BLASTX nr result
ID: Cocculus23_contig00050016
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00050016
(378 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEA48975.1| ribulose-1,5-bisphosphate carboxylase/oxygenase s... 90 4e-16
dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ... 90 4e-16
dbj|BAI53118.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ... 89 5e-16
sp|Q9XGX4.1|RBS3_AMAHP RecName: Full=Ribulose bisphosphate carbo... 89 6e-16
dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ... 89 6e-16
ref|XP_007151771.1| hypothetical protein PHAVU_004G073400g, part... 89 8e-16
ref|XP_007151650.1| hypothetical protein PHAVU_004G064800g [Phas... 89 8e-16
gb|AGV54682.1| ribulose bisphosphate carboxylase [Phaseolus vulg... 89 8e-16
emb|CAA42617.1| ribulose bisphosphate carboxylase [Phaseolus vul... 89 8e-16
emb|CAA42618.1| ribulose bisphosphate carboxylase [Phaseolus vul... 89 8e-16
emb|CAA59218.1| ribulose-bisphosphate carboxylase [synthetic con... 88 1e-15
gb|AAD27881.1|AF139469_1 ribulose-1,5-bisphosphate carboxylase s... 88 1e-15
ref|NP_001066607.1| Os12g0292400 [Oryza sativa Japonica Group] g... 88 1e-15
ref|NP_001066606.1| Os12g0291400 [Oryza sativa Japonica Group] g... 88 1e-15
ref|NP_001066604.1| Os12g0291100 [Oryza sativa Japonica Group] g... 88 1e-15
gb|AAA84592.1| ribulose 1,5-bisphosphate carboxylase [Oryza sativa] 88 1e-15
pdb|1WDD|S Chain S, Crystal Structure Of Activated Rice Rubisco ... 88 1e-15
ref|NP_001066559.1| Os12g0274700 [Oryza sativa Japonica Group] g... 88 1e-15
pdb|3AXM|S Chain S, Structure Of Rice Rubisco In Complex With 6p... 88 1e-15
dbj|BAK23962.1| ribulose-1,5-bisphosphate carboxylase/oxygenase ... 88 1e-15
>gb|AEA48975.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Rosa
roxburghii]
Length = 179
Score = 89.7 bits (221), Expect = 4e-16
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKELEE HP+ F+RIIGF+ RQVQ +SFIA++PPGY
Sbjct: 125 MWKLPMFGCTDSAQVLKELEEAKKAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 179
>dbj|BAI53119.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eucalyptus globulus]
Length = 181
Score = 89.7 bits (221), Expect = 4e-16
Identities = 39/55 (70%), Positives = 47/55 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTDP+QV KEL+E +P AFVRIIGF+ KRQVQ +SFIA++PPG+
Sbjct: 127 MWKLPMFGCTDPLQVFKELDEAIKTYPNAFVRIIGFDNKRQVQCISFIAYKPPGF 181
>dbj|BAI53118.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eucalyptus globulus]
Length = 181
Score = 89.4 bits (220), Expect = 5e-16
Identities = 41/55 (74%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKELEE +P AFVRIIGF+ KRQVQ +SFIA +PPGY
Sbjct: 127 MWKLPMFGCTDSAQVLKELEECKKAYPTAFVRIIGFDNKRQVQCISFIAFKPPGY 181
>sp|Q9XGX4.1|RBS3_AMAHP RecName: Full=Ribulose bisphosphate carboxylase small chain 3,
chloroplastic; Short=RuBisCO small subunit 3; Flags:
Precursor gi|5002365|gb|AAD37440.1|AF150667_1 ribulose
1,5 bisphosphate carboxylase small subunit precursor
[Amaranthus hypochondriacus]
Length = 180
Score = 89.0 bits (219), Expect = 6e-16
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPM+GCTDP QVL E+EE +P AF+RIIGF+ KRQVQ VSFIA +PPGY
Sbjct: 126 MWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAFKPPGY 180
>dbj|BAI53120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[Eucalyptus globulus]
Length = 179
Score = 89.0 bits (219), Expect = 6e-16
Identities = 39/55 (70%), Positives = 46/55 (83%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKELEE +P AF+RIIGF+ KRQVQ +SFIA++PPG+
Sbjct: 125 MWKLPMFGCTDSAQVLKELEEAKKAYPTAFIRIIGFDNKRQVQCISFIAYKPPGF 179
>ref|XP_007151771.1| hypothetical protein PHAVU_004G073400g, partial [Phaseolus
vulgaris] gi|561025080|gb|ESW23765.1| hypothetical
protein PHAVU_004G073400g, partial [Phaseolus vulgaris]
Length = 121
Score = 88.6 bits (218), Expect = 8e-16
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKEL E T HP+ F+RIIGF+ RQVQ +SFIA++PPGY
Sbjct: 67 MWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 121
>ref|XP_007151650.1| hypothetical protein PHAVU_004G064800g [Phaseolus vulgaris]
gi|593702483|ref|XP_007151651.1| hypothetical protein
PHAVU_004G064900g [Phaseolus vulgaris]
