BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00053608
         (350 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523226.1| pentatricopeptide repeat-containing protein,...   122   7e-26
ref|XP_007046316.1| Pentatricopeptide repeat (PPR) superfamily p...   120   1e-25
emb|CBI24313.3| unnamed protein product [Vitis vinifera]              114   1e-23
ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containi...   114   1e-23
ref|XP_006414782.1| hypothetical protein EUTSA_v10027059mg [Eutr...   109   4e-22
ref|XP_002868306.1| pentatricopeptide repeat-containing protein ...   107   1e-21
ref|XP_006283664.1| hypothetical protein CARUB_v10004721mg [Caps...   105   8e-21
ref|NP_193153.3| pentatricopeptide repeat-containing protein [Ar...   102   7e-20
gb|AAU94392.1| At4g14170 [Arabidopsis thaliana] gi|55733761|gb|A...   102   7e-20
emb|CAB10196.1| hypothetical protein [Arabidopsis thaliana] gi|7...   102   7e-20
ref|XP_007207048.1| hypothetical protein PRUPE_ppb025182mg [Prun...    98   1e-18
gb|ADE77588.1| unknown [Picea sitchensis]                              97   2e-18
emb|CBI24015.3| unnamed protein product [Vitis vinifera]               97   3e-18
ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containi...    97   3e-18
gb|EXB63374.1| hypothetical protein L484_002623 [Morus notabilis]      94   1e-17
ref|XP_006349785.1| PREDICTED: pentatricopeptide repeat-containi...    93   4e-17
ref|XP_006399126.1| hypothetical protein EUTSA_v10015670mg [Eutr...    93   4e-17
ref|XP_002309408.2| hypothetical protein POPTR_0006s22400g [Popu...    92   6e-17
ref|XP_006289319.1| hypothetical protein CARUB_v10002804mg [Caps...    92   6e-17
ref|XP_004252881.1| PREDICTED: pentatricopeptide repeat-containi...    92   6e-17

>ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537522|gb|EEF39147.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 488

 Score =  122 bits (305), Expect = 7e-26
 Identities = 56/86 (65%), Positives = 72/86 (83%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           PMEPD AVLGAIL GCR+H N EVGERIA +L++L+PE++GYY LLAN+YA  GRF EAE
Sbjct: 403 PMEPDEAVLGAILAGCRVHNNVEVGERIAKRLIRLKPEKAGYYVLLANMYAGVGRFHEAE 462

Query: 168 AVWDAMKQRNVSKIPGCSLI*SSNGF 91
            V D+M+++N+SK+PGCSL+ S + F
Sbjct: 463 MVRDSMQEKNMSKVPGCSLLESKSCF 488


>ref|XP_007046316.1| Pentatricopeptide repeat (PPR) superfamily protein, putative
           [Theobroma cacao] gi|508710251|gb|EOY02148.1|
           Pentatricopeptide repeat (PPR) superfamily protein,
           putative [Theobroma cacao]
          Length = 478

 Score =  120 bits (302), Expect = 1e-25
 Identities = 56/84 (66%), Positives = 68/84 (80%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           PMEPD A+LGAIL GCR+H N +VGERIA KL+ LEPE SGYY LL+NIYAA+G+F +AE
Sbjct: 387 PMEPDAAILGAILAGCRVHNNVQVGERIARKLISLEPENSGYYVLLSNIYAAAGKFDDAE 446

Query: 168 AVWDAMKQRNVSKIPGCSLI*SSN 97
            V + MK +NVSK+PGCS I S +
Sbjct: 447 KVREFMKDKNVSKVPGCSSIESES 470


>emb|CBI24313.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score =  114 bits (285), Expect = 1e-23
 Identities = 52/78 (66%), Positives = 64/78 (82%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+E DGAVLGA+LGGCR+HGN EVGER+A KL+ LEPE++  Y +LANIYA +GRF +AE
Sbjct: 326 PVEADGAVLGALLGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAE 385

Query: 168 AVWDAMKQRNVSKIPGCS 115
            V   MKQR +SK+PGCS
Sbjct: 386 KVRQLMKQRKLSKVPGCS 403


>ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  114 bits (285), Expect = 1e-23
 Identities = 52/78 (66%), Positives = 64/78 (82%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+E DGAVLGA+LGGCR+HGN EVGER+A KL+ LEPE++  Y +LANIYA +GRF +AE
Sbjct: 374 PVEADGAVLGALLGGCRVHGNAEVGERVAKKLMGLEPEKASNYVMLANIYAGAGRFEDAE 433

Query: 168 AVWDAMKQRNVSKIPGCS 115
            V   MKQR +SK+PGCS
Sbjct: 434 KVRQLMKQRKLSKVPGCS 451


>ref|XP_006414782.1| hypothetical protein EUTSA_v10027059mg [Eutrema salsugineum]
           gi|557115952|gb|ESQ56235.1| hypothetical protein
           EUTSA_v10027059mg [Eutrema salsugineum]
          Length = 472

