BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00053675
         (268 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXC34901.1| hypothetical protein L484_020017 [Morus notabilis]     100   2e-19
ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...    98   1e-18
emb|CBI28420.3| unnamed protein product [Vitis vinifera]               96   4e-18
ref|XP_007049307.1| Pentatricopeptide repeat superfamily protein...    94   2e-17
ref|XP_002531691.1| pentatricopeptide repeat-containing protein,...    89   5e-16
ref|XP_006418526.1| hypothetical protein EUTSA_v10002407mg [Eutr...    86   4e-15
ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containi...    85   9e-15
ref|XP_004295354.1| PREDICTED: pentatricopeptide repeat-containi...    83   4e-14
ref|XP_004506592.1| PREDICTED: pentatricopeptide repeat-containi...    72   8e-11
ref|XP_003612041.1| Pentatricopeptide repeat-containing protein ...    72   8e-11
ref|XP_006447757.1| hypothetical protein CICLE_v10014482mg [Citr...    72   1e-10
ref|NP_180537.1| RNA editing factor OTP81 [Arabidopsis thaliana]...    70   3e-10
ref|XP_006293749.1| hypothetical protein CARUB_v10022711mg [Caps...    69   5e-10
ref|XP_007208504.1| hypothetical protein PRUPE_ppa026555mg [Prun...    69   5e-10
ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containi...    69   5e-10
ref|XP_006443657.1| hypothetical protein CICLE_v10019256mg [Citr...    67   2e-09
ref|XP_007199750.1| hypothetical protein PRUPE_ppa002774mg [Prun...    67   2e-09
ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp....    67   2e-09
ref|XP_007163351.1| hypothetical protein PHAVU_001G227500g [Phas...    67   3e-09
ref|XP_007046897.1| Tetratricopeptide repeat (TPR)-like superfam...    67   3e-09

>gb|EXC34901.1| hypothetical protein L484_020017 [Morus notabilis]
          Length = 686

 Score =  100 bits (249), Expect = 2e-19
 Identities = 47/84 (55%), Positives = 65/84 (77%)
 Frame = -3

Query: 254 SLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEPN 75
           SLLQ+CKT +++K+ H+L+++TG F    ++SR+LALYAD KI +L+ ARSVFD I  P+
Sbjct: 25  SLLQSCKTQQDVKRTHALSLRTGAFDHPYIASRLLALYADPKINSLDYARSVFDLIPVPD 84

Query: 74  SFSWSTIIKCFVENHRSDDAIILF 3
             SW+ +IKC+VEN RS DAI LF
Sbjct: 85  LVSWNILIKCYVENQRSHDAICLF 108


>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 46/82 (56%), Positives = 60/82 (73%)
 Frame = -3

Query: 248 LQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEPNSF 69
           LQ C T  E  Q+H+L+IKT +    SVSSR+LALYAD +I NL+ A S+FD I+EP   
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81

Query: 68  SWSTIIKCFVENHRSDDAIILF 3
           SW+ +IKC++EN RS+DAI LF
Sbjct: 82  SWNLLIKCYIENQRSNDAIALF 103


>emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 44/85 (51%), Positives = 62/85 (72%)
 Frame = -3

Query: 257 ISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEP 78
           +SL QTC  P+E++Q+H+ ++KT  F    VSSR+LALY+D KI +L  ARS+FD+I+  
Sbjct: 20  LSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRR 79

Query: 77  NSFSWSTIIKCFVENHRSDDAIILF 3
           +   W+TIIKC+VEN  S D I+LF
Sbjct: 80  SLIHWNTIIKCYVENQFSHDGIVLF 104


>ref|XP_007049307.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
           cacao] gi|508701568|gb|EOX93464.1| Pentatricopeptide
           repeat superfamily protein, putative [Theobroma cacao]
          Length = 682

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 46/84 (54%), Positives = 61/84 (72%)
 Frame = -3

Query: 254 SLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEPN 75
           SLL++ KT  E +Q+H+ ++KTG F   S+SSR+L+LYAD  I NL  ARSVFDQI+ P 
Sbjct: 21  SLLRSSKTHPETQQLHAFSLKTGLFSHPSISSRLLSLYADPDINNLRYARSVFDQIQLPT 80

