BLASTX nr result
ID: Cocculus23_contig00050205
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00050205
(284 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_740588.1| ribosomal protein L20 [Platanus occidentalis] g... 101 9e-20
gb|ABY85547.1| ribosomal protein L20 [Silene zawadskii] 98 1e-18
ref|YP_008081388.1| ribosomal protein L20 (chloroplast) [Tetrace... 97 2e-18
gb|AFQ39438.1| ribosomal protein L20, partial [Fragaria moupinen... 97 2e-18
gb|AFQ39426.1| ribosomal protein L20, partial [Fragaria vesca su... 97 2e-18
ref|YP_004286125.1| ribosomal protein L20 [Fragaria vesca subsp.... 97 2e-18
ref|YP_001294121.1| ribosomal protein L20 [Chloranthus spicatus]... 97 2e-18
ref|YP_001294207.1| ribosomal protein L20 [Buxus microphylla] gi... 97 2e-18
gb|AHH24297.1| ribosomal protein L20 (chloroplast) [Japonolirion... 96 5e-18
gb|AFQ39434.1| ribosomal protein L20, partial [Fragaria viridis] 96 5e-18
ref|YP_008081480.1| ribosomal protein L20 (chloroplast) [Trochod... 96 5e-18
gb|ADD30312.1| ribosomal protein L20 [Liquidambar styraciflua] 96 5e-18
ref|YP_002836113.1| ribosomal protein L20 [Megaleranthis sanicul... 96 5e-18
ref|YP_008965515.1| ribosomal protein L20 [Pyrus spinosa] gi|565... 96 7e-18
ref|YP_008082756.1| ribosomal protein L20 [Prinsepia utilis] gi|... 96 7e-18
gb|AFQ39444.1| ribosomal protein L20, partial [Potentilla villosa] 96 7e-18
ref|YP_005296123.1| rpl20 gene product (chloroplast) [Pentactina... 96 7e-18
ref|YP_004842261.1| ribosomal protein L20 [Pyrus pyrifolia] gi|3... 96 7e-18
ref|YP_004021688.1| ribosomal protein L20 [Prunus persica] gi|59... 96 7e-18
ref|YP_002720135.1| rpl20 [Jatropha curcas] gi|224979587|gb|ACN7... 96 7e-18
>ref|YP_740588.1| ribosomal protein L20 [Platanus occidentalis]
gi|122166013|sp|Q09G23.1|RK20_PLAOC RecName: Full=50S
ribosomal protein L20, chloroplastic
gi|114054407|gb|ABI49801.1| ribosomal protein L20
[Platanus occidentalis]
Length = 117
Score = 101 bits (252), Expect = 9e-20
Identities = 51/57 (89%), Positives = 53/57 (92%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKVS 1
LFASTFRGAHSRLTRTT QQKMRALVSAHRDR RQK +FRRLWI RINAVIR+NKVS
Sbjct: 19 LFASTFRGAHSRLTRTTTQQKMRALVSAHRDRGRQKRNFRRLWITRINAVIRENKVS 75
>gb|ABY85547.1| ribosomal protein L20 [Silene zawadskii]
Length = 128
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/56 (85%), Positives = 51/56 (91%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK HFRRLWI RINAVIR+N+V
Sbjct: 19 LFASTFRGAHSRLTRTIAQQKIRALVSAHRDRGRQKRHFRRLWITRINAVIRENRV 74
>ref|YP_008081388.1| ribosomal protein L20 (chloroplast) [Tetracentron sinense]
gi|479279226|gb|AGJ72080.1| ribosomal protein L20
(chloroplast) [Tetracentron sinense]
Length = 117
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/57 (85%), Positives = 51/57 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKVS 1
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIRDN+VS
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRDNRVS 75
>gb|AFQ39438.1| ribosomal protein L20, partial [Fragaria moupinensis]
gi|402239166|gb|AFQ39439.1| ribosomal protein L20,
partial [Fragaria tibetica]
Length = 106
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/56 (87%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIRDNKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRSRQKRDFRRLWITRINAVIRDNKV 74
>gb|AFQ39426.1| ribosomal protein L20, partial [Fragaria vesca subsp. vesca]
gi|402239142|gb|AFQ39427.1| ribosomal protein L20,
partial [Fragaria x bifera] gi|402239144|gb|AFQ39428.1|
ribosomal protein L20, partial [Fragaria iturupensis]
gi|402239146|gb|AFQ39429.1| ribosomal protein L20,
partial [Fragaria x ananassa subsp. cuneifolia]
gi|402239148|gb|AFQ39430.1| ribosomal protein L20,
partial [Fragaria virginiana]
