BLASTX nr result
ID: Cocculus23_contig00051239
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00051239
(566 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer ar... 96 2e-41
ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru... 90 6e-40
gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus] 90 6e-40
gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus] 90 6e-40
ref|XP_004500032.1| PREDICTED: genome polyprotein-like [Cicer ar... 92 9e-34
sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contain... 99 8e-31
ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]... 99 8e-31
gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus] 99 8e-31
ref|XP_004515135.1| PREDICTED: genome polyprotein-like [Cicer ar... 88 2e-25
ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer ar... 96 4e-25
ref|XP_004490917.1| PREDICTED: genome polyprotein-like [Cicer ar... 94 5e-25
ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer ar... 91 1e-23
ref|XP_004509900.1| PREDICTED: genome polyprotein-like [Cicer ar... 90 4e-23
ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus] 86 3e-21
ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Popu... 86 1e-20
ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, part... 71 2e-20
ref|XP_004509642.1| PREDICTED: genome polyprotein-like [Cicer ar... 65 1e-17
ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer ar... 70 4e-16
gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein... 87 2e-15
ref|XP_004488974.1| PREDICTED: genome polyprotein-like [Cicer ar... 65 4e-13
>ref|XP_004497811.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1951
Score = 95.5 bits (236), Expect(3) = 2e-41
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 13/92 (14%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQT+A D YW ++LIEE+N YCGHASG FK +E+HYHT +KE LAV+ GI+KFD
Sbjct: 1637 KRILQTDASDHYWGAVLIEEINGVKYYCGHASGQFKEAEKHYHTTYKEALAVKLGIQKFD 1696
Query: 453 FFLRSHNF-------------KFKWIIPPSPE 509
F LR + F +FK +PP P+
Sbjct: 1697 FHLRGYQFEVQMDNSSFPRILEFKNKMPPDPQ 1728
Score = 70.5 bits (171), Expect(3) = 2e-41
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G+Y P PHIA ELL FP + LTVKQ+QQFLGI+N+IR FIPK
Sbjct: 1544 MHFSQGKYQPQPHIAQELLNFPDENLTVKQIQQFLGIINYIRDFIPK 1590
Score = 50.4 bits (119), Expect(3) = 2e-41
Identities = 21/41 (51%), Positives = 29/41 (70%)
Frame = +2
Query: 155 LAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTGKK 277
L+QL +K PPPW H KA++ LK++ Q+PP L IP GK+
Sbjct: 1598 LSQLLKKNPPPWEPKHTKAIKTLKRISQTPPALKIPGNGKR 1638
>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
gi|565672276|gb|AHC13194.1| polyprotein [Citrus
endogenous pararetrovirus]
Length = 1812
Score = 89.7 bits (221), Expect(4) = 6e-40
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
KKILQT+A D YWS++L+EE N +C HASG FK SE++YH ++KEIL V+ GIKKF+
Sbjct: 1636 KKILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEILTVKYGIKKFE 1695
Query: 453 FFLRSHNF 476
F L SH F
