BLASTX nr result
ID: Cocculus23_contig00054603
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00054603
(492 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002306200.1| hypothetical protein POPTR_0004s18470g [Popu... 114 1e-23
ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containi... 107 2e-21
ref|XP_007041747.1| Tetratricopeptide repeat (TPR)-like superfam... 97 3e-18
ref|XP_006412144.1| hypothetical protein EUTSA_v10024444mg [Eutr... 96 7e-18
ref|XP_002867090.1| pentatricopeptide repeat-containing protein ... 94 1e-17
gb|EXB24037.1| hypothetical protein L484_006069 [Morus notabilis] 92 1e-16
ref|XP_006283134.1| hypothetical protein CARUB_v10004161mg [Caps... 91 1e-16
ref|XP_006486706.1| PREDICTED: pentatricopeptide repeat-containi... 91 2e-16
ref|XP_006422555.1| hypothetical protein CICLE_v10030410mg [Citr... 90 4e-16
ref|NP_195239.1| pentatricopeptide repeat-containing protein [Ar... 90 4e-16
ref|XP_004290750.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-15
gb|EYU37981.1| hypothetical protein MIMGU_mgv1a023065mg, partial... 87 3e-15
ref|XP_007198997.1| hypothetical protein PRUPE_ppa002025mg [Prun... 81 2e-13
ref|XP_006845697.1| hypothetical protein AMTR_s00019p00238380 [A... 79 6e-13
ref|XP_002302824.2| hypothetical protein POPTR_0002s22590g [Popu... 73 4e-11
ref|XP_006469116.1| PREDICTED: uncharacterized protein LOC102612... 71 2e-10
ref|XP_002521252.1| pentatricopeptide repeat-containing protein,... 69 5e-10
ref|XP_003597735.1| Pentatricopeptide repeat-containing protein ... 69 7e-10
emb|CBI36755.3| unnamed protein product [Vitis vinifera] 69 7e-10
ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat... 69 7e-10
>ref|XP_002306200.1| hypothetical protein POPTR_0004s18470g [Populus trichocarpa]
gi|222849164|gb|EEE86711.1| hypothetical protein
POPTR_0004s18470g [Populus trichocarpa]
Length = 784
Score = 114 bits (286), Expect = 1e-23
Identities = 54/115 (46%), Positives = 79/115 (68%), Gaps = 4/115 (3%)
Frame = +2
Query: 158 SPETS-PPNKTKFPKPLNQR---ISRNGGKLITRAVIRSNDLSLTRTLCSYVNAGSLDEA 325
SPE + PP +F + ++ I R K + + R NDL++TR LC +V +G + A
Sbjct: 18 SPEQNKPPKAAQFKRKTTRKSPFIKRAQSKTSFKPLARPNDLNITRDLCGFVESGLMGNA 77
Query: 326 LSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
L +FEKM DTF+WNV+IRG++NNG + EAI+FY++ME G+++DNFT+PFVIK
Sbjct: 78 LDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIK 132
>ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product
[Vitis vinifera]
Length = 802
Score = 107 bits (267), Expect = 2e-21
Identities = 56/113 (49%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Frame = +2
Query: 158 SPETSPPNKTKFPKPL--NQRISRNGGKLITRAVIRSNDLSLTRTLCSYVNAGSLDEALS 331
+P+T+P + R RN L+ R N +SLTR L SYV G + AL
Sbjct: 27 TPQTNPDTDLILKPRIFKTARSKRNQSFLVER-----NSVSLTRALSSYVERGYMKNALD 81
Query: 332 LFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
LFE MR DTF+WNV+IRGF +NG + +A++FYH+MEF GV+ DNFTYPFVIK
Sbjct: 82 LFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRGDNFTYPFVIK 134
>ref|XP_007041747.1| Tetratricopeptide repeat (TPR)-like superfamily protein, putative
[Theobroma cacao] gi|508705682|gb|EOX97578.1|
Tetratricopeptide repeat (TPR)-like superfamily protein,
putative [Theobroma cacao]
Length = 810
Score = 96.7 bits (239), Expect = 3e-18
Identities = 48/116 (41%), Positives = 76/116 (65%), Gaps = 4/116 (3%)
Frame = +2
Query: 155 DSPETS----PPNKTKFPKPLNQRISRNGGKLITRAVIRSNDLSLTRTLCSYVNAGSLDE 322