Query: 74  SFSWSTIIKCFVENHRSDDAIILF 3
              W+ IIKC+VEN +S +AI LF
Sbjct: 81  LILWNIIIKCYVENQQSHEAIFLF 104


>ref|XP_002531691.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528667|gb|EEF30682.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score = 89.4 bits (220), Expect = 5e-16
 Identities = 43/88 (48%), Positives = 63/88 (71%)
 Frame = -3

Query: 266 STQISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQI 87
           S   SLL+T KT +E KQ+H+L++KT TF   S+SS +L+LYA+ KI NLE   S+F++I
Sbjct: 9   SLHFSLLKTSKTDKETKQLHALSVKTNTFSHPSISSCLLSLYAEPKINNLEYVLSIFNKI 68

Query: 86  EEPNSFSWSTIIKCFVENHRSDDAIILF 3
           +EP    ++ +IKC+++N  S DAI LF
Sbjct: 69  QEPALVLYNILIKCYIQNQLSHDAITLF 96


>ref|XP_006418526.1| hypothetical protein EUTSA_v10002407mg [Eutrema salsugineum]
           gi|557096454|gb|ESQ36962.1| hypothetical protein
           EUTSA_v10002407mg [Eutrema salsugineum]
          Length = 784

 Score = 86.3 bits (212), Expect = 4e-15
 Identities = 42/85 (49%), Positives = 61/85 (71%)
 Frame = -3

Query: 257 ISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEP 78
           +++  + ++ +E KQ+HSL++KTGTF    VSSR+++LY    I +L  ARSVFD I+ P
Sbjct: 120 LTIFISSESIKEAKQLHSLSLKTGTFNLSPVSSRLVSLYTSQPINDLIYARSVFDTIQSP 179

Query: 77  NSFSWSTIIKCFVENHRSDDAIILF 3
           +   W+ +IKC+VENHRS DAI LF
Sbjct: 180 SLPLWNMMIKCYVENHRSHDAIRLF 204


>ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 39/76 (51%), Positives = 56/76 (73%)
 Frame = -3

Query: 230 PEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEPNSFSWSTII 51
           P+E++Q+H+ ++KT  F    VSSR+LALY+D KI +L  ARS+FD+I+  +   W+TII
Sbjct: 26  PQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTII 85

Query: 50  KCFVENHRSDDAIILF 3
           KC+VEN  S D I+LF
Sbjct: 86  KCYVENQFSHDGIVLF 101


>ref|XP_004295354.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Fragaria vesca subsp. vesca]
          Length = 821

 Score = 83.2 bits (204), Expect = 4e-14
 Identities = 39/88 (44%), Positives = 61/88 (69%)
 Frame = -3

Query: 266 STQISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQI 87
           S   S+LQ+C+T +E  Q+H+L++KTG F   S++SR+L+LYA+  I +L  A SVF  +
Sbjct: 156 SLSFSILQSCQTLKEATQLHALSLKTGAFTNPSIASRLLSLYANPSINHLPYALSVFSHL 215

Query: 86  EEPNSFSWSTIIKCFVENHRSDDAIILF 3
             PN  S++ ++K  + NHRS DA++LF
Sbjct: 216 PNPNLISFNLLLKSHLLNHRSHDALLLF 243


>ref|XP_004506592.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cicer arietinum]
          Length = 639

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 34/87 (39%), Positives = 58/87 (66%)
 Frame = -3

Query: 263 TQISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIE 84
           T I  ++ CKT ++LKQ+H++ IKT      +VS+ +L L + S  R+   A S+FDQ+ 
Sbjct: 18  TLIPQIKHCKTIQQLKQLHAIFIKTNQTHDPTVSTELLKLSSTSAFRDPIYALSLFDQMP 77

Query: 83  EPNSFSWSTIIKCFVENHRSDDAIILF 3
           +PN F+W+T+I+ F ++  +D A++LF
Sbjct: 78  QPNVFAWNTVIRAFSDSSNADKALLLF 104


>ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355513376|gb|AES94999.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 518