Sbjct: 1696 FHLISHTF 1703
Score = 62.0 bits (149), Expect(4) = 6e-40
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +1
Query: 10 KSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIP 138
K G Y PG H+A ELL FP L+ KQVQQFLGI+N+IR FIP
Sbjct: 1546 KDGHYQPGKHVAQELLHFPDQQLSKKQVQQFLGIINYIRDFIP 1588
Score = 42.0 bits (97), Expect(4) = 6e-40
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 473 F*VQMDNSSFPRALEFKNKVLPDPQVLKLK 562
F + MDNSSFPR +FKNK+L D Q+L LK
Sbjct: 1703 FLINMDNSSFPRIFDFKNKLLLDKQLLNLK 1732
Score = 37.4 bits (85), Expect(4) = 6e-40
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 155 LAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPP 250
L+ L +K PP W+ H AV LK++ Q+PPP
Sbjct: 1597 LSALLKKKPPEWNDDHTNAVTTLKKIAQNPPP 1628
>gb|AHC13197.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1799
Score = 89.7 bits (221), Expect(4) = 6e-40
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
KKILQT+A D YWS++L+EE N +C HASG FK SE++YH ++KEIL V+ GIKKF+
Sbjct: 1623 KKILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEILTVKYGIKKFE 1682
Query: 453 FFLRSHNF 476
F L SH F
Sbjct: 1683 FHLISHTF 1690
Score = 62.0 bits (149), Expect(4) = 6e-40
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +1
Query: 10 KSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIP 138
K G Y PG H+A ELL FP L+ KQVQQFLGI+N+IR FIP
Sbjct: 1533 KDGHYQPGKHVAQELLHFPDQQLSKKQVQQFLGIINYIRDFIP 1575
Score = 42.0 bits (97), Expect(4) = 6e-40
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 473 F*VQMDNSSFPRALEFKNKVLPDPQVLKLK 562
F + MDNSSFPR +FKNK+L D Q+L LK
Sbjct: 1690 FLINMDNSSFPRIFDFKNKLLLDKQLLNLK 1719
Score = 37.4 bits (85), Expect(4) = 6e-40
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 155 LAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPP 250
L+ L +K PP W+ H AV LK++ Q+PPP
Sbjct: 1584 LSALLKKKPPEWNDDHTNAVTTLKKIAQNPPP 1615
>gb|AHC13200.1| polyprotein [Citrus endogenous pararetrovirus]
Length = 1701
Score = 89.7 bits (221), Expect(4) = 6e-40
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
KKILQT+A D YWS++L+EE N +C HASG FK SE++YH ++KEIL V+ GIKKF+
Sbjct: 1525 KKILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEILTVKYGIKKFE 1584
Query: 453 FFLRSHNF 476
F L SH F
Sbjct: 1585 FHLISHTF 1592
Score = 62.0 bits (149), Expect(4) = 6e-40
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +1
Query: 10 KSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIP 138
K G Y PG H+A ELL FP L+ KQVQQFLGI+N+IR FIP
Sbjct: 1435 KDGHYQPGKHVAQELLHFPDQQLSKKQVQQFLGIINYIRDFIP 1477
Score = 42.0 bits (97), Expect(4) = 6e-40
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 473 F*VQMDNSSFPRALEFKNKVLPDPQVLKLK 562
F + MDNSSFPR +FKNK+L D Q+L LK
Sbjct: 1592 FLINMDNSSFPRIFDFKNKLLLDKQLLNLK 1621
Score = 37.4 bits (85), Expect(4) = 6e-40
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 155 LAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPP 250
L+ L +K PP W+ H AV LK++ Q+PPP