D+PET+ K +F KP R +++ ++ +I +L LTR L ++V++GS++
Sbjct: 28 DAPETNRNPYAVTKPRFSKPTQLRRTQSR---TSQTLIEPKNLKLTRALPAFVDSGSMEN 84
Query: 323 ALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
ALSLFE+M D++ WN++I+ +NG + +AI F+H+MEF G + D FTYPFVIK
Sbjct: 85 ALSLFEEMNHWDSYTWNIIIKDLVDNGLFKQAINFFHRMEFEGARPDKFTYPFVIK 140
>ref|XP_006412144.1| hypothetical protein EUTSA_v10024444mg [Eutrema salsugineum]
gi|557113314|gb|ESQ53597.1| hypothetical protein
EUTSA_v10024444mg [Eutrema salsugineum]
Length = 804
Score = 95.5 bits (236), Expect = 7e-18
Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 3/119 (2%)
Frame = +2
Query: 143 CRSSDSPETSPPNKTKFPKPLNQRISRNGGKLITRA---VIRSNDLSLTRTLCSYVNAGS 313
C SS++ +T+ ++R S N ++ R + + NDL+L R L + ++G
Sbjct: 20 CVSSENHQTTGKRNWNRNLVFDRRFS-NPARIALRERSRLTKLNDLALKRALREFADSGL 78
Query: 314 LDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
+++AL LF++M D FVWNV+IRGF++ G Y E+++FY +M F G+KAD+FTYPFVIK
Sbjct: 79 MEDALHLFDEMNKADAFVWNVMIRGFASCGLYHESVQFYCRMVFAGIKADSFTYPFVIK 137
>ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297312926|gb|EFH43349.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 803
Score = 94.4 bits (233), Expect = 1e-17
Identities = 51/120 (42%), Positives = 79/120 (65%), Gaps = 4/120 (3%)
Frame = +2
Query: 143 CRSSDSPETSPPNK----TKFPKPLNQRISRNGGKLITRAVIRSNDLSLTRTLCSYVNAG 310
C SS++ +T+ ++F KP+ R+ +T+ + ND +LTR L + ++G
Sbjct: 20 CVSSENHQTTGKRSLEFDSRFSKPV--RLVLRDRYKVTKQL---NDPALTRALRGFADSG 74
Query: 311 SLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
+++AL LF++M DTFVWNV+I+GF++ G Y EA++ Y +M F GVKAD+FTYPFVIK
Sbjct: 75 LMEDALQLFDEMNKADTFVWNVMIKGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIK 134
>gb|EXB24037.1| hypothetical protein L484_006069 [Morus notabilis]
Length = 797
Score = 91.7 bits (226), Expect = 1e-16
Identities = 48/113 (42%), Positives = 71/113 (62%)
Frame = +2
Query: 152 SDSPETSPPNKTKFPKPLNQRISRNGGKLITRAVIRSNDLSLTRTLCSYVNAGSLDEALS 331
S+ T +T P P +R +N ++ D SL R + ++V++G + EAL
Sbjct: 22 SEKRLTDSKPRTSIPIPSCRRKPKN-------SIENRRDSSLRRAIRNHVDSGQMREALE 74
Query: 332 LFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
+FEKM +T+VWN++IRGF++NG + EAI FY +ME G++ADNFTY FVIK
Sbjct: 75 IFEKMDCSETYVWNLMIRGFTDNGLFFEAINFYRRMENQGIQADNFTYLFVIK 127
>ref|XP_006283134.1| hypothetical protein CARUB_v10004161mg [Capsella rubella]
gi|482551839|gb|EOA16032.1| hypothetical protein
CARUB_v10004161mg [Capsella rubella]
Length = 807
Score = 91.3 bits (225), Expect = 1e-16
Identities = 40/76 (52%), Positives = 58/76 (76%)
Frame = +2
Query: 263 NDLSLTRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQME 442
ND +LTR L + ++G +D+AL LF++M D +VWNV+IRG+++ G Y EA++FY +M
Sbjct: 63 NDPALTRALRGFADSGLMDDALQLFDEMNKADVYVWNVIIRGYTSCGFYIEAVQFYCRMV 122
Query: 443 FLGVKADNFTYPFVIK 490
G+KAD+FTYPFVIK
Sbjct: 123 LAGIKADSFTYPFVIK 138
>ref|XP_006486706.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Citrus sinensis]
Length = 810
Score = 90.9 bits (224), Expect = 2e-16
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Frame = +2
Query: 149 SSDSPETSPPNKTKFPKP---------LNQRISRN-----GGKLITRAVIRSNDLSLTRT 286
+S+SP P++ +F P N R S++ + ++ I +++ TR
Sbjct: 15 NSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRA 74
Query: 287 LCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADN 466
L V++GS++ A LFEKM DT++WNV+IRGF +NG + EA+EF+H+M G KAD
Sbjct: 75 LQELVSSGSMESACYLFEKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADY 134