gi|402239150|gb|AFQ39431.1| ribosomal protein L20,
partial [Fragaria bucharica] gi|402239154|gb|AFQ39433.1|
ribosomal protein L20, partial [Fragaria orientalis]
gi|402239158|gb|AFQ39435.1| ribosomal protein L20,
partial [Fragaria nilgerrensis]
gi|402239160|gb|AFQ39436.1| ribosomal protein L20,
partial [Fragaria nipponica] gi|402239162|gb|AFQ39437.1|
ribosomal protein L20, partial [Fragaria chinensis]
gi|402239168|gb|AFQ39440.1| ribosomal protein L20,
partial [Fragaria daltoniana]
gi|402239170|gb|AFQ39441.1| ribosomal protein L20,
partial [Fragaria corymbosa] gi|402239172|gb|AFQ39442.1|
ribosomal protein L20, partial [Fragaria gracilis]
Length = 106
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/56 (87%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIRDNKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRSRQKRDFRRLWITRINAVIRDNKV 74
>ref|YP_004286125.1| ribosomal protein L20 [Fragaria vesca subsp. vesca]
gi|408830268|ref|YP_006883286.1| ribosomal protein L20
(chloroplast) [Fragaria vesca subsp. bracteata]
gi|408830343|ref|YP_006883360.1| ribosomal protein L20
[Fragaria mandshurica] gi|428697222|ref|YP_007025406.1|
ribosomal protein L20 (chloroplast) [Fragaria
chiloensis] gi|428697308|ref|YP_007025491.1| ribosomal
protein L20 (chloroplast) [Fragaria virginiana]
gi|324022800|gb|ADY15374.1| ribosomal protein L20
[Fragaria vesca subsp. vesca]
gi|357198761|gb|AET62677.1| ribosomal protein L20
(chloroplast) [Fragaria chiloensis]
gi|357198847|gb|AET62762.1| ribosomal protein L20
(chloroplast) [Fragaria virginiana]
gi|378554730|gb|AFC17665.1| ribosomal protein L20
(chloroplast) [Fragaria vesca subsp. bracteata]
gi|378554805|gb|AFC17739.1| ribosomal protein L20
[Fragaria mandshurica] gi|407080514|gb|AFS89583.1|
ribosomal protein L20 (chloroplast) [Fragaria
chiloensis]
Length = 117
Score = 97.4 bits (241), Expect = 2e-18
Identities = 49/56 (87%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIRDNKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRSRQKRDFRRLWITRINAVIRDNKV 74
>ref|YP_001294121.1| ribosomal protein L20 [Chloranthus spicatus]
gi|215274693|sp|A6MME5.1|RK20_CHLSC RecName: Full=50S
ribosomal protein L20, chloroplastic
gi|146744211|gb|ABQ43283.1| ribosomal protein L20
[Chloranthus spicatus]
Length = 117
Score = 97.4 bits (241), Expect = 2e-18
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKVS 1
LFASTFRGAHSRLTRT QQKMRALVS HRDR RQKI+FRRLWI RINAV R+N+VS
Sbjct: 19 LFASTFRGAHSRLTRTITQQKMRALVSTHRDRGRQKINFRRLWITRINAVTRENRVS 75
>ref|YP_001294207.1| ribosomal protein L20 [Buxus microphylla]
gi|215274782|sp|A6MM59.1|RK20_BUXMI RecName: Full=50S
ribosomal protein L20, chloroplastic
gi|146762308|gb|ABQ45272.1| ribosomal protein L20 [Buxus
microphylla]
Length = 117
Score = 97.1 bits (240), Expect = 2e-18
Identities = 47/56 (83%), Positives = 52/56 (92%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRG+HSRLTRTT QQK+RALVSAHRDR +QK +FRRLWI RINAVIRDN+V
Sbjct: 19 LFASTFRGSHSRLTRTTTQQKIRALVSAHRDRGKQKRYFRRLWITRINAVIRDNRV 74
>gb|AHH24297.1| ribosomal protein L20 (chloroplast) [Japonolirion osense]
Length = 117
Score = 95.9 bits (237), Expect = 5e-18
Identities = 48/56 (85%), Positives = 49/56 (87%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRTT QQKMRALVS HRDR RQK FRRLWI RINAV R+NKV
Sbjct: 19 LFASTFRGAHSRLTRTTTQQKMRALVSTHRDRGRQKRDFRRLWITRINAVTRENKV 74
>gb|AFQ39434.1| ribosomal protein L20, partial [Fragaria viridis]
Length = 106
Score = 95.9 bits (237), Expect = 5e-18
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIR+NKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRSRQKRDFRRLWITRINAVIRENKV 74
>ref|YP_008081480.1| ribosomal protein L20 (chloroplast) [Trochodendron aralioides]
gi|290487866|gb|ADD30317.1| ribosomal protein L20