Sbjct: 1486 LSALLKKKPPEWNDDHTNAVTTLKKIAQNPPP 1517
>ref|XP_004500032.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 313
Score = 92.4 bits (228), Expect(3) = 9e-34
Identities = 41/69 (59%), Positives = 53/69 (76%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQT+ D YW ++LIEE+N YCGHASG FK +E+HYHT +KE LAV+ GI+KFD
Sbjct: 208 KRILQTDVSDHYWGAVLIEEINGVKHYCGHASGQFKEAEKHYHTTYKEALAVKLGIQKFD 267
Query: 453 FFLRSHNFK 479
F LR + F+
Sbjct: 268 FHLRGYQFE 276
Score = 49.3 bits (116), Expect(3) = 9e-34
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +2
Query: 470 QF*VQMDNSSFPRALEFKNKVLPDPQVLKLKE 565
QF VQMDNS FPR LEFKNK+ DPQ L+LK+
Sbjct: 274 QFEVQMDNSYFPRILEFKNKMSSDPQTLRLKD 305
Score = 48.5 bits (114), Expect(3) = 9e-34
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 89 KSSNFLG*STSSDNLSP---RQPNTLAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTI 259
K FLG N P R + L+QL RK PPW H + V+ +K++ Q+PP L I
Sbjct: 144 KIQQFLGIINYIQNFIPKLARYTSPLSQLLRKNSPPWEPKHTEVVKTVKRIAQTPPALKI 203
Query: 260 PTTGKK 277
P GK+
Sbjct: 204 PGNGKR 209
Score = 64.3 bits (155), Expect = 2e-08
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F +Y P PHIA ELL FP + LTVK++QQFLGI+N+I+ FIPK
Sbjct: 115 MHFSQRKYQPQPHIAQELLNFPDENLTVKKIQQFLGIINYIQNFIPK 161
>sp|Q6XKE6.1|POLG_PVCV2 RecName: Full=Genome polyprotein; Contains: RecName: Full=Movement
protein; Short=MP; Contains: RecName: Full=Capsid
protein; Short=CP; Contains: RecName: Full=Aspartic
protease; Short=PR; Contains: RecName: Full=Reverse
transcriptase; Short=RT gi|34328896|gb|AAO67368.1|
polyprotein 1 [Petunia vein clearing virus]
Length = 2180
Score = 99.0 bits (245), Expect(2) = 8e-31
Identities = 50/77 (64%), Positives = 58/77 (75%)
Frame = +3
Query: 246 LH*PSQLQAKKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILA 425
LH PS+ KKILQT+A D YWS++L+EE N CG ASG FK SEQHYH+ FKEILA
Sbjct: 1676 LHIPSE--GKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILA 1733
Query: 426 VRNGIKKFDFFLRSHNF 476
V+NGIKKF+FFL NF
Sbjct: 1734 VKNGIKKFNFFLIHTNF 1750
Score = 60.8 bits (146), Expect(2) = 8e-31
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G + P HI++EL KFP L+VKQ+QQFLGIVN+IR FIP+
Sbjct: 1590 MDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPE 1636
>ref|NP_127504.1| ORF I polyprotein [Petunia vein clearing virus]
gi|82061579|sp|Q91DM0.1|POLG_PVCV1 RecName: Full=Genome
polyprotein; Contains: RecName: Full=Movement protein;
Short=MP; Contains: RecName: Full=Capsid protein;
Short=CP; Contains: RecName: Full=Aspartic protease;
Short=PR; Contains: RecName: Full=Reverse transcriptase;
Short=RT gi|14574598|gb|AAK68664.1| ORF I polyprotein
[petunia vein clearing virus]
Length = 2179
Score = 99.0 bits (245), Expect(2) = 8e-31
Identities = 50/77 (64%), Positives = 58/77 (75%)
Frame = +3
Query: 246 LH*PSQLQAKKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILA 425
LH PS+ KKILQT+A D YWS++L+EE N CG ASG FK SEQHYH+ FKEILA
Sbjct: 1675 LHIPSE--GKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILA 1732