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 33/85 (38%), Positives = 52/85 (61%)
 Frame = -3

Query: 257 ISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEP 78
           +SLL+ C    ELKQ+H   +K GT R     SR+L  YA  +  NL  AR VFD+I  P
Sbjct: 15  MSLLERCSNIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSP 74

Query: 77  NSFSWSTIIKCFVENHRSDDAIILF 3
           N+  W+T+I+ +  ++  ++A++L+
Sbjct: 75  NTVMWNTMIRAYSNSNDPEEALLLY 99


>ref|XP_006447757.1| hypothetical protein CICLE_v10014482mg [Citrus clementina]
           gi|568830445|ref|XP_006469509.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Citrus sinensis]
           gi|557550368|gb|ESR60997.1| hypothetical protein
           CICLE_v10014482mg [Citrus clementina]
          Length = 689

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 34/85 (40%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = -3

Query: 254 SLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQI-EEP 78
           ++L+   T +E +Q+H+L++KT       +SSR+L+LY D  I NL  ARS+FD++ + P
Sbjct: 26  NILKFSSTHKETQQLHALSVKTNLIYHSGISSRLLSLYVDPHINNLHYARSIFDRVLQHP 85

Query: 77  NSFSWSTIIKCFVENHRSDDAIILF 3
           +   ++ +IKC+V N RS +A+ LF
Sbjct: 86  SLVLYNLLIKCYVFNQRSHEALTLF 110


>ref|NP_180537.1| RNA editing factor OTP81 [Arabidopsis thaliana]
           gi|75100656|sp|O82380.1|PP175_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
           gi|3582328|gb|AAC35225.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253207|gb|AEC08301.1| RNA
           editing factor OTP81 [Arabidopsis thaliana]
          Length = 738

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 33/75 (44%), Positives = 50/75 (66%)
 Frame = -3

Query: 266 STQISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQI 87
           S  ISL++ C +  +LKQ H   I+TGTF     +S++ A+ A S   +LE AR VFD+I
Sbjct: 31  SRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEI 90

Query: 86  EEPNSFSWSTIIKCF 42
            +PNSF+W+T+I+ +
Sbjct: 91  PKPNSFAWNTLIRAY 105


>ref|XP_006293749.1| hypothetical protein CARUB_v10022711mg [Capsella rubella]
           gi|482562457|gb|EOA26647.1| hypothetical protein
           CARUB_v10022711mg [Capsella rubella]
          Length = 739

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 32/72 (44%), Positives = 48/72 (66%)
 Frame = -3

Query: 257 ISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEP 78
           ISL+  C    +LKQ H+  I+TGTF     +S++ A+ A S   +LE AR VFD+I +P
Sbjct: 35  ISLIDRCSNLRQLKQTHAHMIRTGTFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQP 94

Query: 77  NSFSWSTIIKCF 42
           NSF+W+T+I+ +
Sbjct: 95  NSFTWNTLIRAY 106


>ref|XP_007208504.1| hypothetical protein PRUPE_ppa026555mg [Prunus persica]
           gi|462404146|gb|EMJ09703.1| hypothetical protein
           PRUPE_ppa026555mg [Prunus persica]
          Length = 565

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 32/88 (36%), Positives = 57/88 (64%)
 Frame = -3

Query: 266 STQISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQI 87
           +T +SLL+TCK+  ELKQ+H L I T  F  +   SR++   A+S+ R+L  A+SVF QI
Sbjct: 6   NTILSLLETCKSMSELKQLHGLMITTSVFNNVIPLSRLVDFCANSEARDLVYAKSVFHQI 65

Query: 86  EEPNSFSWSTIIKCFVENHRSDDAIILF 3
            +P  + W+++I+ +  +    +++I++
Sbjct: 66  NQPRVYIWNSMIRGYSNSENPAESLIMY 93


>ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
 Frame = -3

Query: 248 LQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEPNSF 69
           ++ CK+  ELKQVH+  +KTG     ++++ IL L A S  R++  A SVFDQ+ E N F
Sbjct: 22  IKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCF 81

