BLASTX nr result
ID: Cocculus23_contig00055025
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00055025
(446 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 91 2e-16
emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera] 76 4e-12
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 75 7e-12
emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera] 75 9e-12
emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera] 73 5e-11
emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera] 72 6e-11
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 71 2e-10
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 70 2e-10
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 70 3e-10
emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera] 69 7e-10
gb|AAB82754.1| retrofit [Oryza longistaminata] 67 3e-09
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 67 3e-09
ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660... 66 4e-09
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 65 7e-09
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 65 7e-09
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 65 7e-09
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 64 2e-08
gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-... 64 2e-08
gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [... 64 2e-08
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 64 2e-08
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 90.5 bits (223), Expect = 2e-16
Identities = 40/50 (80%), Positives = 46/50 (92%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
+PN+RPFN +KLQFRS+PCTFLG SLN KGYKCL+P+G ILISRDVIFDE
Sbjct: 736 YPNLRPFNHHKLQFRSIPCTFLGYSLNHKGYKCLSPNGNILISRDVIFDE 785
>emb|CAN68623.1| hypothetical protein VITISV_010681 [Vitis vinifera]
Length = 846
Score = 76.3 bits (186), Expect = 4e-12
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
FPN+RP+NT+KLQ+RS CTFLG SL KGYKC+ +G++ ISRDVIF+E
Sbjct: 335 FPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMFSNGRVYISRDVIFNE 384
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 75.5 bits (184), Expect = 7e-12
Identities = 32/50 (64%), Positives = 42/50 (84%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
FPN+RP+NT+KLQ+RS CTFLG SL KGYKC++ +G++ IS DVIF+E
Sbjct: 753 FPNLRPYNTHKLQYRSEECTFLGYSLKHKGYKCMSSNGRVYISHDVIFNE 802
>emb|CAN66884.1| hypothetical protein VITISV_000961 [Vitis vinifera]
Length = 685
Score = 75.1 bits (183), Expect = 9e-12
Identities = 35/50 (70%), Positives = 40/50 (80%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
+PN RPFN +KLQFRS CTF+G SLN KGYK L +GK+ ISRDVIFDE
Sbjct: 367 YPNTRPFNKHKLQFRSTVCTFMGYSLNHKGYKRLDSNGKLYISRDVIFDE 416
>emb|CAN64002.1| hypothetical protein VITISV_023116 [Vitis vinifera]
Length = 1211
Score = 72.8 bits (177), Expect = 5e-11
Identities = 31/50 (62%), Positives = 41/50 (82%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
FPN+RP+NT+KLQ+ S CTFLG SL KGY C++ +G++ ISRDVIF+E
Sbjct: 574 FPNLRPYNTHKLQYXSEECTFLGYSLKHKGYXCMSSNGRVYISRDVIFNE 623
>emb|CAN83392.1| hypothetical protein VITISV_041406 [Vitis vinifera]
Length = 1262
Score = 72.4 bits (176), Expect = 6e-11
Identities = 31/50 (62%), Positives = 38/50 (76%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
FP++RP+N +KL FRS PCTFLG S KGYKCL G++ ISR V+FDE
Sbjct: 548 FPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVVFDE 597
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 70.9 bits (172), Expect = 2e-10
Identities = 31/50 (62%), Positives = 37/50 (74%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
FP++RP+N +KL FRS PCTFLG S KGYKCL G++ ISR V FDE
Sbjct: 794 FPHLRPYNKHKLDFRSSPCTFLGYSSKHKGYKCLNQQGRMFISRSVXFDE 843
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 70.5 bits (171), Expect = 2e-10
Identities = 33/51 (64%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPD-GKILISRDVIFDE 295