Query: 426 VRNGIKKFDFFLRSHNF 476
V+NGIKKF+FFL NF
Sbjct: 1733 VKNGIKKFNFFLIHTNF 1749
Score = 60.8 bits (146), Expect(2) = 8e-31
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G + P HI++EL KFP L+VKQ+QQFLGIVN+IR FIP+
Sbjct: 1589 MDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPE 1635
>gb|AAO67369.1| polyprotein 1 [Petunia vein clearing virus]
Length = 1886
Score = 99.0 bits (245), Expect(2) = 8e-31
Identities = 50/77 (64%), Positives = 58/77 (75%)
Frame = +3
Query: 246 LH*PSQLQAKKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILA 425
LH PS+ KKILQT+A D YWS++L+EE N CG ASG FK SEQHYH+ FKEILA
Sbjct: 1676 LHIPSE--GKKILQTDASDQYWSAVLLEEHNGKRKICGFASGKFKVSEQHYHSTFKEILA 1733
Query: 426 VRNGIKKFDFFLRSHNF 476
V+NGIKKF+FFL NF
Sbjct: 1734 VKNGIKKFNFFLIHTNF 1750
Score = 60.8 bits (146), Expect(2) = 8e-31
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G + P HI++EL KFP L+VKQ+QQFLGIVN+IR FIP+
Sbjct: 1590 MDFADGTFSPAGHISLELQKFPDTNLSVKQIQQFLGIVNYIRDFIPE 1636
>ref|XP_004515135.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 159
Score = 88.2 bits (217), Expect(2) = 2e-25
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQTNA D YW +LLIE++N Y GHASG FK +E+HYHT +KE LAV+ GI+KFD
Sbjct: 94 KRILQTNASDHYWGALLIEDINGVKHYYGHASGQFKEAEKHYHTSYKEALAVKLGIQKFD 153
Query: 453 FFLRSH 470
F LR +
Sbjct: 154 FHLRGY 159
Score = 53.5 bits (127), Expect(2) = 2e-25
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = +2
Query: 89 KSSNFLG*STSSDNLSP---RQPNTLAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTI 259
K FLG N P R + L+QL RK PPPW HI+A + LK++ Q+PP L I
Sbjct: 30 KIQQFLGIINYIRNFIPKLARYTSPLSQLLRKNPPPWEPKHIEAFKALKRIAQTPPALKI 89
Query: 260 PTTGKK 277
P GK+
Sbjct: 90 PGNGKR 95
Score = 64.7 bits (156), Expect = 2e-08
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G+Y P PHIA ELL FP++ LT ++QQFLGI+N+IR FIPK
Sbjct: 1 MHFSQGKYQPQPHIARELLNFPEENLTFIKIQQFLGIINYIRNFIPK 47
>ref|XP_004500104.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1170
Score = 95.5 bits (236), Expect(2) = 4e-25
Identities = 47/92 (51%), Positives = 61/92 (66%), Gaps = 13/92 (14%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQT+A D YW ++LIEE+N YCGHASG FK +E+HYHT +KE LAV+ GI+KFD
Sbjct: 970 KRILQTDASDHYWGAVLIEEINGVKHYCGHASGQFKEAEKHYHTTYKEALAVKLGIQKFD 1029
Query: 453 FFLRSHNF-------------KFKWIIPPSPE 509
F LR + F +FK +PP P+
Sbjct: 1030 FHLRGYQFEVQMDNSSFPRILEFKNKMPPDPQ 1061
Score = 45.4 bits (106), Expect(2) = 4e-25
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 170 RKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTGKK 277
+K PPPW H +AV+ LK++ Q+PP L IP GK+
Sbjct: 936 KKNPPPWEPKHTEAVKALKRIAQTPPALKIPGNGKR 971
>ref|XP_004490917.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 279
Score = 94.0 bits (232), Expect(2) = 5e-25
Identities = 42/69 (60%), Positives = 54/69 (78%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQT+A D YW ++LIEE+N YCGHASG FK +E+HYHT +KE LAV+ GI+KFD