gi|561024959|gb|ESW23644.1| hypothetical protein
PHAVU_004G064800g [Phaseolus vulgaris]
gi|561024960|gb|ESW23645.1| hypothetical protein
PHAVU_004G064900g [Phaseolus vulgaris]
Length = 180
Score = 88.6 bits (218), Expect = 8e-16
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKEL E T HP+ F+RIIGF+ RQVQ +SFIA++PPGY
Sbjct: 126 MWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 180
>gb|AGV54682.1| ribulose bisphosphate carboxylase [Phaseolus vulgaris]
Length = 180
Score = 88.6 bits (218), Expect = 8e-16
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKEL E T HP+ F+RIIGF+ RQVQ +SFIA++PPGY
Sbjct: 126 MWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 180
>emb|CAA42617.1| ribulose bisphosphate carboxylase [Phaseolus vulgaris]
Length = 135
Score = 88.6 bits (218), Expect = 8e-16
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKEL E T HP+ F+RIIGF+ RQVQ +SFIA++PPGY
Sbjct: 81 MWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 135
>emb|CAA42618.1| ribulose bisphosphate carboxylase [Phaseolus vulgaris]
gi|21053|emb|CAA40339.1| small subunit of ribulose
1,5-bisphosphate carboxylase/oxygenase [Phaseolus
vulgaris]
Length = 180
Score = 88.6 bits (218), Expect = 8e-16
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPMFGCTD QVLKEL E T HP+ F+RIIGF+ RQVQ +SFIA++PPGY
Sbjct: 126 MWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 180
>emb|CAA59218.1| ribulose-bisphosphate carboxylase [synthetic construct]
gi|77554374|gb|ABA97170.1| Ribulose bisphosphate
carboxylase small chain A, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
Length = 128
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 68 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 121
>gb|AAD27881.1|AF139469_1 ribulose-1,5-bisphosphate carboxylase small subunit [Vigna radiata]
Length = 181
Score = 87.8 bits (216), Expect = 1e-15
Identities = 38/55 (69%), Positives = 46/55 (83%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPGY 212
MWKLPM+GCTD QVLKEL E TL+P+ FVRI+GF+ RQVQ +SFIA++PPGY
Sbjct: 127 MWKLPMYGCTDSSQVLKELREARTLYPDGFVRIVGFDSVRQVQCISFIAYKPPGY 181
>ref|NP_001066607.1| Os12g0292400 [Oryza sativa Japonica Group]
gi|77554383|gb|ABA97179.1| Ribulose bisphosphate
carboxylase small chain C, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|77554384|gb|ABA97180.1| Ribulose bisphosphate
carboxylase small chain C, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|113649114|dbj|BAF29626.1| Os12g0292400 [Oryza sativa
Japonica Group] gi|125579070|gb|EAZ20216.1| hypothetical
protein OsJ_35820 [Oryza sativa Japonica Group]
gi|149390921|gb|ABR25478.1| ribulose bisphosphate
carboxylase small chain c [Oryza sativa Indica Group]
gi|215687018|dbj|BAG90832.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215687290|dbj|BAG91855.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 175
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 115 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
>ref|NP_001066606.1| Os12g0291400 [Oryza sativa Japonica Group]
gi|77554377|gb|ABA97173.1| Ribulose bisphosphate
carboxylase small chain A, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|108862507|gb|ABG21973.1| Ribulose bisphosphate
carboxylase small chain A, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|113649113|dbj|BAF29625.1| Os12g0291400 [Oryza sativa
Japonica Group] gi|125579068|gb|EAZ20214.1| hypothetical
protein OsJ_35814 [Oryza sativa Japonica Group]
gi|215704569|dbj|BAG94202.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 175
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 115 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
>ref|NP_001066604.1| Os12g0291100 [Oryza sativa Japonica Group]
gi|109940134|sp|P18566.2|RBS2_ORYSJ RecName:
Full=Ribulose bisphosphate carboxylase small chain A,
chloroplastic; Short=RuBisCO small subunit A; Flags:
Precursor gi|38374128|gb|AAR19268.1|
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit [Oryza sativa Japonica Group]
gi|77554373|gb|ABA97169.1| Ribulose bisphosphate
carboxylase small chain A, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|108862508|gb|ABG21974.1| Ribulose bisphosphate