 Score =  109 bits (272), Expect = 4e-22
 Identities = 46/80 (57%), Positives = 66/80 (82%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+EPD AV+GA+L GC+++GN EVGER+A KL++LEP ++GYY  LA +Y+A+GRF EAE
Sbjct: 393 PVEPDEAVMGAVLSGCKVYGNVEVGERVARKLIRLEPGKAGYYVTLAGLYSATGRFDEAE 452

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++   MK++ +SK+PGCS I
Sbjct: 453 SLRQLMKEKQISKVPGCSSI 472


>ref|XP_002868306.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297314142|gb|EFH44565.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 458

 Score =  107 bits (268), Expect = 1e-21
 Identities = 46/80 (57%), Positives = 64/80 (80%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+EPD AVLGA+L GC+++GN EVGER+A KL++LEP +  YY  LA +Y+A+GRF EAE
Sbjct: 379 PVEPDEAVLGAVLSGCKVYGNVEVGERVARKLIQLEPRKGSYYVTLAGLYSAAGRFDEAE 438

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++   MK++ +SK+PGCS I
Sbjct: 439 SLRQLMKEKQISKVPGCSSI 458


>ref|XP_006283664.1| hypothetical protein CARUB_v10004721mg [Capsella rubella]
           gi|482552369|gb|EOA16562.1| hypothetical protein
           CARUB_v10004721mg [Capsella rubella]
          Length = 477

 Score =  105 bits (261), Expect = 8e-21
 Identities = 46/80 (57%), Positives = 64/80 (80%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+EPD AV+GA+L GC+++GN EVGER+A KL++L P ++GYY  LA IY+A+GRF EAE
Sbjct: 398 PVEPDEAVMGAVLSGCKVYGNVEVGERVARKLIQLAPGKAGYYVTLAGIYSATGRFDEAE 457

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++   MK++ +SK PGCS I
Sbjct: 458 SLRQWMKEKQISKAPGCSSI 477


>ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14170 gi|332657989|gb|AEE83389.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  102 bits (253), Expect = 7e-20
 Identities = 42/80 (52%), Positives = 65/80 (81%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P++PD AV+GA+L GC+++GN EVGER+A +L++L+P ++ YY  LA +Y+A+GRF EAE
Sbjct: 398 PVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVTLAGLYSAAGRFDEAE 457

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++   MK++ +SK+PGCS I
Sbjct: 458 SLRQWMKEKQISKVPGCSSI 477


>gb|AAU94392.1| At4g14170 [Arabidopsis thaliana] gi|55733761|gb|AAV59277.1|
           At4g14170 [Arabidopsis thaliana]
          Length = 458

 Score =  102 bits (253), Expect = 7e-20
 Identities = 42/80 (52%), Positives = 65/80 (81%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P++PD AV+GA+L GC+++GN EVGER+A +L++L+P ++ YY  LA +Y+A+GRF EAE
Sbjct: 379 PVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVTLAGLYSAAGRFDEAE 438

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++   MK++ +SK+PGCS I
Sbjct: 439 SLRQWMKEKQISKVPGCSSI 458


>emb|CAB10196.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268122|emb|CAB78459.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 428

 Score =  102 bits (253), Expect = 7e-20
 Identities = 42/80 (52%), Positives = 65/80 (81%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P++PD AV+GA+L GC+++GN EVGER+A +L++L+P ++ YY  LA +Y+A+GRF EAE
Sbjct: 349 PVKPDEAVMGAVLSGCKVYGNVEVGERVARELIQLKPRKASYYVTLAGLYSAAGRFDEAE 408

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++   MK++ +SK+PGCS I
Sbjct: 409 SLRQWMKEKQISKVPGCSSI 428


>ref|XP_007207048.1| hypothetical protein PRUPE_ppb025182mg [Prunus persica]
           gi|462402690|gb|EMJ08247.1| hypothetical protein
           PRUPE_ppb025182mg [Prunus persica]
          Length = 672

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 45/80 (56%), Positives = 61/80 (76%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P++P+ AVLGA+LG CR+HGN E+GER+   LL+LEP+ SG YALL+NIYA +GR+ +AE
Sbjct: 464 PIKPNAAVLGALLGACRIHGNAEMGERVGRILLELEPQNSGRYALLSNIYAKAGRWDDAE 523

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
            V   MK+R V   PG S++
Sbjct: 524 KVRMLMKERGVKTSPGISMV 543


>gb|ADE77588.1| unknown [Picea sitchensis]
          Length = 312

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 45/84 (53%), Positives = 61/84 (72%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+EP  +V GA LG CR+H N E+GER+A  LL L+P+ +GYY LL+NIYAA+GR+ +  
Sbjct: 104 PIEPGASVWGAFLGSCRIHCNIELGERVAELLLNLDPDNAGYYVLLSNIYAAAGRWDDVA 163

Query: 168 AVWDAMKQRNVSKIPGCSLI*SSN 97
            V   MK+++V K PGCSLI  +N
Sbjct: 164 KVRKMMKEKDVKKSPGCSLIEVNN 187


>emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 44/85 (51%), Positives = 60/85 (70%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+ PD  VLGA++G CR+HGNTE+GE+I  K+++LEP  SG Y LLAN+YA++GR+ +  
Sbjct: 361 PVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVA 420