Sbjct: 203 KRILQTDASDHYWGAVLIEEINGVKYYCGHASGQFKEAEKHYHTTYKEALAVKLGIQKFD 262
Query: 453 FFLRSHNFK 479
F LR + F+
Sbjct: 263 FHLRGYQFE 271
Score = 46.6 bits (109), Expect(2) = 5e-25
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 101 FLG*STSSDNLSPR---QPNTLAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTG 271
FLG N P+ + L+QL +K PPPW H +AV+ LK++ Q+PP L IP
Sbjct: 143 FLGIINYIRNFIPKLAKYTSPLSQLLKKNPPPWELKHTEAVKTLKRIAQTPPALKIPGNE 202
Query: 272 KK 277
K+
Sbjct: 203 KR 204
Score = 70.5 bits (171), Expect = 3e-10
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G+Y P PHIA ELL FP + LTVKQ+QQFLGI+N+IR FIPK
Sbjct: 110 MHFSQGKYQPQPHIAQELLNFPDENLTVKQIQQFLGIINYIRNFIPK 156
>ref|XP_004511185.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 803
Score = 90.9 bits (224), Expect(2) = 1e-23
Identities = 46/91 (50%), Positives = 59/91 (64%), Gaps = 13/91 (14%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQT+A D YW ++LIEE++ YCGHASG FK +E+HYHT +KE LAV+ GI KFD
Sbjct: 713 KRILQTDAIDHYWGAILIEEIDGVKHYCGHASGQFKEAEKHYHTTYKEALAVKLGIHKFD 772
Query: 453 FFLRSHNF-------------KFKWIIPPSP 506
F LR + F +FK +PP P
Sbjct: 773 FHLRGYQFEVQMDNSSFPRILEFKNKMPPDP 803
Score = 45.1 bits (105), Expect(2) = 1e-23
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +2
Query: 101 FLG*STSSDNLSP---RQPNTLAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTG 271
FLG N P R + L+QL +K PW H +AV+ LK++ Q+PP L IP G
Sbjct: 653 FLGIINYIRNFIPKLARYTSPLSQLLKKNSSPWEPKHTEAVKTLKRIAQTPPALKIPGNG 712
Query: 272 KK 277
K+
Sbjct: 713 KR 714
Score = 67.0 bits (162), Expect = 3e-09
Identities = 30/47 (63%), Positives = 36/47 (76%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G+Y PHIA ELL FP + LTVKQ+QQFLGI+N+IR FIPK
Sbjct: 620 MHFSQGKYQHQPHIAQELLNFPDENLTVKQIQQFLGIINYIRNFIPK 666
>ref|XP_004509900.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 181
Score = 90.1 bits (222), Expect(2) = 4e-23
Identities = 40/69 (57%), Positives = 52/69 (75%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQT+A D YW ++LIEE+ YCGHASG FK +E+HYHT +KE LAV+ GI+ FD
Sbjct: 112 KRILQTDASDHYWGTILIEEIKGIKHYCGHASGQFKEAEKHYHTTYKEALAVKLGIQNFD 171
Query: 453 FFLRSHNFK 479
F LR + F+
Sbjct: 172 FHLRGYQFE 180
Score = 43.9 bits (102), Expect(2) = 4e-23
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 101 FLG*STSSDNLSPR---QPNTLAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTG 271
FLG N P+ + L+QL K P PW H +AV+ LK++ +PP L IP G
Sbjct: 52 FLGIINYIRNFIPKLAKYTSPLSQLLSKNPSPWKPKHTEAVKALKRIAHTPPALKIPGNG 111
Query: 272 KK 277
K+
Sbjct: 112 KR 113
Score = 68.6 bits (166), Expect = 1e-09
Identities = 29/47 (61%), Positives = 37/47 (78%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G++ P PHIA ELL FP + LT+KQ+QQFLGI+N+IR FIPK
Sbjct: 19 IHFSQGKFQPQPHIAQELLNFPDENLTIKQIQQFLGIINYIRNFIPK 65
>ref|YP_008992015.1| RNase_H [Citrus endogenous pararetrovirus]
Length = 124
Score = 85.9 bits (211), Expect(2) = 3e-21
Identities = 39/66 (59%), Positives = 50/66 (75%)
