BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00050439
         (245 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004308947.1| PREDICTED: pentatricopeptide repeat-containi...    80   2e-13
ref|XP_002512332.1| pentatricopeptide repeat-containing protein,...    80   4e-13
ref|XP_006435776.1| hypothetical protein CICLE_v10033792mg [Citr...    74   2e-11
ref|XP_007008912.1| Tetratricopeptide repeat-like superfamily pr...    72   6e-11
ref|XP_006356467.1| PREDICTED: pentatricopeptide repeat-containi...    71   1e-10
gb|EXC04708.1| hypothetical protein L484_009901 [Morus notabilis]      70   2e-10
ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251...    69   5e-10
emb|CBI25450.3| unnamed protein product [Vitis vinifera]               69   5e-10
emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]    69   5e-10
ref|XP_002311557.2| pentatricopeptide repeat-containing family p...    68   2e-09
ref|XP_004235452.1| PREDICTED: pentatricopeptide repeat-containi...    66   6e-09
gb|EYU43433.1| hypothetical protein MIMGU_mgv1a021376mg [Mimulus...    61   2e-07
ref|XP_003533266.1| PREDICTED: pentatricopeptide repeat-containi...    57   3e-06

>ref|XP_004308947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56030-like [Fragaria vesca subsp. vesca]
          Length = 331

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 43/74 (58%), Positives = 49/74 (66%)
 Frame = +3

Query: 24  SYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPI 203
           S  + PTSA YD LV+ AG SRD++ LHHLL KR KD CFNT  TFKFIT  E   L  +
Sbjct: 31  SIPDEPTSAHYDLLVNAAGESRDFDNLHHLLTKRVKDHCFNTVNTFKFITNSE-ASLSLL 89

Query: 204 PYLIQTLSGLESGF 245
           P L QTL+ L  GF
Sbjct: 90  PKLSQTLARLPKGF 103


>ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548293|gb|EEF49784.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 39/73 (53%), Positives = 50/73 (68%)
 Frame = +3

Query: 24  SYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPI 203
           S+ + PT+A YD LV+ AG  RD++ LHHLLNKR +D CFNT  TFKFIT  +   L  +
Sbjct: 320 SFPDKPTAAYYDGLVNAAGHERDFKTLHHLLNKRVRDHCFNTTNTFKFITNTD-NSLSVL 378

Query: 204 PYLIQTLSGLESG 242
             LIQTL+ L+ G
Sbjct: 379 DDLIQTLARLDKG 391


>ref|XP_006435776.1| hypothetical protein CICLE_v10033792mg [Citrus clementina]
           gi|557537972|gb|ESR49016.1| hypothetical protein
           CICLE_v10033792mg [Citrus clementina]
          Length = 556

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 37/74 (50%), Positives = 49/74 (66%)
 Frame = +3

Query: 24  SYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPI 203
           ++ + PTSA YD+LV+ AG  RD E + +LLNKRA+D CFNT  TF FIT  E   L  +
Sbjct: 28  AFPDEPTSAYYDDLVNAAGHERDLETVRYLLNKRARDCCFNTANTFNFITNTE-NSLSVL 86

Query: 204 PYLIQTLSGLESGF 245
             L +TL+ L+ GF
Sbjct: 87  SDLCRTLARLDKGF 100


>ref|XP_007008912.1| Tetratricopeptide repeat-like superfamily protein, putative
           [Theobroma cacao] gi|508725825|gb|EOY17722.1|
           Tetratricopeptide repeat-like superfamily protein,
           putative [Theobroma cacao]
          Length = 361

 Score = 72.4 bits (176), Expect = 6e-11
 Identities = 37/74 (50%), Positives = 48/74 (64%)
 Frame = +3

Query: 21  QSYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDP 200
           + + + PTSA YDE V  AGRS D   + HLLNKR +DGCFNT KTFKF+T  E      
Sbjct: 56  EPFPDEPTSAYYDEQVYKAGRSGDLVTVGHLLNKRVRDGCFNTTKTFKFLTATE-SSFSI 114

Query: 201 IPYLIQTLSGLESG 242
           +  L++T+S L+ G
Sbjct: 115 LDDLVRTVSRLDKG 128


>ref|XP_006356467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g56030-like isoform X1 [Solanum tuberosum]
           gi|565380133|ref|XP_006356468.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At3g56030-like isoform X2 [Solanum tuberosum]
          Length = 329

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 34/71 (47%), Positives = 49/71 (69%)
 Frame = +3

Query: 33  EVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPIPYL 212
           +VP+  +YDE ++ AGR  D+  +HHLLNKRA+DG FNT  TFKFI+      LD    L
Sbjct: 33  DVPSCTNYDERINKAGREGDFTTVHHLLNKRARDGFFNTNNTFKFISTNNVSILDD---L 89

Query: 213 IQTLSGLESGF 245
           ++T++ L++GF
Sbjct: 90  LETIARLDNGF 100


>gb|EXC04708.1| hypothetical protein L484_009901 [Morus notabilis]
          Length = 331

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 32/69 (46%), Positives = 47/69 (68%)
 Frame = +3