Query: 467 FTYPFVIK 490
FTYPFVIK
Sbjct: 135 FTYPFVIK 142
>ref|XP_006422555.1| hypothetical protein CICLE_v10030410mg [Citrus clementina]
gi|557524489|gb|ESR35795.1| hypothetical protein
CICLE_v10030410mg [Citrus clementina]
Length = 810
Score = 89.7 bits (221), Expect = 4e-16
Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Frame = +2
Query: 149 SSDSPETSPPNKTKFPKP---------LNQRISRN-----GGKLITRAVIRSNDLSLTRT 286
+S+SP P++ +F P N R S++ + ++ I +++ TR
Sbjct: 15 NSNSPTRRNPSQKQFKIPETNPTPSFETNARSSKSTHIHKNQTITSKKSIGPRNITKTRA 74
Query: 287 LCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADN 466
L V++GS++ A LF+KM DT++WNV+IRGF +NG + EA+EF+H+M G KAD
Sbjct: 75 LQELVSSGSMESACYLFDKMSYLDTYIWNVVIRGFVDNGLFQEAVEFHHRMVCEGFKADY 134
Query: 467 FTYPFVIK 490
FTYPFVIK
Sbjct: 135 FTYPFVIK 142
>ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098809|sp|O49619.1|PP350_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g35130, chloroplastic; Flags: Precursor
gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis
thaliana] gi|7270464|emb|CAB80230.1| putative protein
[Arabidopsis thaliana] gi|332661071|gb|AEE86471.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 804
Score = 89.7 bits (221), Expect = 4e-16
Identities = 40/76 (52%), Positives = 57/76 (75%)
Frame = +2
Query: 263 NDLSLTRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQME 442
ND +LTR L + ++ +++AL LF++M D F+WNV+I+GF++ G Y EA++FY +M
Sbjct: 63 NDPALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMV 122
Query: 443 FLGVKADNFTYPFVIK 490
F GVKAD FTYPFVIK
Sbjct: 123 FAGVKADTFTYPFVIK 138
>ref|XP_004290750.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 803
Score = 88.2 bits (217), Expect = 1e-15
Identities = 40/73 (54%), Positives = 55/73 (75%)
Frame = +2
Query: 272 SLTRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLG 451
SL + L +V +GS+++AL +F+KM D + WN++IRGF +NG + EAIEFY +ME G
Sbjct: 63 SLKQALHDHVQSGSMEDALWVFDKMNKLDAYNWNIVIRGFVDNGMFREAIEFYQRMEMEG 122
Query: 452 VKADNFTYPFVIK 490
VK DN+TYPFVIK
Sbjct: 123 VKEDNYTYPFVIK 135
>gb|EYU37981.1| hypothetical protein MIMGU_mgv1a023065mg, partial [Mimulus
guttatus]
Length = 715
Score = 86.7 bits (213), Expect = 3e-15
Identities = 40/68 (58%), Positives = 51/68 (75%)
Frame = +2
Query: 287 LCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADN 466
L S VN+GSLD AL +FE M TFVWNV+IRG ++G +++AIEFY +M+F G K D
Sbjct: 2 LLSLVNSGSLDNALQMFETMIKSSTFVWNVIIRGLVDSGLFEKAIEFYRRMQFEGTKPDK 61
Query: 467 FTYPFVIK 490
FT+PFVIK
Sbjct: 62 FTFPFVIK 69
>ref|XP_007198997.1| hypothetical protein PRUPE_ppa002025mg [Prunus persica]
gi|462394397|gb|EMJ00196.1| hypothetical protein
PRUPE_ppa002025mg [Prunus persica]
Length = 727
Score = 80.9 bits (198), Expect = 2e-13
Identities = 35/59 (59%), Positives = 48/59 (81%)
Frame = +2
Query: 314 LDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
+++AL +FEKM DT+ WNV+IRG ++NG + EAI+FYH+M+ V+ADNFTYPFVIK
Sbjct: 1 MEDALWVFEKMNHLDTYYWNVMIRGLTDNGLFREAIDFYHRMQSEAVRADNFTYPFVIK 59
>ref|XP_006845697.1| hypothetical protein AMTR_s00019p00238380 [Amborella trichopoda]
gi|548848269|gb|ERN07372.1| hypothetical protein
AMTR_s00019p00238380 [Amborella trichopoda]
Length = 235
Score = 79.0 bits (193), Expect = 6e-13
Identities = 35/76 (46%), Positives = 53/76 (69%)
Frame = +2
Query: 263 NDLSLTRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQME 442
N S+ +L +++N+G + AL LF M+ D +WN++I+G+ NG + EAIEFY+QM+