Frame = +3
Query: 279 ILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFDFF 458
ILQT+A D YWS++L+EE N +C HASG FK SE++YH ++KEIL V+ GIKKF+F
Sbjct: 1 ILQTDASDQYWSAVLLEEHNGKRHFCAHASGQFKHSEKNYHVIYKEILTVKYGIKKFEFH 60
Query: 459 LRSHNF 476
L SH F
Sbjct: 61 LISHTF 66
Score = 42.0 bits (97), Expect(2) = 3e-21
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +2
Query: 473 F*VQMDNSSFPRALEFKNKVLPDPQVLKLK 562
F + MDNSSFPR +FKNK+L D Q+L LK
Sbjct: 66 FLINMDNSSFPRIFDFKNKLLLDKQLLNLK 95
>ref|XP_002300438.2| hypothetical protein POPTR_0001s38890g [Populus trichocarpa]
gi|550349213|gb|EEE85243.2| hypothetical protein
POPTR_0001s38890g [Populus trichocarpa]
Length = 309
Score = 85.5 bits (210), Expect(2) = 1e-20
Identities = 41/72 (56%), Positives = 54/72 (75%)
Frame = +3
Query: 261 QLQAKKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGI 440
Q QA+ ILQT+ D YWS +L+E+ N H CG+ SGSFK SE HYH+ FKEILAV+ GI
Sbjct: 20 QTQAR-ILQTDVSDKYWSDVLLEDKNGHRHICGYKSGSFKESETHYHSTFKEILAVKYGI 78
Query: 441 KKFDFFLRSHNF 476
+KF+F L +++F
Sbjct: 79 QKFEFHLVAYHF 90
Score = 40.4 bits (93), Expect(2) = 1e-20
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = +2
Query: 473 F*VQMDNSSFPRALEFKNKVLPDPQVLKLKE 565
F V MD SSFP+ L+FK K+LP PQ+L+L E
Sbjct: 90 FTVIMDCSSFPKMLQFKRKMLPHPQLLRLAE 120
>ref|XP_006393720.1| hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
gi|557090298|gb|ESQ31006.1| hypothetical protein
EUTSA_v10012231mg, partial [Eutrema salsugineum]
Length = 1904
Score = 71.2 bits (173), Expect(2) = 2e-20
Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Frame = +3
Query: 240 PLLH*PSQLQAKKILQTNAGDLYWSSLLIE-ELNDHL*YCGHASGSFKTSEQHYHTVFKE 416
P L PS+ K+ILQT+A D YW ++L+E + CG+ SG FK SE+HYH+ +KE
Sbjct: 1520 PSLKIPSK--GKRILQTDASDCYWGAVLLEKDEKGKRSICGYKSGVFKDSEKHYHSTYKE 1577
Query: 417 ILAVRNGIKKFDFFLRSHNF 476
ILAV+ GI+KF+ + +F
Sbjct: 1578 ILAVKRGIEKFESHIVGQHF 1597
Score = 53.5 bits (127), Expect(2) = 2e-20
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFI 135
+ G+Y+ PHIA +L +FP D L+ KQVQQFLG+VN++ +FI
Sbjct: 1436 MHISKGQYHLQPHIATQLNEFPDDKLSFKQVQQFLGVVNYMAEFI 1480
>ref|XP_004509642.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 168
Score = 63.9 bits (154), Expect(2) = 1e-17
Identities = 29/52 (55%), Positives = 37/52 (71%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAV 428
K+ LQT+ D Y ++LIEE+N YCGHA G FK +E+HYHT +KE LAV
Sbjct: 112 KRTLQTDVSDHYRGAVLIEEINGVKHYCGHACGQFKEAEKHYHTTYKEALAV 163
Score = 52.0 bits (123), Expect(2) = 1e-17
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 101 FLG*STSSDNLSPR---QPNTLAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTG 271
FLG N PR + L+QL RK PPPW H AV+ LK++ Q+PP L IP G
Sbjct: 52 FLGIINYIRNFIPRLARYTSPLSQLLRKNPPPWDPKHTDAVKALKRIAQTPPALKIPRNG 111
Query: 272 KK 277
K+
Sbjct: 112 KR 113
Score = 65.1 bits (157), Expect = 1e-08
Identities = 28/47 (59%), Positives = 36/47 (76%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G+Y P PH+A ELL F + LTVKQ+QQFLGI+N+IR FIP+
