BLASTX nr result
ID: Cocculus23_contig00053962
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00053962
(272 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 83 2e-28
gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii] 74 4e-24
emb|CAN69462.1| hypothetical protein VITISV_002919 [Vitis vinifera] 70 2e-21
gb|ABB47665.1| retrotransposon protein, putative, unclassified, ... 52 2e-11
ref|NP_001174869.1| Os06g0583500 [Oryza sativa Japonica Group] g... 56 9e-11
gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group] 57 1e-10
gb|AAT47108.1| putative polyprotein [Oryza sativa Japonica Group] 50 4e-10
emb|CAN62394.1| hypothetical protein VITISV_021305 [Vitis vinifera] 51 5e-10
emb|CAN75041.1| hypothetical protein VITISV_027174 [Vitis vinifera] 51 2e-09
emb|CAN61929.1| hypothetical protein VITISV_014855 [Vitis vinifera] 51 2e-09
gb|EMT17614.1| DNA-directed RNA polymerase I subunit RPA2 [Aegil... 47 4e-09
emb|CAN80320.1| hypothetical protein VITISV_034560 [Vitis vinifera] 50 4e-09
emb|CAN70361.1| hypothetical protein VITISV_033646 [Vitis vinifera] 50 4e-09
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc... 48 1e-08
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ... 49 2e-08
emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera] 48 3e-08
emb|CAN79142.1| hypothetical protein VITISV_040460 [Vitis vinifera] 47 3e-08
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 45 4e-08
gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subc... 45 4e-08
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi... 52 6e-08
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 82.8 bits (203), Expect(2) = 2e-28
Identities = 35/42 (83%), Positives = 38/42 (90%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI*VAF 259
P+P+STKGGSRYYVSFIDDHTRYCWVYLMKH S+FF I AF
Sbjct: 547 PSPVSTKGGSRYYVSFIDDHTRYCWVYLMKHRSEFFEIYAAF 588
Score = 68.6 bits (166), Expect(2) = 2e-28
Identities = 32/41 (78%), Positives = 36/41 (87%)
Frame = +3
Query: 3 GNLQFHDISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
GNL+ DIS+CSGCK+AKFSALPFNRST VS +PFDL HSD
Sbjct: 503 GNLKTCDISDCSGCKLAKFSALPFNRSTSVSSSPFDLIHSD 543
>gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii]
Length = 732
Score = 74.3 bits (181), Expect(2) = 4e-24
Identities = 30/38 (78%), Positives = 35/38 (92%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P+P+ TKGGSRYYVSFIDD+TRYCWVYLMKH S+F +I
Sbjct: 63 PSPVPTKGGSRYYVSFIDDYTRYCWVYLMKHRSEFLDI 100
Score = 62.8 bits (151), Expect(2) = 4e-24
Identities = 30/52 (57%), Positives = 36/52 (69%)
Frame = +3
Query: 3 GNLQFHDISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSDGRDLHLFPQKG 158
G LQ DIS+C GCK+AKFSALPF++S +S+ PFDL HSD P KG
Sbjct: 19 GKLQTSDISDCCGCKLAKFSALPFSKSVSLSYAPFDLVHSDVWGPSPVPTKG 70
>emb|CAN69462.1| hypothetical protein VITISV_002919 [Vitis vinifera]
Length = 993
Score = 70.1 bits (170), Expect(2) = 2e-21
Identities = 30/45 (66%), Positives = 36/45 (80%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI*VAF*CS 268
P+ ++TKG S+YYVSFIDDHTRYCWVYLMKH DF ++ F CS
Sbjct: 447 PSXVATKGWSKYYVSFIDDHTRYCWVYLMKHRFDFIHVYTTF-CS 490
Score = 57.8 bits (138), Expect(2) = 2e-21
Identities = 27/41 (65%), Positives = 30/41 (73%)
Frame = +3
Query: 3 GNLQFHDISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
GN Q HDIS CSGCK+AKFSAL FN+S PFDL HS+
Sbjct: 403 GNFQTHDISYCSGCKLAKFSALLFNQSVSPFVAPFDLIHSN 443
>gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group] gi|78708691|gb|ABB47666.1|
retrotransposon protein, putative, unclassified,
expressed [Oryza sativa Japonica Group]
Length = 1682
Score = 52.4 bits (124), Expect(2) = 2e-11
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +2
Query: 137 TPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI*VAF 259
+P +KGG YYV F+DD++RY W+Y MKH S +I +F
Sbjct: 392 SPFPSKGGHNYYVIFVDDYSRYTWIYFMKHRSQLISIYQSF 432
Score = 41.6 bits (96), Expect(2) = 2e-11
Identities = 21/42 (50%), Positives = 23/42 (54%)
Frame = +3
Query: 33 CSGCKMAKFSALPFNRSTFVSFTPFDLSHSDGRDLHLFPQKG 158
C GCK+ K LP+ ST S PFDL HSD FP KG
Sbjct: 357 CKGCKLGKQVQLPYPSSTSRSSRPFDLVHSDVWGKSPFPSKG 398
>ref|NP_001174869.1| Os06g0583500 [Oryza sativa Japonica Group]
gi|255677175|dbj|BAH93597.1| Os06g0583500, partial