+P++RP+NT+KLQFRS CTFLG S KG+KCL P G++ ISRDVIFDE
Sbjct: 687 WPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDE 737
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 70.1 bits (170), Expect = 3e-10
Identities = 32/51 (62%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPD-GKILISRDVIFDE 295
+PN+RP+N +KLQFRS CTFLG S KG+KCL P G++ ISRDV+FDE
Sbjct: 685 WPNLRPYNKHKLQFRSTTCTFLGYSTLHKGFKCLDPSTGRVYISRDVVFDE 735
>emb|CAN83839.1| hypothetical protein VITISV_023230 [Vitis vinifera]
Length = 731
Score = 68.9 bits (167), Expect = 7e-10
Identities = 32/50 (64%), Positives = 39/50 (78%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
FP++RP+N++KLQFRS C FLG S KGY CL P GKI ISR+VIF+E
Sbjct: 100 FPHLRPYNSHKLQFRSSKCLFLGYSSTHKGYLCLHPFGKIYISRNVIFNE 149
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 67.0 bits (162), Expect = 3e-09
Identities = 30/51 (58%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+P++RP+NT+KLQFRS C FLG S + KG+KCL G++ ISRDV+FDE
Sbjct: 687 WPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDE 737
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 67.0 bits (162), Expect = 3e-09
Identities = 30/51 (58%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+P++RP+NT+KLQFRS C FLG S + KG+KCL G++ ISRDV+FDE
Sbjct: 687 WPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDE 737
>ref|XP_006580845.1| PREDICTED: uncharacterized protein LOC102660325 [Glycine max]
Length = 868
Score = 66.2 bits (160), Expect = 4e-09
Identities = 29/50 (58%), Positives = 37/50 (74%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPDGKILISRDVIFDE 295
FP +RP+N++KL +RS C FLG S KGYKCL P+G I IS+DV+F E
Sbjct: 798 FPFLRPYNSHKLDYRSQECIFLGYSTAHKGYKCLAPNGHIYISKDVLFQE 847
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 65.5 bits (158), Expect = 7e-09
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+PN+RP+N +KLQFRS C FLG S KG+KCL G+I ISRDV+FDE
Sbjct: 681 WPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDE 731
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 65.5 bits (158), Expect = 7e-09
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+PN+RP+N +KLQFRS C FLG S KG+KCL G+I ISRDV+FDE
Sbjct: 714 WPNLRPYNNHKLQFRSKRCVFLGFSTMHKGFKCLEVSTGRIYISRDVVFDE 764
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 65.5 bits (158), Expect = 7e-09
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCLTPD-GKILISRDVIFDE 295
+P++RP+N KLQFRS CTFLG S KG+KCL P G++ IS DVIFDE
Sbjct: 485 WPHLRPYNARKLQFRSKQCTFLGYSPLHKGFKCLDPSTGRVYISHDVIFDE 535
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 64.3 bits (155), Expect = 2e-08
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+PN+RP+N +KLQFRS C FLG S KG+KCL G+I ISRDV+FDE
Sbjct: 687 WPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDE 737
>gb|AAX96308.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77548933|gb|ABA91730.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1094
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/51 (58%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+PN+RP+N +KLQFRS C FLG S KG+KCL G++ ISRDV+FDE
Sbjct: 368 WPNLRPYNNHKLQFRSKRCVFLGFSNMHKGFKCLEVSTGRVYISRDVVFDE 418
>gb|AAN04167.1| Putative copia-like retrotransposon polyprotein [Oryza sativa
Japonica Group] gi|31431217|gb|AAP53032.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1042
Score = 64.3 bits (155), Expect = 2e-08
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+PN+RP+N +KLQFRS+ C FLG S GYKCL G+I I RDV+FDE
Sbjct: 580 WPNLRPYNAHKLQFRSMQCVFLGPSHTHNGYKCLDIATGRIYICRDVVFDE 630
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 64.3 bits (155), Expect = 2e-08
Identities = 31/51 (60%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Frame = -3
Query: 444 FPNIRPFNTNKLQFRSLPCTFLGCSLNDKGYKCL-TPDGKILISRDVIFDE 295
+PN+RP+NT+KLQFRS C FLG S KG+KCL G++ ISRDV FDE
Sbjct: 564 WPNLRPYNTHKLQFRSKQCVFLGFSNLHKGFKCLEVATGQVYISRDVTFDE 614