BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00055039
         (677 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    67   5e-09
gb|ABK28243.1| unknown [Arabidopsis thaliana]                          67   5e-09
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali...    67   5e-09
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript...    65   2e-08
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00...    59   1e-06
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part...    58   2e-06
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    57   4e-06
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...    57   7e-06
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    56   9e-06

>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
 Frame = +3

Query: 183 FLIKSAWNEMR-KKRDVPWVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA*RLRRMGMSID 359
           F     W+ +  +   VPW   VWFK  NH+P+HAF  W + +NRL T  RL+  G+SI 
Sbjct: 111 FSAPRTWSALHPQSHTVPWHKAVWFK--NHVPKHAFICWVVAWNRLHTRDRLQNWGLSIP 168

Query: 360 MKCHLRWNAREHTDNLRCCSWQIR-RGRNWQREA---------------KWIMKHFKKSE 491
            +C L      H D+     ++ +  G  W+                   W++    + +
Sbjct: 169 AECLL---CNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLMDCLNWLLSP-SREK 224

Query: 492 EIAMVVKLAFQAVVNQIWYERRNINRRRFQNKSRTVSMILDD 617
            I ++++LAF + V  IW ER   N+R     SR+   IL D
Sbjct: 225 NICLIIRLAFHSCVYAIWRER---NQRLHSGVSRSTESILKD 263


>gb|ABK28243.1| unknown [Arabidopsis thaliana]
          Length = 297

 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
 Frame = +3

Query: 183 FLIKSAWNEMR-KKRDVPWVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA*RLRRMGMSID 359
           F     W+ +  +   VPW   VWFK  NH+P+HAF  W + +NRL T  RL+  G+SI 
Sbjct: 111 FSAPRTWSALHPQSHTVPWHKAVWFK--NHVPKHAFICWVVAWNRLHTRDRLQNWGLSIP 168

Query: 360 MKCHLRWNAREHTDNLRCCSWQIR-RGRNWQREA---------------KWIMKHFKKSE 491
            +C L      H D+     ++ +  G  W+                   W++    + +
Sbjct: 169 AECLL---CNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLMDCLNWLLSP-SREK 224

Query: 492 EIAMVVKLAFQAVVNQIWYERRNINRRRFQNKSRTVSMILDD 617
            I ++++LAF + V  IW ER   N+R     SR+   IL D
Sbjct: 225 NICLIIRLAFHSCVYAIWRER---NQRLHSGVSRSTESILKD 263


>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
          Length = 296

 Score = 67.0 bits (162), Expect = 5e-09
 Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 17/162 (10%)
 Frame = +3

Query: 183 FLIKSAWNEMR-KKRDVPWVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA*RLRRMGMSID 359
           F     W+ +  +   VPW   VWFK  NH+P+HAF  W + +NRL T  RL+  G+SI 
Sbjct: 111 FSAPRTWSALHPQSHTVPWHKAVWFK--NHVPKHAFICWVVAWNRLHTRDRLQNWGLSIP 168

Query: 360 MKCHLRWNAREHTDNLRCCSWQIR-RGRNWQREA---------------KWIMKHFKKSE 491
            +C L      H D+     ++ +  G  W+                   W++    + +
Sbjct: 169 AECLL---CNAHDDSRAHLFFECQFSGVVWRFFTASTNLNPPAQLMDCLNWLLSP-SREK 224

Query: 492 EIAMVVKLAFQAVVNQIWYERRNINRRRFQNKSRTVSMILDD 617
            I ++++LAF + V  IW ER   N+R     SR+   IL D
Sbjct: 225 NICLIIRLAFHSCVYAIWRER---NQRLHSGVSRSTESILKD 263


>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 320

 Score = 65.5 bits (158), Expect = 2e-08
 Identities = 45/122 (36%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
 Frame = +3

Query: 228 VPWVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA*RLRRMGMSIDMKCHLRWNAREHTDNL 407
           VPW   VWFK  NH+P+HAF  W + +NRL T  RLR  G+SI   C L  +  E   +L
Sbjct: 149 VPWYKAVWFK--NHVPKHAFICWVVAWNRLHTRDRLRSWGLSIPAVCLLCNSHDESRAHL 206

Query: 408 --RC----CSWQIRRGR-NWQREAK------WIMKHFKKSEEIAMVVKLAFQAVVNQIWY 548
              C      W+   GR N    A+      W++    + +   ++++LAFQA V  IW 
Sbjct: 207 FFECPFCGAVWRFFTGRANLFPPAQLMYCLIWLLNP-SRDKNTTLIIRLAFQAYVYAIWR 265

Query: 549 ER 554
           ER
Sbjct: 266 ER 267


>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
            thaliana]
          Length = 1253

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 47/170 (27%), Positives = 69/170 (40%), Gaps = 18/170 (10%)
 Frame = +3

Query: 159  WMRNSNGC--FLIKSAWNEMRKKRDVP-WVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA* 329
            W+ +   C  F     W  MR K+ V  W   VWFK    +P+HAF +W    NRLPT  
Sbjct: 894  WIVDDFTCHGFSAARTWEAMRPKKPVKDWTKSVWFK--GSVPKHAFNMWVSHLNRLPTRQ 951