[Oryza sativa Japonica Group]
Length = 174
Score = 56.2 bits (134), Expect(2) = 9e-11
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P P ++KGG +YYV FIDD++RY W+Y MKH S +I
Sbjct: 136 PAPFASKGGHKYYVIFIDDYSRYTWIYFMKHRSQLLSI 173
Score = 35.8 bits (81), Expect(2) = 9e-11
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +3
Query: 3 GNLQFHDISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSDGRDLHLFPQKG 158
G++ +C+GCK+ K LP+ S + PFDL HSD F KG
Sbjct: 92 GHVSIDTTFDCTGCKLGKQIQLPYPISNSRTSCPFDLVHSDVWGPAPFASKG 143
>gb|AAT58770.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1419
Score = 56.6 bits (135), Expect(2) = 1e-10
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI*VAF 259
P P +KGG RYYV F+DD +RY W+Y MKH S+ + + +F
Sbjct: 704 PAPFHSKGGHRYYVIFVDDFSRYTWIYFMKHRSELYQVYKSF 745
Score = 35.0 bits (79), Expect(2) = 1e-10
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = +3
Query: 3 GNLQFHDISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
GN+ C GCK+ K LP+ S S +PF L HSD
Sbjct: 660 GNVSIETDFVCKGCKLGKQVQLPYRSSMSRSTSPFALVHSD 700
>gb|AAT47108.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1204
Score = 50.1 bits (118), Expect(2) = 4e-10
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI*VAF 259
P P +KGG RYY+ FIDD +R+ W+Y M H S+ I +F
Sbjct: 564 PAPFVSKGGHRYYIIFIDDFSRHTWIYFMTHRSEVLAIYKSF 605
Score = 39.7 bits (91), Expect(2) = 4e-10
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +3
Query: 24 ISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
++ C GCK+ K LP++ S VS PFDL HSD
Sbjct: 527 LNQCQGCKLGKQIQLPYHSSESVSKRPFDLVHSD 560
>emb|CAN62394.1| hypothetical protein VITISV_021305 [Vitis vinifera]
Length = 1287
Score = 50.8 bits (120), Expect(2) = 5e-10
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P+P+++ GGSRY+V FIDD++RY W++ MK S+ +I
Sbjct: 515 PSPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSI 552
Score = 38.5 bits (88), Expect(2) = 5e-10
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +3
Query: 21 DISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
DI C+ C++ K ALPFN S +S + F+L HSD
Sbjct: 477 DIFYCTSCQIGKQPALPFNNSESISHSIFELIHSD 511
>emb|CAN75041.1| hypothetical protein VITISV_027174 [Vitis vinifera]
Length = 1381
Score = 50.8 bits (120), Expect(2) = 2e-09
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P+P+++ GGSRY+V FIDD++RY W++ MK S+ +I
Sbjct: 548 PSPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSI 585
Score = 36.6 bits (83), Expect(2) = 2e-09
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 21 DISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
D +C+ C++ K ALPFN S +S + F+L HSD
Sbjct: 510 DNFDCTSCQLGKQPALPFNNSDSISKSIFELIHSD 544
>emb|CAN61929.1| hypothetical protein VITISV_014855 [Vitis vinifera]
Length = 1271
Score = 50.8 bits (120), Expect(2) = 2e-09
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P+P+++ GGSRY+V FIDD++RY W++ MK S+ +I
Sbjct: 540 PSPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSI 577
Score = 36.6 bits (83), Expect(2) = 2e-09
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 21 DISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
D +C+ C++ K ALPFN S +S + F+L HSD
Sbjct: 502 DNFDCTSCQLGKQPALPFNNSDSISKSIFELIHSD 536
>gb|EMT17614.1| DNA-directed RNA polymerase I subunit RPA2 [Aegilops tauschii]
Length = 1856
Score = 47.4 bits (111), Expect(2) = 4e-09
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P P +KGG RYY+ FIDD +RY +Y+MK S+ +I
Sbjct: 1349 PAPFDSKGGHRYYILFIDDFSRYTLLYIMKSRSEVLSI 1386
Score = 38.9 bits (89), Expect(2) = 4e-09
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 21 DIS-NCSGCKMAKFSALPFNRSTFVSFTPFDLSHSDGRDLHLFPQKG 158
D+S +C+GC++ K + LP+ S VS PFDL HSD F KG
Sbjct: 1310 DVSLHCNGCRLGKQTQLPYPTSESVSQRPFDLVHSDVWGPAPFDSKG 1356
>emb|CAN80320.1| hypothetical protein VITISV_034560 [Vitis vinifera]
Length = 1261
Score = 49.7 bits (117), Expect(2) = 4e-09
Identities = 19/38 (50%), Positives = 29/38 (76%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P P+++ GGSRY+V FIDD++RY W++ MK S+ +I
Sbjct: 458 PFPVASIGGSRYFVVFIDDYSRYSWIFPMKSRSEILSI 495
Score = 36.6 bits (83), Expect(2) = 4e-09
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 21 DISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
D +C+ C++ K ALPFN S +S + F+L HSD
