BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00054940
         (380 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9D...    62   1e-07
gb|AGC67029.1| replicase [Shallot virus X]                             57   3e-06
ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575...    57   3e-06
gb|AHB87051.1| putative RNA replicase, partial [Escobaria virus]       55   8e-06
ref|YP_004659200.1| replication-associated polyprotein [Blackber...    55   8e-06

>ref|NP_068549.1| replicase [Botrytis virus F] gi|81968259|sp|Q9DRA1.1|RDRP_BOTVF
            RecName: Full=RNA replication protein; Includes: RecName:
            Full=RNA-directed RNA polymerase; Includes: RecName:
            Full=Helicase; Includes: RecName: Full=Methyltransferase
            gi|10801178|gb|AAG23416.1|AF238884_2 replicase [Botrytis
            virus F]
          Length = 1896

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 35/121 (28%), Positives = 56/121 (46%)
 Frame = +3

Query: 18   IKITLKNQVIKKDEKRHKREAIPGQLVHEYDVRQTLLDAPYALFLEDELIDAFPANFLFY 197
            IK+ +K Q +KK EK    +A  GQ +  +     L   PYA +++  +    P +   +
Sbjct: 1590 IKLFIKGQTVKKLEKMGS-DATAGQSIASFRAEVLLAWGPYARYIDRRIRALLPPHVYIH 1648

Query: 198  RRMSPQEFIDKYQARWRVDNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGFPADYVSEYI 377
             R + ++F     A W         D T +D   DA  +NF+  +MRR  FP D +  Y+
Sbjct: 1649 SRRTNEDFEKFVAAHWDHTRESTDGDYTAYDASQDATFVNFETLLMRRLDFPLDIIEAYV 1708

Query: 378  E 380
            E
Sbjct: 1709 E 1709


>gb|AGC67029.1| replicase [Shallot virus X]
          Length = 1719

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 36/114 (31%), Positives = 52/114 (45%)
 Frame = +3

Query: 33   KNQVIKKDEKRHKREAIPGQLVHEYDVRQTLLDAPYALFLEDELIDAFPANFLFYRRMSP 212
            K+Q +KK EK   R    GQ +  +     LL    AL+L  +     P N       +P
Sbjct: 1341 KSQWVKKLEKVGARFKA-GQTISAFKQEVVLLTTTMALYLRKKREQHQPDNVFIMCERTP 1399

Query: 213  QEFIDKYQARWRVDNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGFPADYVSEY 374
            ++F      +W  D   Y+SD T++D   DA  LNF++   R  G P D +S Y
Sbjct: 1400 EQFNAFVMTKWDFDRPNYTSDYTQYDQSQDAAFLNFEIRKARHLGVPEDVLSFY 1453


>ref|NP_620648.1| replicase [Shallot virus X] gi|548840|sp|Q04575.1|RDRP_SHVX RecName:
            Full=RNA replication protein; AltName: Full=194 kDa
            protein; Includes: RecName: Full=RNA-directed RNA
            polymerase; Includes: RecName: Full=Helicase
            gi|295079|gb|AAA47787.1| replicase [Shallot virus X]
          Length = 1718

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 36/114 (31%), Positives = 52/114 (45%)
 Frame = +3

Query: 33   KNQVIKKDEKRHKREAIPGQLVHEYDVRQTLLDAPYALFLEDELIDAFPANFLFYRRMSP 212
            K+Q +KK EK   R    GQ +  +     LL    AL+L  +     P N       +P
Sbjct: 1340 KSQWVKKLEKVGARFKA-GQTISAFKQEVVLLTTTMALYLRKKREQHQPDNVFIMCERTP 1398

Query: 213  QEFIDKYQARWRVDNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGFPADYVSEY 374
            ++F      +W  D   Y+SD T++D   DA  LNF++   R  G P D +S Y
Sbjct: 1399 EQFNAFVMTKWDFDRPNYTSDYTQYDQSQDAAFLNFEIRKARHLGVPEDVLSFY 1452


>gb|AHB87051.1| putative RNA replicase, partial [Escobaria virus]
          Length = 851

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
 Frame = +3

Query: 33  KNQVIKK-DEKRHKREAIPGQLVHEYDVRQTLLDAPYALFLEDELIDAFPANFLFYRRMS 209
           K+Q +KK D+   K +A  GQ +  +  +  LL    AL+L  +     P N       +
Sbjct: 514 KSQWVKKLDKVGFKFKA--GQTISAFKQQTVLLTTTLALYLRKKREQHQPDNVFIMCEKT 571

Query: 210 PQEFIDKYQARWRVDNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGFPADYVSEY 374
           P++F +    RW  D   Y+SD T++D   DA  LNF++   R  G P + V+ Y
Sbjct: 572 PEQFNEFVINRWNFDRPAYTSDYTQYDQSQDACFLNFELRKARHLGVPEEVVNFY 626


>ref|YP_004659200.1| replication-associated polyprotein [Blackberry virus E]
            gi|336139487|gb|AEI17897.1| replication-associated
            polyprotein [Blackberry virus E]
          Length = 1499

 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
 Frame = +3

Query: 33   KNQVIKKDEK-RHKREAIPGQLVHEYDVRQTLLDAPYALFLEDELIDAFPANFLFYRRMS 209
            K+Q +KK EK   K +A  GQ +  +     LL    AL+L  + ++  P N       +
Sbjct: 1165 KSQWVKKLEKVGFKFKA--GQTISAFKQSTVLLTTTMALYLRKKRLEHQPQNVFIMCEKT 1222

Query: 210  PQEFIDKYQARWRVDNGVYSSDVTRWDVGCDAGMLNFDVHVMRRCGFPADYVSEY 374
            P EF D    RW      Y+SD T++D   DA  LNF++   R  G P + +  Y
Sbjct: 1223 PAEFNDFVLNRWDFKTPSYTSDYTQYDQSQDAAFLNFELRKARHLGVPEEVLDFY 1277