BLASTX nr result
ID: Cocculus23_contig00050413
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00050413
(279 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007042438.1| Tetratricopeptide repeat (TPR)-like superfam... 85 1e-14
ref|XP_004250798.1| PREDICTED: pentatricopeptide repeat-containi... 84 2e-14
ref|XP_006343488.1| PREDICTED: pentatricopeptide repeat-containi... 81 2e-13
emb|CBI25078.3| unnamed protein product [Vitis vinifera] 80 3e-13
ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containi... 79 5e-13
ref|XP_004296063.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera] 77 2e-12
gb|EXC20588.1| hypothetical protein L484_027143 [Morus notabilis] 77 2e-12
ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
ref|XP_004493379.1| PREDICTED: pentatricopeptide repeat-containi... 75 1e-11
ref|XP_006487111.1| PREDICTED: pentatricopeptide repeat-containi... 73 5e-11
emb|CBI32403.3| unnamed protein product [Vitis vinifera] 72 6e-11
ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi... 72 8e-11
ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containi... 72 1e-10
ref|XP_003624942.1| Pentatricopeptide repeat-containing protein ... 69 7e-10
gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula] 69 7e-10
ref|XP_007146392.1| hypothetical protein PHAVU_006G036400g [Phas... 63 4e-08
ref|XP_006856148.1| hypothetical protein AMTR_s00059p00167980 [A... 57 3e-06
>ref|XP_007042438.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao] gi|508706373|gb|EOX98269.1| Tetratricopeptide
repeat (TPR)-like superfamily protein [Theobroma cacao]
Length = 820
Score = 84.7 bits (208), Expect = 1e-14
Identities = 43/77 (55%), Positives = 57/77 (74%)
Frame = +3
Query: 48 TNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDV 227
+NG E+++KS+ DF+HLF SC +H AKRLH L++VSGKA +IF S +LV LYA L DV
Sbjct: 38 SNGCEDNDKSI--DFNHLFKSCTQLHLAKRLHALVLVSGKAQSIFISAKLVNLYAYLCDV 95
Query: 228 SSSYLAFGQIRKKNVFT 278
S S F QI +K+V+T
Sbjct: 96 SFSRRTFDQINEKDVYT 112
>ref|XP_004250798.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Solanum lycopersicum]
Length = 911
Score = 84.0 bits (206), Expect = 2e-14
Identities = 44/89 (49%), Positives = 56/89 (62%)
Frame = +3
Query: 12 RLCSSFSKPSIVTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFST 191
+L SS S +++NG+ + K FDF HLF SC ++ K LH LL+VSGKA +IF T
Sbjct: 116 KLYSSGSYNEVLSNGVASKKKE--FDFEHLFHSCTKIYILKCLHALLIVSGKAQSIFIGT 173
Query: 192 RLVKLYAELGDVSSSYLAFGQIRKKNVFT 278
RLV LYA LGDVS S F I K+ +T
Sbjct: 174 RLVNLYAHLGDVSLSQKTFCMIENKDAYT 202
>ref|XP_006343488.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like isoform X1 [Solanum tuberosum]
gi|565353132|ref|XP_006343489.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like isoform X2 [Solanum tuberosum]
gi|565353134|ref|XP_006343490.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like isoform X3 [Solanum tuberosum]
gi|565353136|ref|XP_006343491.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like isoform X4 [Solanum tuberosum]
Length = 831
Score = 80.9 bits (198), Expect = 2e-13
Identities = 43/89 (48%), Positives = 55/89 (61%)
Frame = +3
Query: 12 RLCSSFSKPSIVTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFST 191
+L SS S +++NG+ + K FDF LF SC ++ K LH LL+VSGKA +IF T
Sbjct: 36 KLYSSGSYNEVLSNGVASKKKD--FDFERLFHSCTKIYILKCLHALLIVSGKAQSIFIGT 93
Query: 192 RLVKLYAELGDVSSSYLAFGQIRKKNVFT 278
RLV LYA LGDVS S F I K+ +T
Sbjct: 94 RLVNLYAHLGDVSLSQKTFCMIENKDAYT 122
>emb|CBI25078.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 80.1 bits (196), Expect = 3e-13
Identities = 44/83 (53%), Positives = 54/83 (65%)
Frame = +3
Query: 30 SKPSIVTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLY 209