Sbjct: 420 DNFDCTSCQLGKQPALPFNNSESISKSIFELIHSD 454
>emb|CAN70361.1| hypothetical protein VITISV_033646 [Vitis vinifera]
Length = 1013
Score = 49.7 bits (117), Expect(2) = 4e-09
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P+P+++ GGSRY+V FIDD++RY W++ MK S+ +I
Sbjct: 239 PSPVASIGGSRYFVVFIDDYSRYIWIFPMKSCSEILSI 276
Score = 36.6 bits (83), Expect(2) = 4e-09
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 21 DISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
DI C+ C++ K LPFN S +S + F+L HSD
Sbjct: 201 DIFYCTSCQLGKQPTLPFNNSESISNSIFELIHSD 235
>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 807
Score = 47.8 bits (112), Expect(2) = 1e-08
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 137 TPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFF 241
T S+ GG+++YVSFIDD +++ WVY +KH SD F
Sbjct: 488 TAPSSVGGNKFYVSFIDDFSKFTWVYSLKHKSDVF 522
Score = 37.0 bits (84), Expect(2) = 1e-08
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +3
Query: 18 HDISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
H S C C+ AK LP++RST VS P +L +SD
Sbjct: 449 HSESVCDACQKAKSHQLPYSRSTSVSTRPLELVYSD 484
>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2301
Score = 48.9 bits (115), Expect(2) = 2e-08
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI*VAF 259
P+P+ + +YYV ID+++RYCW+Y MK SDF +I +AF
Sbjct: 530 PSPVVSVQEFKYYVVLIDNYSRYCWMYPMKKKSDFHSIFIAF 571
Score = 35.0 bits (79), Expect(2) = 2e-08
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 27 SNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
S C C+MAK S LPF+ S FV+ P + H D
Sbjct: 494 SLCVSCQMAKSSRLPFSASQFVATRPLERIHCD 526
>emb|CAN74984.1| hypothetical protein VITISV_035210 [Vitis vinifera]
Length = 2408
Score = 48.1 bits (113), Expect(2) = 3e-08
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P+P+++ G SRY+V FIDD++RY W++ MK S+ +I
Sbjct: 1666 PSPVASIGXSRYFVVFIDDYSRYSWIFPMKSRSEILSI 1703
Score = 35.4 bits (80), Expect(2) = 3e-08
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 21 DISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
DI C+ C + K ALPFN +S + F+L HSD
Sbjct: 1628 DIFXCTSCXLXKQPALPFNNXESISNSIFELIHSD 1662
>emb|CAN79142.1| hypothetical protein VITISV_040460 [Vitis vinifera]
Length = 1293
Score = 46.6 bits (109), Expect(2) = 3e-08
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI 247
P+PI++ GGSRY+V FIDD++RY W++ M S I
Sbjct: 350 PSPIASIGGSRYFVVFIDDYSRYSWIFPMXSRSXILPI 387
Score = 36.6 bits (83), Expect(2) = 3e-08
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 21 DISNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
D +C+ C++ K ALPFN S +S + F+L HSD
Sbjct: 312 DNFDCTSCQLGKQPALPFNNSESISNSIFELIHSD 346
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 45.1 bits (105), Expect(2) = 4e-08
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 155 GGSRYYVSFIDDHTRYCWVYLMKHHSDFF 241
G +YYVSFIDD++++ W+Y +KH S+ F
Sbjct: 518 GAKKYYVSFIDDYSKFVWIYFLKHKSEVF 546
Score = 37.7 bits (86), Expect(2) = 4e-08
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +3
Query: 27 SNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
S C C+ AK LPF RST VS P +L HSD
Sbjct: 476 SVCDACQQAKCHQLPFPRSTSVSNNPLELIHSD 508
>gb|ABA97008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1202
Score = 45.1 bits (105), Expect(2) = 4e-08
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +2
Query: 155 GGSRYYVSFIDDHTRYCWVYLMKHHSDFF 241
G +YYVSFIDD++++ W+Y +KH S+ F
Sbjct: 527 GAKKYYVSFIDDYSKFVWIYFLKHKSEVF 555
Score = 37.7 bits (86), Expect(2) = 4e-08
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = +3
Query: 27 SNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
S C C+ AK LPF RST VS P +L HSD
Sbjct: 485 SVCDACQQAKCHQLPFPRSTSVSNNPLELIHSD 517
>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1402
Score = 52.0 bits (123), Expect(2) = 6e-08
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +2
Query: 134 PTPISTKGGSRYYVSFIDDHTRYCWVYLMKHHSDFFNI*VAF 259
P+PI++ G RYY FID ++R+ W+Y +K SDF+NI VAF
Sbjct: 532 PSPITSVQGFRYYAVFIDHYSRFSWIYPLKLKSDFYNIFVAF 573
Score = 30.4 bits (67), Expect(2) = 6e-08
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 27 SNCSGCKMAKFSALPFNRSTFVSFTPFDLSHSD 125
S C C++ K + LPF S+F S P + H D
Sbjct: 496 SLCEACQLGKSTRLPFVSSSFTSNRPLERVHCD 528