BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00050359
         (279 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_008992013.1| polyprotein [Citrus endogenous pararetroviru...    56   5e-06

>ref|YP_008992013.1| polyprotein [Citrus endogenous pararetrovirus]
           gi|565672276|gb|AHC13194.1| polyprotein [Citrus
           endogenous pararetrovirus]
          Length = 1812

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 34/93 (36%), Positives = 53/93 (56%)
 Frame = +1

Query: 1   MDSKLDSLTASSTTITTKLAQSISLVEQYHQKLMDQITYLDSTLRYYHGIRHIGPNFAAK 180
           ++SK++ ++  +  + TK+    + ++Q HQ L  +I  LDS LR     R+ GP F  K
Sbjct: 520 INSKVEKISLRTEHLETKVDSISAQLQQIHQNLQSRIAQLDSELRTMLAQRYHGPEFDQK 579

Query: 181 EQEIRQLKDQLCIIEQDLKRKHQPLTLTIPLCS 279
           E+EIR LK +L  IE D K+K    T + P+ S
Sbjct: 580 EREIRHLKAELAQIESD-KQKPSLFTSSPPIPS 611