Query: 330  RLRRMGMSIDMKCHLRWNAREHTDNL------RCCSWQIRRGR---------NWQREAKW 464
            RL   G++    C L  +  E  D+L          W++   R         +W     W
Sbjct: 952  RLAAWGVTTTTDCCLCSSRPESRDHLLLYCVFSAVIWKLVFFRLTPSQAIFNSWAELLSW 1011

Query: 465  IMKHFKKSEEIAMVVKLAFQAVVNQIWYERRNINRRRFQNKSRTVSMILD 614
                   S+  +++ K+A QA V  +W +R N+          TV   +D
Sbjct: 1012 --TRINSSKAPSLLRKIAAQASVFHLWKQRNNVLHNSIFISPATVFHFID 1059


>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
           gi|482569649|gb|EOA33837.1| hypothetical protein
           CARUB_v10021318mg, partial [Capsella rubella]
          Length = 290

 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 39/124 (31%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
 Frame = +3

Query: 228 VPWVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA*RLRRMGMSIDMKCHLRWNAREHTDNL 407
           VPW   VWFK +  IP+HAF  W ++ NRL T  RLR  GM++  +C L  ++ E   +L
Sbjct: 111 VPWFKSVWFKER--IPKHAFISWVVIRNRLTTRDRLRGWGMNVPSECLLCTSSAESRLHL 168

Query: 408 RC-CSW------------QIRRGRNWQREAKWIMKHFKKSEEIAMVVKLAFQAVVNQIWY 548
              C++             +     ++    W+     +S+++  + KL FQAVV  +W 
Sbjct: 169 FFECAYSHEVWSSFFTHPSLSPPAMFEDIVAWVRS--SRSKKLRTICKLIFQAVVYGLWR 226

Query: 549 ERRN 560
           ER +
Sbjct: 227 ERNS 230


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 57.4 bits (137), Expect = 4e-06
 Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 13/150 (8%)
 Frame = +3

Query: 228 VPWVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA*RLRRMGMSIDMKCHLRWNAREHTDNL 407
           VPW   VWFK +  IP+HAF  W   + RL T  RL + G++I   C L     E  D+L
Sbjct: 152 VPWQKSVWFKDR--IPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNVVDETHDHL 209

Query: 408 --RC-------CSWQIRRGRN----WQREAKWIMKHFKKSEEIAMVVKLAFQAVVNQIWY 548
             +C         + IR G      +     W +K    S+ +++++KL FQA V  IW 
Sbjct: 210 FFQCQFSNEIWSFFMIRAGMTPPHLFGPILLW-LKSASSSKNLSLIIKLLFQASVYLIWR 268

Query: 549 ERRNINRRRFQNKSRTVSMILDDDSNQVSA 638
           ER   N R     SRT   I+ +    + A
Sbjct: 269 ER---NCRIHTTHSRTPPTIIKEVQQLIRA 295


>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score = 56.6 bits (135), Expect = 7e-06
 Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 18/170 (10%)
 Frame = +3

Query: 153 NFWMRNSNGCFL----IKSAWNEMR-KKRDVPWVHLVWFKTKNHIPRHAFTLWRLMYNRL 317
           +F  RN+ G +L     +  W ++R     VPW  +VWFK   +IPR +   W     RL
Sbjct: 95  SFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFK--EYIPRFSLITWMSFLERL 152

Query: 318 PTA*RLRRMGMSIDMKCHLRWNARE-HTDNLRCCS-----WQIRRGR-------NWQREA 458
           PT  RLR  GM+I     L  N  E H      CS     W+    +            +
Sbjct: 153 PTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPSPPFGLPAAS 212

Query: 459 KWIMKHFKKSEEIAMVVKLAFQAVVNQIWYERRNINRRRFQNKSRTVSMI 608
            WI++   +S     ++KL  Q+ V  +W ER   N R F + S + S +
Sbjct: 213 SWILQLPLRSHS-TTILKLLLQSAVYHVWKER---NARIFTSISSSASSL 258


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 56.2 bits (134), Expect = 9e-06
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 16/166 (9%)
 Frame = +3

Query: 183 FLIKSAWNEMRKK-RDVPWVHLVWFKTKNHIPRHAFTLWRLMYNRLPTA*RLRRMGMSID 359
           F  K  WN++RKK  +V W   VWF   +  P++ F  W  + NRL T  R++      D
Sbjct: 444 FSTKDTWNQVRKKSNEVAWYKGVWFS--HSTPKYQFCTWLALRNRLSTGYRMQLWNNGSD 501

Query: 360 MKCHLRWNAREHTDNL-RCCSW-------------QIRRGRNWQREAKWIMKHFKKSEEI 497
           +KC     + E  D+L   CS+             Q R   +WQ    +I +   +++ I
Sbjct: 502 VKCTFCSTSIETRDHLFFSCSYASAIWTAIAKNVLQHRFSTDWQTIVNYISE--TQTDRI 559

Query: 498 -AMVVKLAFQAVVNQIWYERRNINRRRFQNKSRTVSMILDDDSNQV 632
            + + +  FQ  V+ +W ER   N RR   + RT + ++     Q+
Sbjct: 560 RSFLSRYIFQLTVHTVWKER---NDRRHGEEPRTSANLISWMDKQI 602