S P + G+EN N+ + DF+ LF SC AKRLH LLVVSGK + F S RLV LY
Sbjct: 35 SSPHFSSYGLENQNEEI--DFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLY 92
Query: 210 AELGDVSSSYLAFGQIRKKNVFT 278
A LGDVS S F QI++K+V+T
Sbjct: 93 ASLGDVSLSRGTFDQIQRKDVYT 115
>ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
gi|449476583|ref|XP_004154777.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like [Cucumis sativus]
Length = 816
Score = 79.3 bits (194), Expect = 5e-13
Identities = 40/89 (44%), Positives = 58/89 (65%), Gaps = 2/89 (2%)
Frame = +3
Query: 18 CSSFSKPSI--VTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFST 191
CS +S + +G+EN+ + + DF+ +FL C VH AK+LH LLVVSGK +IF S
Sbjct: 22 CSLYSATAAPKYLDGVENEKREI--DFNRIFLYCTKVHLAKQLHALLVVSGKTQSIFLSA 79
Query: 192 RLVKLYAELGDVSSSYLAFGQIRKKNVFT 278
+L+ YA LGD+ + L F QI+ K+V+T
Sbjct: 80 KLINRYAFLGDIPHARLTFDQIQTKDVYT 108
>ref|XP_004296063.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Fragaria vesca subsp. vesca]
Length = 867
Score = 78.2 bits (191), Expect = 1e-12
Identities = 41/78 (52%), Positives = 53/78 (67%)
Frame = +3
Query: 45 VTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGD 224
V++G N+ + + D HLF SC +H AKRLH LLVVSGKA +IF S +LV YA LGD
Sbjct: 85 VSDGFGNETRRV--DIGHLFQSCTKLHHAKRLHALLVVSGKAQDIFLSAKLVNQYAYLGD 142
Query: 225 VSSSYLAFGQIRKKNVFT 278
VS S AF + +K+V+T
Sbjct: 143 VSFSRRAFDSMPRKDVYT 160
>emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
Length = 891
Score = 77.4 bits (189), Expect = 2e-12
Identities = 43/83 (51%), Positives = 53/83 (63%)
Frame = +3
Query: 30 SKPSIVTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLY 209
S P + G+ N N+ + F+F LF S FAK LH LLVV+GK +IF STRLV LY
Sbjct: 104 SSPQFSSYGLGNQNEEIDFNF--LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLY 161
Query: 210 AELGDVSSSYLAFGQIRKKNVFT 278
A LGDVS S F QI +K+V+T
Sbjct: 162 ANLGDVSLSRCTFDQIPQKDVYT 184
>gb|EXC20588.1| hypothetical protein L484_027143 [Morus notabilis]
Length = 778
Score = 77.0 bits (188), Expect = 2e-12
Identities = 37/64 (57%), Positives = 47/64 (73%)
Frame = +3
Query: 87 DFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSYLAFGQIRKK 266
DF+ LF+SC VH AKRLH LLVVSGK ++F STRLV LY+ GDVS S F Q+ +K
Sbjct: 7 DFNLLFVSCTKVHLAKRLHALLVVSGKVKDMFLSTRLVNLYSYFGDVSLSRRTFDQLPEK 66
Query: 267 NVFT 278
+++T
Sbjct: 67 DIYT 70
>ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 891
Score = 75.5 bits (184), Expect = 7e-12
Identities = 42/82 (51%), Positives = 52/82 (63%)
Frame = +3
Query: 30 SKPSIVTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLY 209
S P + G+ N N+ + F+F LF S FAK LH LLVV+GK +IF STRLV LY
Sbjct: 104 SSPQFSSYGLGNQNEEIDFNF--LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLY 161
Query: 210 AELGDVSSSYLAFGQIRKKNVF 275
A LGDVS S F QI +K+V+
Sbjct: 162 ANLGDVSLSRCTFDQIPQKDVY 183
>ref|XP_004493379.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Cicer arietinum]
Length = 824
Score = 74.7 bits (182), Expect = 1e-11
Identities = 38/87 (43%), Positives = 50/87 (57%)
Frame = +3
Query: 18 CSSFSKPSIVTNGIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRL 197
C S S S+ D+ DF+ LF SC NV+ K+LH LLVV GK+ N+ ST+L
Sbjct: 29 CFSASTNSLQMTSHNFDSNKKETDFNFLFNSCINVNVTKQLHALLVVLGKSQNVVLSTKL 88
Query: 198 VKLYAELGDVSSSYLAFGQIRKKNVFT 278
+ LY GD+S S F I KKN+F+
Sbjct: 89 INLYVTFGDISLSRSTFNHIHKKNIFS 115
>ref|XP_006487111.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Citrus sinensis]
Length = 820
Score = 72.8 bits (177), Expect = 5e-11
Identities = 36/71 (50%), Positives = 45/71 (63%)
Frame = +3
Query: 66 DNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSYLA 245
+N+S DF LF SC +H KRLH LL+VSGK +F ST+LV YA LGD+S S
Sbjct: 42 ENESREIDFDDLFQSCTKLHHVKRLHALLLVSGKIKTVFSSTKLVNFYANLGDLSFSRHT 101