[Trochodendron aralioides] gi|479279319|gb|AGJ72172.1|
ribosomal protein L20 (chloroplast) [Trochodendron
aralioides]
Length = 117
Score = 95.9 bits (237), Expect = 5e-18
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKVS 1
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIR+N+VS
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRENRVS 75
>gb|ADD30312.1| ribosomal protein L20 [Liquidambar styraciflua]
Length = 117
Score = 95.9 bits (237), Expect = 5e-18
Identities = 48/57 (84%), Positives = 51/57 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKVS 1
LFAS+FRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIRDN+VS
Sbjct: 19 LFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRQKRDFRRLWITRINAVIRDNRVS 75
>ref|YP_002836113.1| ribosomal protein L20 [Megaleranthis saniculifolia]
gi|226933905|gb|ACO92038.1| ribosomal protein L20
[Megaleranthis saniculifolia]
Length = 117
Score = 95.9 bits (237), Expect = 5e-18
Identities = 48/57 (84%), Positives = 52/57 (91%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKVS 1
LFASTFRGAHSRLTR+TIQQKMRALVSAHRDR RQK +FRRLWI RINA IR++ VS
Sbjct: 19 LFASTFRGAHSRLTRSTIQQKMRALVSAHRDRGRQKRNFRRLWITRINAAIRESGVS 75
>ref|YP_008965515.1| ribosomal protein L20 [Pyrus spinosa] gi|565666487|emb|CDI73587.1|
ribosomal protein L20 [Pyrus spinosa]
Length = 117
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIR+NKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRENKV 74
>ref|YP_008082756.1| ribosomal protein L20 [Prinsepia utilis]
gi|501418846|gb|AGL94723.1| ribosomal protein L20
[Prinsepia utilis]
Length = 117
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/56 (85%), Positives = 49/56 (87%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LF STFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIRDNKV
Sbjct: 19 LFTSTFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRDNKV 74
>gb|AFQ39444.1| ribosomal protein L20, partial [Potentilla villosa]
Length = 106
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFAS+FRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIRDNKV
Sbjct: 19 LFASSFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRDNKV 74
>ref|YP_005296123.1| rpl20 gene product (chloroplast) [Pentactina rupicola]
gi|371532646|gb|AEX31756.1| ribosomal protein L20
(chloroplast) [Pentactina rupicola]
Length = 117
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIR+NKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRENKV 74
>ref|YP_004842261.1| ribosomal protein L20 [Pyrus pyrifolia]
gi|345433583|dbj|BAK69405.1| ribosomal protein L20
[Pyrus pyrifolia]
Length = 117
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIR+NKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRENKV 74
>ref|YP_004021688.1| ribosomal protein L20 [Prunus persica]
gi|595789790|ref|YP_009020061.1| ribosomal protein L20
[Prunus mume] gi|309321457|gb|ADO64998.1| ribosomal
protein L20 [Prunus persica] gi|589061076|gb|AHK26897.1|
ribosomal protein L20 [Prunus mume]
gi|597569129|gb|AHN13560.1| ribosomal protein L20
(chloroplast) [Prunus kansuensis]
Length = 117
Score = 95.5 bits (236), Expect = 7e-18
Identities = 48/56 (85%), Positives = 50/56 (89%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKV 4
LFASTFRGAHSRLTRT QQK+RALVSAHRDR RQK FRRLWI RINAVIR+NKV
Sbjct: 19 LFASTFRGAHSRLTRTITQQKIRALVSAHRDRGRQKRDFRRLWITRINAVIRENKV 74
>ref|YP_002720135.1| rpl20 [Jatropha curcas] gi|224979587|gb|ACN72714.1| rpl20 [Jatropha
curcas]
Length = 117
Score = 95.5 bits (236), Expect = 7e-18
Identities = 46/57 (80%), Positives = 52/57 (91%)
Frame = -3
Query: 171 LFASTFRGAHSRLTRTTIQQKMRALVSAHRDRRRQKIHFRRLWIARINAVIRDNKVS 1
LFAS+FRGAHSRLTRT IQQK+RAL+SAHRDR RQK +FRRLW+ RINA IR+NKVS
Sbjct: 19 LFASSFRGAHSRLTRTIIQQKIRALISAHRDRDRQKGNFRRLWVTRINAAIRENKVS 75