Sbjct: 19 MHFSQGKYQPQPHVAKELLNFLDENLTVKQIQQFLGIINYIRNFIPR 65
>ref|XP_004499727.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 1645
Score = 60.5 bits (145), Expect(2) = 4e-16
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQH---YHTVFKEILAVRNGIK 443
K+ILQT+A D YW ++LIEE+N YCGHASG FK +E+H V + AV N I+
Sbjct: 1582 KRILQTDASDHYWGAVLIEEINGVKYYCGHASGQFKEAEKHCPLMEAVEARLSAVENSIR 1641
Query: 444 K 446
+
Sbjct: 1642 R 1642
Score = 50.1 bits (118), Expect(2) = 4e-16
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 101 FLG*STSSDNLSP---RQPNTLAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTG 271
FLG N P R + L+QL RK PPPW + +AV+ LK++ Q+PP L IP G
Sbjct: 1522 FLGIINYIRNFIPKLARYTSPLSQLLRKNPPPWEPKYTEAVKTLKRIAQTPPALKIPGNG 1581
Query: 272 KK 277
K+
Sbjct: 1582 KR 1583
Score = 70.5 bits (171), Expect = 3e-10
Identities = 31/47 (65%), Positives = 37/47 (78%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G+Y P PHIA ELL FP + LTVKQ+QQFLGI+N+IR FIPK
Sbjct: 1489 MHFSQGKYQPHPHIAQELLNFPDENLTVKQIQQFLGIINYIRNFIPK 1535
>gb|AHN13810.1| reverse transcriptase [Aristotelia chilensis vein clearing virus]
Length = 758
Score = 87.4 bits (215), Expect = 2e-15
Identities = 39/80 (48%), Positives = 56/80 (70%)
Frame = +3
Query: 273 KKILQTNAGDLYWSSLLIEELNDHL*YCGHASGSFKTSEQHYHTVFKEILAVRNGIKKFD 452
K+ILQT+A D YW ++L+EE ++H CG+ SG FK SE+HYH+ FKEILAV+ GI+KF
Sbjct: 290 KRILQTDASDEYWGAILLEERDNHRQICGYKSGHFKDSEKHYHSTFKEILAVKRGIEKFQ 349
Query: 453 FFLRSHNFKFKWIIPPSPEL 512
L H+F+ + + P +
Sbjct: 350 IHLIGHHFQIEMDMSSFPRM 369
Score = 49.3 bits (116), Expect(2) = 8e-11
Identities = 24/45 (53%), Positives = 30/45 (66%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFI 135
+ G+Y PHIA +L FP + LT KQVQQFLGIVN++ FI
Sbjct: 197 MHIHKGQYSLQPHIAKQLEDFPDENLTKKQVQQFLGIVNYMTDFI 241
Score = 43.1 bits (100), Expect(2) = 8e-11
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Frame = +2
Query: 155 LAQLHRKAPPPWSSVHIKAVQQLKQLCQSPPPLTIPTTGKKNPPNKCR*S-----LLEFS 319
L Q+ +K P W++V AV+++K L Q+ P IP+ GK+ LLE
Sbjct: 251 LQQILKKNPLAWTNVQTAAVRKIKALTQNLPAQQIPSNGKRILQTDASDEYWGAILLEER 310
Query: 320 SD*RT**PPLILWPC*W*FQDIRTTLPHCVQRNSCSQKWDQKI*LFPSFPQF*VQMDNSS 499
+ R I F+D + ++ +K + F ++MD SS
Sbjct: 311 DNHRQ-----ICGYKSGHFKDSEKHYHSTFKEILAVKRGIEKFQIHLIGHHFQIEMDMSS 365
Query: 500 FPRALEFKNKVLPDPQVLK 556
FPR L FK K +P+ Q+L+
Sbjct: 366 FPRMLHFKQKTIPNSQLLR 384
>ref|XP_004488974.1| PREDICTED: genome polyprotein-like [Cicer arietinum]
Length = 260
Score = 64.7 bits (156), Expect(2) = 4e-13
Identities = 30/47 (63%), Positives = 35/47 (74%)
Frame = +1
Query: 1 LQFKSGRYYPGPHIAIELLKFPKDYLTVKQVQQFLGIVNFIRQFIPK 141
+ F G+Y P PHIA ELL F + LTVKQ+QQFLGIVN+I FIPK
Sbjct: 180 MHFSQGKYQPQPHIAQELLNFSDENLTVKQIQQFLGIVNYIWNFIPK 226
Score = 35.8 bits (81), Expect(2) = 4e-13
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 140 RQPNTLAQLHRKAPPPWSSVHIKAVQQLK 226
R + L+QL RK PPPW HI+AV+ LK
Sbjct: 229 RYTSPLSQLLRKNPPPWEPKHIEAVKTLK 257