BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00054210
         (327 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB18345.1| RNA polymerase beta subunit, partial [Neoastelia ...   117   2e-24
ref|YP_004769939.1| RNA polymerase beta subunit (chloroplast) [W...   116   4e-24
ref|YP_004769804.1| RNA polymerase beta subunit (chloroplast) [W...   116   4e-24
ref|YP_001595500.1| RNA polymerase beta subunit [Lemna minor] gi...   116   4e-24
gb|AGW98452.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW98197.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW98112.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW97858.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW97603.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW97518.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW97263.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW97093.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW97008.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW96923.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW96838.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW96753.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW96414.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
gb|AGW96329.1| RNA polymerase beta subunit (chloroplast) [Ipomoe...   115   5e-24
ref|YP_005097866.1| RNA polymerase beta subunit (chloroplast) [C...   115   5e-24
ref|YP_004769622.1| RNA polymerase beta subunit (chloroplast) [S...   115   5e-24

>gb|AFB18345.1| RNA polymerase beta subunit, partial [Neoastelia spectabilis]
          Length = 1075

 Score =  117 bits (292), Expect = 2e-24
 Identities = 53/68 (77%), Positives = 57/68 (83%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           K   FG  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IHVRIGHWGS+E
Sbjct: 397 KLSYFGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHVRIGHWGSIE 456

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 457 SPFYEISE 464


>ref|YP_004769939.1| RNA polymerase beta subunit (chloroplast) [Wolffia australiana]
           gi|341834231|gb|AEK94500.1| RNA polymerase beta subunit
           [Wolffia australiana]
          Length = 1072

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           K    G  GV GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IHVRIGHWGS+E
Sbjct: 392 KLSYLGPGGVTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHVRIGHWGSIE 451

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 452 TPFYEISE 459


>ref|YP_004769804.1| RNA polymerase beta subunit (chloroplast) [Wolffiella lingulata]
           gi|341834147|gb|AEK94417.1| RNA polymerase beta subunit
           [Wolffiella lingulata]
          Length = 1072

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           K    G  GV GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IHVRIGHWGS+E
Sbjct: 392 KLSYLGPGGVTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHVRIGHWGSIE 451

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 452 TPFYEISE 459


>ref|YP_001595500.1| RNA polymerase beta subunit [Lemna minor]
           gi|182676567|sp|A9L988.1|RPOB_LEMMI RecName:
           Full=DNA-directed RNA polymerase subunit beta; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta; Short=RNA polymerase subunit beta
           gi|88696762|gb|ABD48487.1| RNA polymerase beta subunit
           [Lemna minor]
          Length = 1072

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           K    G  GV GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IHVRIGHWGS+E
Sbjct: 392 KLSYLGPGGVTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHVRIGHWGSIE 451

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 452 TPFYEISE 459


>gb|AGW98452.1| RNA polymerase beta subunit (chloroplast) [Ipomoea minutiflora]
          Length = 1062

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 384 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 443

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 444 SPFYEISE 451


>gb|AGW98197.1| RNA polymerase beta subunit (chloroplast) [Ipomoea tricolor]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW98112.1| RNA polymerase beta subunit (chloroplast) [Ipomoea ternifolia]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW97858.1| RNA polymerase beta subunit (chloroplast) [Ipomoea polpha]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW97603.1| RNA polymerase beta subunit (chloroplast) [Ipomoea orizabensis]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW97518.1| RNA polymerase beta subunit (chloroplast) [Ipomoea nil]
          Length = 1062

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 384 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 443

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 444 SPFYEISE 451


>gb|AGW97263.1| RNA polymerase beta subunit (chloroplast) [Ipomoea hederifolia]
          Length = 1062

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 384 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 443

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 444 SPFYEISE 451


>gb|AGW97093.1| RNA polymerase beta subunit (chloroplast) [Ipomoea dumetorum]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW97008.1| RNA polymerase beta subunit (chloroplast) [Ipomoea diamantinensis]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW96923.1| RNA polymerase beta subunit (chloroplast) [Ipomoea cairica]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW96838.1| RNA polymerase beta subunit (chloroplast) [Ipomoea argillicola]
           gi|546353883|gb|AGW97773.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea pes-caprae]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>gb|AGW96753.1| RNA polymerase beta subunit (chloroplast) [Ipomoea amnicola]
           gi|546353539|gb|AGW97433.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea murucoides]
           gi|546354055|gb|AGW97943.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea setosa]
          Length = 1062

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 384 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 443

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 444 SPFYEISE 451


>gb|AGW96414.1| RNA polymerase beta subunit (chloroplast) [Ipomoea batatas]
           gi|546352594|gb|AGW96499.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea batatas]
           gi|546354140|gb|AGW98027.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea splendor-sylvae]
          Length = 1062

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 384 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 443

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 444 SPFYEISE 451


>gb|AGW96329.1| RNA polymerase beta subunit (chloroplast) [Ipomoea batatas]
           gi|546352680|gb|AGW96584.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea trifida]
           gi|546354398|gb|AGW98282.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea trifida]
           gi|546354484|gb|AGW98367.1| RNA polymerase beta subunit
           (chloroplast) [Ipomoea cordatotriloba]
          Length = 1067

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           KF   G  G+ GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IH RIGHWGSLE
Sbjct: 389 KFSSLGPGGLTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHARIGHWGSLE 448

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 449 SPFYEISE 456


>ref|YP_005097866.1| RNA polymerase beta subunit (chloroplast) [Colocasia esculenta]
           gi|340536631|gb|AEK48398.1| RNA polymerase beta subunit
           (chloroplast) [Colocasia esculenta]
           gi|340536718|gb|AEK48484.1| RNA polymerase beta subunit
           (chloroplast) [Colocasia esculenta]
          Length = 1072

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           K    G  GV GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IHVRIGHWGS+E
Sbjct: 392 KLSYLGPGGVTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHVRIGHWGSIE 451

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 452 SPFYEISE 459


>ref|YP_004769622.1| RNA polymerase beta subunit (chloroplast) [Spirodela polyrhiza]
           gi|341834063|gb|AEK94334.1| RNA polymerase beta subunit
           [Spirodela polyrhiza]
          Length = 1072

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/68 (77%), Positives = 56/68 (82%)
 Frame = -1

Query: 204 KFELFGSWGVEGRTTSSRIRDIHPSHYGRICPIDRSEGINIGIIGSLVIHVRIGHWGSLE 25
           K    G  GV GRT S RIRDIHPSHYGRICPID SEGIN+G+IGSL IHVRIGHWGS+E
Sbjct: 392 KLSYLGPGGVTGRTASFRIRDIHPSHYGRICPIDTSEGINVGLIGSLAIHVRIGHWGSIE 451

Query: 24  IPFYEISE 1
            PFYEISE
Sbjct: 452 SPFYEISE 459