Query: 168 AVWDAMKQRNVSKIPGCSLI*SSNG 94
            V   M  R V K PG S+I S +G
Sbjct: 421 KVRKLMNDRGVKKAPGFSMIESESG 445


>ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score = 96.7 bits (239), Expect = 3e-18
 Identities = 44/85 (51%), Positives = 60/85 (70%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P+ PD  VLGA++G CR+HGNTE+GE+I  K+++LEP  SG Y LLAN+YA++GR+ +  
Sbjct: 416 PVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVA 475

Query: 168 AVWDAMKQRNVSKIPGCSLI*SSNG 94
            V   M  R V K PG S+I S +G
Sbjct: 476 KVRKLMNDRGVKKAPGFSMIESESG 500


>gb|EXB63374.1| hypothetical protein L484_002623 [Morus notabilis]
          Length = 819

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 44/86 (51%), Positives = 57/86 (66%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           PM PD  V GA+LG CR+HGN E+G   A  L +L+P+ SGYY LL+N+Y  +GR+ EA 
Sbjct: 712 PMVPDANVWGALLGACRIHGNVELGTWAAENLFRLKPQHSGYYILLSNMYVEAGRWKEAN 771

Query: 168 AVWDAMKQRNVSKIPGCSLI*SSNGF 91
           A+ + MK R V K PGCS +   N F
Sbjct: 772 AIRELMKSRGVKKGPGCSWVQIGNHF 797


>ref|XP_006349785.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Solanum tuberosum]
          Length = 809

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 42/80 (52%), Positives = 56/80 (70%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P EPD  V  A+LG CRL+GN ++G   A  L KL+P   GYYALL+N+YA +GR+GEA+
Sbjct: 704 PFEPDSNVWAALLGACRLNGNVDLGSWAAEHLFKLQPHHPGYYALLSNMYAEAGRWGEAD 763

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++ + MK R V K PGCS +
Sbjct: 764 SIRELMKLRGVKKNPGCSWV 783


>ref|XP_006399126.1| hypothetical protein EUTSA_v10015670mg [Eutrema salsugineum]
           gi|557100216|gb|ESQ40579.1| hypothetical protein
           EUTSA_v10015670mg [Eutrema salsugineum]
          Length = 620

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 41/80 (51%), Positives = 61/80 (76%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P++P+  VLGA+LG C+++ NTEV ER+ N L+++ PE SGYY LL+NIYA +G++ + E
Sbjct: 413 PVKPNAPVLGALLGACKIYKNTEVAERVGNMLIEVNPEHSGYYVLLSNIYACAGKWEKIE 472

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++ D MK++ V K PG SLI
Sbjct: 473 SLRDTMKEKLVKKPPGWSLI 492


>ref|XP_002309408.2| hypothetical protein POPTR_0006s22400g [Populus trichocarpa]
           gi|550336857|gb|EEE92931.2| hypothetical protein
           POPTR_0006s22400g [Populus trichocarpa]
          Length = 563

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 40/80 (50%), Positives = 59/80 (73%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P++P     GA+LG C+LHG+ E+ E +AN+LL+LEPE++G Y LL+NIYA++ ++ +  
Sbjct: 480 PLKPHACAWGALLGACKLHGDVELREEVANRLLELEPEKAGSYVLLSNIYASANQWLDVS 539

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
            V D MK+R + KIPGCS I
Sbjct: 540 IVRDEMKERGIRKIPGCSYI 559


>ref|XP_006289319.1| hypothetical protein CARUB_v10002804mg [Capsella rubella]
           gi|482558025|gb|EOA22217.1| hypothetical protein
           CARUB_v10002804mg [Capsella rubella]
          Length = 622

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 40/80 (50%), Positives = 62/80 (77%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P++P+  +LGA+LG C+++ NTEV ER+ N L++++PE SGYY LL+NIYA +G++ + E
Sbjct: 413 PVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKIE 472

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++ D MK++ V K PG SLI
Sbjct: 473 SLRDTMKEKLVKKPPGWSLI 492


>ref|XP_004252881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Solanum lycopersicum]
          Length = 672

 Score = 92.4 bits (228), Expect = 6e-17
 Identities = 43/80 (53%), Positives = 56/80 (70%)
 Frame = -3

Query: 348 PMEPDGAVLGAILGGCRLHGNTEVGERIANKLLKLEPERSGYYALLANIYAASGRFGEAE 169
           P EPD  V  A+LG CRL+GN E+G   A  L K++P   GYYALL+N+YA +GR+GEA+
Sbjct: 577 PFEPDFNVWAALLGACRLNGNVELGSWAAEHLFKMQPHHPGYYALLSNMYAEAGRWGEAD 636

Query: 168 AVWDAMKQRNVSKIPGCSLI 109
           ++ + MK R V K PGCS I
Sbjct: 637 SIREMMKLRGVKKNPGCSWI 656