Sbjct: 46 NYFSVPDSLHAFLNSGQTETALHLFHSMKTLDPLLWNIMIKGYVQNGFFHEAIEFYYQMQ 105
Query: 443 FLGVKADNFTYPFVIK 490
GV D+FTYPFV+K
Sbjct: 106 SNGVIPDHFTYPFVLK 121
>ref|XP_002302824.2| hypothetical protein POPTR_0002s22590g [Populus trichocarpa]
gi|550345610|gb|EEE82097.2| hypothetical protein
POPTR_0002s22590g [Populus trichocarpa]
Length = 647
Score = 73.2 bits (178), Expect = 4e-11
Identities = 34/72 (47%), Positives = 44/72 (61%)
Frame = +2
Query: 275 LTRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGV 454
LT + Y + GS+ A SLF D F+WNV+IRG +N Y AI Y QM LG+
Sbjct: 13 LTNLIAQYASLGSVSYAYSLFSSTPSADLFLWNVMIRGLVDNSHYHHAILLYKQMLRLGI 72
Query: 455 KADNFTYPFVIK 490
+ DNFT+PF+IK
Sbjct: 73 QPDNFTFPFIIK 84
>ref|XP_006469116.1| PREDICTED: uncharacterized protein LOC102612526 [Citrus sinensis]
Length = 1508
Score = 70.9 bits (172), Expect = 2e-10
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 13/121 (10%)
Frame = +2
Query: 167 TSPPNKTKFPKP------LNQRISRNGGKLITRAVIRS-----NDLSLTRTLCS-YVNAG 310
+SP +T+F P + Q + K + +RS +DL L L S Y + G
Sbjct: 490 SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 549
Query: 311 SLDEALSLFEKMRDP-DTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVKADNFTYPFVI 487
S+ A SLF + D D F+WNV+IR F +N +D +++ Y QM L + DNFT+PFV+
Sbjct: 550 SISHAFSLFSSVSDSCDIFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDNFTFPFVL 609
Query: 488 K 490
K
Sbjct: 610 K 610
>ref|XP_002521252.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539520|gb|EEF41108.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 173
Score = 69.3 bits (168), Expect = 5e-10
Identities = 32/83 (38%), Positives = 53/83 (63%)
Frame = +2
Query: 155 DSPETSPPNKTKFPKPLNQRISRNGGKLITRAVIRSNDLSLTRTLCSYVNAGSLDEALSL 334
D+P+T+P + + + + +++R N+L+LTR L +VN+GS++ AL L
Sbjct: 25 DAPKTTPIPDVLVNSRIGKSSQFHKHQSKKPSLVRPNNLNLTRELTGFVNSGSMNNALDL 84
Query: 335 FEKMRDPDTFVWNVLIRGFSNNG 403
FEK+ DT++WN++IRGF NNG
Sbjct: 85 FEKLNHSDTYIWNLVIRGFCNNG 107
>ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 620
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/71 (46%), Positives = 48/71 (67%)
Frame = +2
Query: 278 TRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGFSNNGSYDEAIEFYHQMEFLGVK 457
T+ + Y + SL A +LF+K+ + F+WNVLIRG++ NG +D AI YH+M G++
Sbjct: 86 TKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLR 145
Query: 458 ADNFTYPFVIK 490
DNFT PFV+K
Sbjct: 146 PDNFTLPFVLK 156
>emb|CBI36755.3| unnamed protein product [Vitis vinifera]
Length = 751
Score = 68.9 bits (167), Expect = 7e-10
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = +2
Query: 215 ISRNGGKLITRAVIRSN-DLSLTRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGF 391
+ R G +IT +VI+ LS C+Y ++G+L+ A S+F ++ P ++WN +I+G+
Sbjct: 21 LKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGY 80
Query: 392 SNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
S + S DEA+ Y +M G D+FT+PFV+K
Sbjct: 81 SISESPDEALTMYREMRQKGYAPDHFTFPFVLK 113
>ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 68.9 bits (167), Expect = 7e-10
Identities = 35/93 (37%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Frame = +2
Query: 215 ISRNGGKLITRAVIRSN-DLSLTRTLCSYVNAGSLDEALSLFEKMRDPDTFVWNVLIRGF 391
+ R G +IT +VI+ LS C+Y ++G+L+ A S+F ++ P ++WN +I+G+
Sbjct: 21 LKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGY 80
Query: 392 SNNGSYDEAIEFYHQMEFLGVKADNFTYPFVIK 490
S + S DEA+ Y +M G D+FT+PFV+K
Sbjct: 81 SISESPDEALTMYREMRQKGYAPDHFTFPFVLK 113