4 bits (137), Expect(2) = 1e-07
Identities = 27/52 (51%), Positives = 34/52 (65%)
Frame = -2
Query: 158 EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
+VH HI SG PGL + NRLL MYA+C L +QKLFD+M +D SW +
Sbjct: 91 KVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNIL 142
Score = 24.3 bits (51), Expect(2) = 1e-07
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Frame = -1
Query: 246 RLMDALQLF-----VPPHVYASVLKECVDSRDMVRGACSHQ 139
RL +ALQ+ VY+++++ C+ SR + +G HQ
Sbjct: 54 RLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKVHQ 94
>ref|XP_006411944.1| hypothetical protein EUTSA_v10026762mg [Eutrema salsugineum]
gi|557113114|gb|ESQ53397.1| hypothetical protein
EUTSA_v10026762mg [Eutrema salsugineum]
Length = 694
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = -2
Query: 158 EVHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
+VH HI SG PG+ + NRLL MYA+CG L A+KLFD+M KD SW M
Sbjct: 109 KVHEHIKNSGFVPGVVICNRLLGMYAKCGSLIDARKLFDEMPNKDVCSWNIM 160
>ref|XP_007203614.1| hypothetical protein PRUPE_ppa002292mg [Prunus persica]
gi|462399145|gb|EMJ04813.1| hypothetical protein
PRUPE_ppa002292mg [Prunus persica]
Length = 691
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = -2
Query: 155 VHAHINRSGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
VHAH SG PGL + NRL+ +YA+CG L AQK+FD+M+ +D SW TM
Sbjct: 107 VHAHTKVSGFVPGLFICNRLIDLYAKCGSLVDAQKVFDEMSERDLCSWNTM 157
>ref|XP_004955884.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18520-like [Setaria italica]
Length = 444
Score = 48.9 bits (115), Expect(2) = 1e-07
Identities = 24/58 (41%), Positives = 38/58 (65%), Gaps = 7/58 (12%)
Frame = -2
Query: 155 VHAHINR-------SGRFPGLQVANRLLLMYARCGHLDSAQKLFDKMTVKDSISWTTM 3
VHAH+ R G P L ++NR+LL YA CG + +A+++FD+M ++S++W TM
Sbjct: 130 VHAHLARRCACAPAGGGLP-LPLSNRVLLSYAACGDIGAARRVFDEMPARNSMAWATM 186
Score = 32.3 bits (72), Expect(2) = 1e-07
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = -1
Query: 255 DILRLMDALQLFVPPHVYASVLKECVDSRDM 163
D+LRLMDAL L VY S+L++C S ++
Sbjct: 97 DVLRLMDALGLPPDEDVYISLLRDCASSAEV 127