carboxylase small chain A, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|108862509|gb|ABG21975.1| Ribulose bisphosphate
carboxylase small chain A, chloroplast precursor,
putative, expressed [Oryza sativa Japonica Group]
gi|113649111|dbj|BAF29623.1| Os12g0291100 [Oryza sativa
Japonica Group] gi|149391337|gb|ABR25686.1| ribulose
bisphosphate carboxylase small chain c [Oryza sativa
Indica Group] gi|218186697|gb|EEC69124.1| hypothetical
protein OsI_38042 [Oryza sativa Indica Group]
gi|222616937|gb|EEE53069.1| hypothetical protein
OsJ_35811 [Oryza sativa Japonica Group]
gi|347737186|gb|AEP20544.1| ribulose-1,5-bisphosphate
carboxylase/oxygenase small subunit [Oryza sativa
Japonica Group]
Length = 175
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 115 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
>gb|AAA84592.1| ribulose 1,5-bisphosphate carboxylase [Oryza sativa]
Length = 169
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 109 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 162
>pdb|1WDD|S Chain S, Crystal Structure Of Activated Rice Rubisco Complexed With
2- Carboxyarabinitol-1,5-bisphosphate
gi|56966765|pdb|1WDD|W Chain W, Crystal Structure Of
Activated Rice Rubisco Complexed With 2-
Carboxyarabinitol-1,5-bisphosphate
Length = 128
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 68 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 121
>ref|NP_001066559.1| Os12g0274700 [Oryza sativa Japonica Group]
gi|122234140|sp|Q0INY7.1|RBS1_ORYSJ RecName:
Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=Ribulose bisphosphate carboxylase
small chain C; Short=RuBisCO small subunit;
Short=RuBisCO small subunit C; Flags: Precursor
gi|158513174|sp|A2Y205.2|RBS1_ORYSI RecName:
Full=Ribulose bisphosphate carboxylase small chain,
chloroplastic; Short=Ribulose bisphosphate carboxylase
small chain C; Short=RuBisCO small subunit;
Short=RuBisCO small subunit C; Flags: Precursor
gi|218208|dbj|BAA00538.1| small subunit of
ribulose-1,5-bisphosphate carboxylase [Oryza sativa
Japonica Group] gi|2407283|gb|AAB70544.1| ribulose
1,5-bisphosphate carboxylase small subunit [Oryza sativa
Indica Group] gi|77554260|gb|ABA97056.1| Ribulose
bisphosphate carboxylase small chain C, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group] gi|113649066|dbj|BAF29578.1| Os12g0274700 [Oryza
sativa Japonica Group] gi|149392066|gb|ABR25908.1|
chloroplast ribulose bisphosphate carboxylase small
chain precursor [Oryza sativa Indica Group]
gi|215692618|dbj|BAG88038.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215767359|dbj|BAG99587.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|215768262|dbj|BAH00491.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|222630752|gb|EEE62884.1| hypothetical protein
OsJ_17688 [Oryza sativa Japonica Group]
gi|226375|prf||1508256A ribulose bisphosphate
carboxylase S
Length = 175
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 115 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
>pdb|3AXM|S Chain S, Structure Of Rice Rubisco In Complex With 6pg
gi|383875293|pdb|3AXM|T Chain T, Structure Of Rice
Rubisco In Complex With 6pg gi|383875295|pdb|3AXM|U
Chain U, Structure Of Rice Rubisco In Complex With 6pg
gi|383875297|pdb|3AXM|V Chain V, Structure Of Rice
Rubisco In Complex With 6pg gi|383875299|pdb|3AXM|W
Chain W, Structure Of Rice Rubisco In Complex With 6pg
gi|383875301|pdb|3AXM|X Chain X, Structure Of Rice
Rubisco In Complex With 6pg gi|383875303|pdb|3AXM|Y
Chain Y, Structure Of Rice Rubisco In Complex With 6pg
gi|383875305|pdb|3AXM|Z Chain Z, Structure Of Rice
Rubisco In Complex With 6pg
Length = 129
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 69 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 122
>dbj|BAK23962.1| ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
[synthetic construct]
Length = 175
Score = 87.8 bits (216), Expect = 1e-15
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = -3
Query: 376 MWKLPMFGCTDPVQVLKELEEVSTLHPEAFVRIIGFNPKRQVQIVSFIAHRPPG 215
MWKLPMFGCTD QVLKELEE +P+AFVRIIGF+ RQVQ++SFIA++PPG
Sbjct: 115 MWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168