Query: 246 FGQIRKKNVFT 278
F I +NV+T
Sbjct: 102 FDHISYRNVYT 112
>emb|CBI32403.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 72.4 bits (176), Expect = 6e-11
Identities = 40/74 (54%), Positives = 49/74 (66%)
Frame = +3
Query: 54 GIENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSS 233
G+ N N+ + F+F LF S FAK LH LLVV+GK +IF STRLV LYA LGDVS
Sbjct: 12 GLGNQNEEIDFNF--LFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSL 69
Query: 234 SYLAFGQIRKKNVF 275
S F QI +K+V+
Sbjct: 70 SRCTFDQIPQKDVY 83
>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 72.0 bits (175), Expect = 8e-11
Identities = 39/69 (56%), Positives = 46/69 (66%)
Frame = +3
Query: 72 KSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSYLAFG 251
K+ DF+ LF SC AKRLH LLVVSGK + F S RLV LYA LGDVS S F
Sbjct: 73 KNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFD 132
Query: 252 QIRKKNVFT 278
QI++K+V+T
Sbjct: 133 QIQRKDVYT 141
>ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like isoform X1 [Glycine max]
gi|571544149|ref|XP_006602168.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like isoform X2 [Glycine max]
gi|571544153|ref|XP_006602169.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like isoform X3 [Glycine max]
gi|571544157|ref|XP_006602170.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like isoform X4 [Glycine max]
gi|571544163|ref|XP_006602171.1| PREDICTED:
pentatricopeptide repeat-containing protein
At4g33990-like isoform X5 [Glycine max]
Length = 824
Score = 71.6 bits (174), Expect = 1e-10
Identities = 34/72 (47%), Positives = 50/72 (69%)
Frame = +3
Query: 63 NDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSYL 242
N N ++ DF+ +F SC N++ AK+LH LL+V GKA ++ T+LV LYA LGD+S S
Sbjct: 45 NKNNNVVVDFNLVFRSCTNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSST 104
Query: 243 AFGQIRKKNVFT 278
F I++KN+F+
Sbjct: 105 TFKHIQRKNIFS 116
>ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/64 (51%), Positives = 43/64 (67%)
Frame = +3
Query: 87 DFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSYLAFGQIRKK 266
DF+ LF SC NV+ K+LH LL+V GK+ NI ST+L+ LY GD+S S F I KK
Sbjct: 24 DFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKK 83
Query: 267 NVFT 278
N+F+
Sbjct: 84 NIFS 87
>gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 68.9 bits (167), Expect = 7e-10
Identities = 33/64 (51%), Positives = 43/64 (67%)
Frame = +3
Query: 87 DFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSYLAFGQIRKK 266
DF+ LF SC NV+ K+LH LL+V GK+ NI ST+L+ LY GD+S S F I KK
Sbjct: 24 DFNALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKK 83
Query: 267 NVFT 278
N+F+
Sbjct: 84 NIFS 87
>ref|XP_007146392.1| hypothetical protein PHAVU_006G036400g [Phaseolus vulgaris]
gi|561019615|gb|ESW18386.1| hypothetical protein
PHAVU_006G036400g [Phaseolus vulgaris]
Length = 816
Score = 63.2 bits (152), Expect = 4e-08
Identities = 34/73 (46%), Positives = 47/73 (64%)
Frame = +3
Query: 60 ENDNKSLGFDFHHLFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSY 239
+ DNK+ + +F SC ++ AK+LH LL V GKA N+ T+LV LYA LGD+S S
Sbjct: 41 DRDNKN-----NVVFHSCTDIGNAKQLHALLTVLGKAQNVVLFTQLVTLYATLGDLSLSR 95
Query: 240 LAFGQIRKKNVFT 278
F I++KN+FT
Sbjct: 96 NTFEHIQRKNIFT 108
>ref|XP_006856148.1| hypothetical protein AMTR_s00059p00167980 [Amborella trichopoda]
gi|548860007|gb|ERN17615.1| hypothetical protein
AMTR_s00059p00167980 [Amborella trichopoda]
Length = 182
Score = 56.6 bits (135), Expect = 3e-06
Identities = 26/60 (43%), Positives = 41/60 (68%)
Frame = +3
Query: 99 LFLSCANVHFAKRLHGLLVVSGKAHNIFFSTRLVKLYAELGDVSSSYLAFGQIRKKNVFT 278
LF +C+ H A++LH L+VSG++ + +T+L+ LYA LG++ S L+F + KNVFT
Sbjct: 3 LFGACSTTHHARQLHAFLLVSGRSRSPIVATKLISLYAFLGNLPLSLLSFRSLPDKNVFT 62