BLASTX nr result
ID: Cocculus23_contig00052051
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00052051
(282 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helica... 63 4e-10
emb|CBI36896.3| unnamed protein product [Vitis vinifera] 62 7e-10
ref|XP_006303138.1| hypothetical protein CARUB_v10008109mg [Caps... 52 2e-06
ref|XP_007009967.1| RNA helicase family protein [Theobroma cacao... 45 8e-06
ref|XP_006476332.1| PREDICTED: probable ATP-dependent RNA helica... 47 8e-06
ref|XP_006439281.1| hypothetical protein CICLE_v10018519mg [Citr... 47 8e-06
ref|XP_006476333.1| PREDICTED: probable ATP-dependent RNA helica... 47 8e-06
>ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Vitis
vinifera]
Length = 1414
Score = 62.8 bits (151), Expect(2) = 4e-10
Identities = 27/42 (64%), Positives = 35/42 (83%)
Frame = -1
Query: 264 RANLLLGYTVAVAASLNLPNPFFMQFQGSHSNEDGLDQMSSS 139
RANL+LGY VA AA+L+LPNPF MQF+G+H+ DGLDQ+ +
Sbjct: 990 RANLVLGYAVAAAAALSLPNPFVMQFEGNHTRNDGLDQVEKA 1031
Score = 26.9 bits (58), Expect(2) = 4e-10
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 52 DAMTAAYALQLFELAKS 2
DA+T AYALQ FEL+ S
Sbjct: 1068 DALTVAYALQCFELSGS 1084
>emb|CBI36896.3| unnamed protein product [Vitis vinifera]
Length = 1098
Score = 62.0 bits (149), Expect(2) = 7e-10
Identities = 27/38 (71%), Positives = 33/38 (86%)
Frame = -1
Query: 264 RANLLLGYTVAVAASLNLPNPFFMQFQGSHSNEDGLDQ 151
RANL+LGY VA AA+L+LPNPF MQF+G+H+ DGLDQ
Sbjct: 749 RANLVLGYAVAAAAALSLPNPFVMQFEGNHTRNDGLDQ 786
Score = 26.9 bits (58), Expect(2) = 7e-10
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 52 DAMTAAYALQLFELAKS 2
DA+T AYALQ FEL+ S
Sbjct: 807 DALTVAYALQCFELSGS 823
>ref|XP_006303138.1| hypothetical protein CARUB_v10008109mg [Capsella rubella]
gi|482571849|gb|EOA36036.1| hypothetical protein
CARUB_v10008109mg [Capsella rubella]
Length = 1244
Score = 51.6 bits (122), Expect(2) = 2e-06
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = -1
Query: 282 QNYSQRRANLLLGYTVAVAASLNLPNPFFMQFQGSHSNE 166
QNYS RANL+LGY VA A+L+LPNP MQF+G NE
Sbjct: 854 QNYS--RANLVLGYAVAAVAALSLPNPLIMQFEGDKKNE 890
Score = 25.8 bits (55), Expect(2) = 2e-06
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 127 ENSEPERKNEAKENETAGQ---SCPC*IDAMTAAYALQLFELA 8
+ E +R+ E KE A + S P DA+T AYAL FE++
Sbjct: 899 KQDEKQRRKERKEKIRAARDRFSNPS-SDALTVAYALHSFEVS 940
>ref|XP_007009967.1| RNA helicase family protein [Theobroma cacao]
gi|508726880|gb|EOY18777.1| RNA helicase family protein
[Theobroma cacao]
Length = 1389
Score = 45.4 bits (106), Expect(2) = 8e-06
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = -1
Query: 273 SQRRANLLLGYTVAVAASLNLPNPFFMQFQGSHSNED 163
S RANL+L Y VA AA L+L NPF M+++GS+S D
Sbjct: 963 SYARANLVLAYAVAAAAVLSLTNPFVMEYEGSYSQTD 999
Score = 29.6 bits (65), Expect(2) = 8e-06
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = -3
Query: 139 LR*SENSEPERKNEAKENETAGQSCPC*IDAMTAAYALQLFELAKS 2
L+ E S+ ++ E A S P D +T AYALQ FEL+KS
Sbjct: 1016 LKKKEKSQKKKLREMARMSHAKFSNPS-SDTLTVAYALQCFELSKS 1060
>ref|XP_006476332.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like isoform X1
[Citrus sinensis]
Length = 1340
Score = 47.0 bits (110), Expect(2) = 8e-06
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Frame = -1
Query: 273 SQRRANLLLGYTVAVAASLNLPNPFFMQFQG--SHSNEDGLDQMSSSFDS 130
S RANL+LGY VA AA+L++ NPF +Q +G ++SN+ L++ ++ DS
Sbjct: 919 SYARANLVLGYGVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDS 968
Score = 28.1 bits (61), Expect(2) = 8e-06
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 52 DAMTAAYALQLFELAKS 2
D +T AYALQ FEL+KS
Sbjct: 1000 DVLTVAYALQCFELSKS 1016
>ref|XP_006439281.1| hypothetical protein CICLE_v10018519mg [Citrus clementina]
gi|557541543|gb|ESR52521.1| hypothetical protein
CICLE_v10018519mg [Citrus clementina]
Length = 1317
Score = 47.0 bits (110), Expect(2) = 8e-06
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Frame = -1
Query: 273 SQRRANLLLGYTVAVAASLNLPNPFFMQFQG--SHSNEDGLDQMSSSFDS 130
S RANL+LGY VA AA+L++ NPF +Q +G ++SN+ L++ ++ DS
Sbjct: 896 SYARANLVLGYGVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDS 945
Score = 28.1 bits (61), Expect(2) = 8e-06
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 52 DAMTAAYALQLFELAKS 2
D +T AYALQ FEL+KS
Sbjct: 977 DVLTVAYALQCFELSKS 993
>ref|XP_006476333.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like isoform
X2 [Citrus sinensis] gi|568844932|ref|XP_006476334.1|
PREDICTED: probable ATP-dependent RNA helicase
DHX37-like isoform X3 [Citrus sinensis]
Length = 1247
Score = 47.0 bits (110), Expect(2) = 8e-06
Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 2/50 (4%)
Frame = -1
Query: 273 SQRRANLLLGYTVAVAASLNLPNPFFMQFQG--SHSNEDGLDQMSSSFDS 130
S RANL+LGY VA AA+L++ NPF +Q +G ++SN+ L++ ++ DS
Sbjct: 826 SYARANLVLGYGVAAAAALSVSNPFVLQLEGTQTNSNDSELEERDNALDS 875
Score = 28.1 bits (61), Expect(2) = 8e-06
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = -3
Query: 52 DAMTAAYALQLFELAKS 2
D +T AYALQ FEL+KS
Sbjct: 907 DVLTVAYALQCFELSKS 923