Query: 39  PTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPIPYLIQ 218
           P +A YDE+V+ AGRS +Y+ L  LLN+R KDGC+NT  TF F+T V  + +  +  L +
Sbjct: 37  PATAHYDEMVNAAGRSGNYDELRRLLNRRVKDGCYNTTSTFNFVT-VGDDSISAVGRLCE 95

Query: 219 TLSGLESGF 245
           TL+ L+ G+
Sbjct: 96  TLARLDKGY 104


>ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251820 [Vitis vinifera]
          Length = 613

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 37/79 (46%), Positives = 50/79 (63%)
 Frame = +3

Query: 9   THHHQSYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQE 188
           T +   YE  PT A YD L++ AGR+RD+ ++ +LLNKR +DGCFNT  TF FIT  +  
Sbjct: 27  TQNPNPYE--PTVAYYDNLINTAGRNRDFASVCNLLNKRVRDGCFNTNHTFDFITNTD-A 83

Query: 189 ELDPIPYLIQTLSGLESGF 245
            L  +  L Q L+ L+ GF
Sbjct: 84  GLSVLDELSQALAHLDKGF 102


>emb|CBI25450.3| unnamed protein product [Vitis vinifera]
          Length = 527

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 37/79 (46%), Positives = 50/79 (63%)
 Frame = +3

Query: 9   THHHQSYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQE 188
           T +   YE  PT A YD L++ AGR+RD+ ++ +LLNKR +DGCFNT  TF FIT  +  
Sbjct: 27  TQNPNPYE--PTVAYYDNLINTAGRNRDFASVCNLLNKRVRDGCFNTNHTFDFITNTD-A 83

Query: 189 ELDPIPYLIQTLSGLESGF 245
            L  +  L Q L+ L+ GF
Sbjct: 84  GLSVLDELSQALAHLDKGF 102


>emb|CAN73347.1| hypothetical protein VITISV_037919 [Vitis vinifera]
          Length = 330

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 37/79 (46%), Positives = 50/79 (63%)
 Frame = +3

Query: 9   THHHQSYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQE 188
           T +   YE  PT A YD L++ AGR+RD+ ++ +LLNKR +DGCFNT  TF FIT  +  
Sbjct: 27  TQNPNPYE--PTVAYYDNLINTAGRNRDFASVCNLLNKRVRDGCFNTNHTFDFITNTD-A 83

Query: 189 ELDPIPYLIQTLSGLESGF 245
            L  +  L Q L+ L+ GF
Sbjct: 84  GLSVLDELSQALAHLDKGF 102


>ref|XP_002311557.2| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550333038|gb|EEE88924.2|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 216

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 34/74 (45%), Positives = 48/74 (64%)
 Frame = +3

Query: 24  SYEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPI 203
           ++  +PTSA YD+L + A   R++  L +LLNKR +D CFNT  T KFIT   +  L  +
Sbjct: 30  TFPNLPTSAYYDDLSNTARHKRNFSKLRYLLNKRVRDHCFNTTSTLKFIT-TSETSLSIL 88

Query: 204 PYLIQTLSGLESGF 245
             LIQTL+ L++GF
Sbjct: 89  ADLIQTLARLDNGF 102


>ref|XP_004235452.1| PREDICTED: pentatricopeptide repeat-containing protein At2g40240,
           mitochondrial-like [Solanum lycopersicum]
          Length = 366

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 32/71 (45%), Positives = 46/71 (64%)
 Frame = +3

Query: 33  EVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPIPYL 212
           +VP+  +YDE ++ AGR  D+  +H LLNKRA+DG FNT  TFKFI       LD    L
Sbjct: 33  DVPSCTNYDERINKAGREGDFTTVHQLLNKRARDGFFNTNNTFKFIYTTNVSILDD---L 89

Query: 213 IQTLSGLESGF 245
           ++ ++ L++GF
Sbjct: 90  LEIIARLDNGF 100


>gb|EYU43433.1| hypothetical protein MIMGU_mgv1a021376mg [Mimulus guttatus]
          Length = 322

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 24/46 (52%), Positives = 35/46 (76%)
 Frame = +3

Query: 33  EVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFI 170
           ++P+SA YD+L++ AG+  D+ ++ HLL+KR   GC NT KTFKFI
Sbjct: 27  QIPSSAHYDDLINAAGKQGDFASVRHLLSKRLSQGCLNTNKTFKFI 72


>ref|XP_003533266.1| PREDICTED: pentatricopeptide repeat-containing protein At2g40240,
           mitochondrial-like [Glycine max]
          Length = 332

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 31/72 (43%), Positives = 42/72 (58%)
 Frame = +3

Query: 27  YEEVPTSASYDELVSVAGRSRDYEALHHLLNKRAKDGCFNTRKTFKFITEVEQEELDPIP 206
           + + PT+A YD+L   AG S D+ AL  +LNKR +DG  NT+ TF F+ +        I 
Sbjct: 27  FPDDPTAAYYDQLAFAAGDSGDFHALRDVLNKRIQDGFLNTKITFNFLKDTNFSP-SVID 85

Query: 207 YLIQTLSGLESG 242
            L+QTLS L  G
Sbjct: 86  NLVQTLSHLNQG 97