Query: 68  SWSTIIKCFVENH-RSDDAIILF 3
           +W+T+I+   E   R  DA+++F
Sbjct: 82  AWNTVIRALAETQDRHLDALLVF 104


>ref|XP_006443657.1| hypothetical protein CICLE_v10019256mg [Citrus clementina]
           gi|568853066|ref|XP_006480188.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g48910-like [Citrus sinensis]
           gi|557545919|gb|ESR56897.1| hypothetical protein
           CICLE_v10019256mg [Citrus clementina]
          Length = 642

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 37/85 (43%), Positives = 50/85 (58%)
 Frame = -3

Query: 266 STQISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQI 87
           S+Q   +  CK+  EL QVH+  IKTG  R    ++ IL   A S + +LE A  VF QI
Sbjct: 19  SSQFPEITKCKSMRELTQVHAHFIKTGQIRDPLAAAEILRFCAVSDLGDLEYAHKVFTQI 78

Query: 86  EEPNSFSWSTIIKCFVENHRSDDAI 12
            EPN FS++TII+ F E    DD++
Sbjct: 79  REPNCFSYNTIIRAFSECKDDDDSL 103


>ref|XP_007199750.1| hypothetical protein PRUPE_ppa002774mg [Prunus persica]
           gi|462395150|gb|EMJ00949.1| hypothetical protein
           PRUPE_ppa002774mg [Prunus persica]
          Length = 635

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
 Frame = -3

Query: 248 LQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEPNSF 69
           +  CKT  +L QVH+L IKT        ++ IL  YA S  RN+E AR+VF+ ++ PN F
Sbjct: 23  ITACKTIRDLHQVHALFIKTRQIHDPLAAAEILRFYALSAHRNIEWARAVFNHMQRPNCF 82

Query: 68  SWSTIIKCFVENHRSD---DAIILF 3
           SW+TII+   E+   +   +A++LF
Sbjct: 83  SWNTIIRALAESSVDEHPLEALLLF 107


>ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297325073|gb|EFH55493.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 31/72 (43%), Positives = 48/72 (66%)
 Frame = -3

Query: 257 ISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEP 78
           ISL+  C +  +LKQ H+  I+TG F     +S++ A+ A S   +LE AR VFD+I +P
Sbjct: 35  ISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQP 94

Query: 77  NSFSWSTIIKCF 42
           NSF+W+T+I+ +
Sbjct: 95  NSFTWNTLIRAY 106


>ref|XP_007163351.1| hypothetical protein PHAVU_001G227500g [Phaseolus vulgaris]
           gi|561036815|gb|ESW35345.1| hypothetical protein
           PHAVU_001G227500g [Phaseolus vulgaris]
          Length = 638

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
 Frame = -3

Query: 248 LQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEPNSF 69
           ++TCK+  ELKQVH+  +KT      ++++ IL+L A S  R+   A SVFDQ+ + N F
Sbjct: 22  IRTCKSMRELKQVHAFFVKTARTHDTTIATEILSLSATSDFRDTGYALSVFDQMPDRNCF 81

Query: 68  SWSTIIKCFVENH-RSDDAIILF 3
           +W+T+I+   E   R  DA+++F
Sbjct: 82  AWNTVIRALAETQDRLLDALLVF 104


>ref|XP_007046897.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
           cacao] gi|508699158|gb|EOX91054.1| Tetratricopeptide
           repeat (TPR)-like superfamily protein [Theobroma cacao]
          Length = 529

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 32/85 (37%), Positives = 49/85 (57%)
 Frame = -3

Query: 257 ISLLQTCKTPEELKQVHSLTIKTGTFRQISVSSRILALYADSKIRNLECARSVFDQIEEP 78
           +S+L+ C   EELKQ+H+   KTG        SRIL      K  NLE A+ VFD++  P
Sbjct: 22  LSVLERCSRMEELKQIHAQMFKTGLVADTITVSRILTFCVSPKYGNLEYAQMVFDRVSRP 81

Query: 77  NSFSWSTIIKCFVENHRSDDAIILF 3
           N+F ++T+I+ +  N   + A +L+
Sbjct: 82  NTFMYNTMIRGYSNNKEPEKAFLLY 106