BLASTX nr result
ID: Cocculus23_contig00049902
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00049902
(294 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006481538.1| PREDICTED: pentatricopeptide repeat-containi... 153 3e-35
ref|XP_004487456.1| PREDICTED: pentatricopeptide repeat-containi... 153 3e-35
ref|XP_006424118.1| hypothetical protein CICLE_v10028449mg [Citr... 150 2e-34
ref|XP_002523876.1| pentatricopeptide repeat-containing protein,... 150 2e-34
ref|XP_004293118.1| PREDICTED: pentatricopeptide repeat-containi... 149 5e-34
ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containi... 147 1e-33
ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi... 146 3e-33
ref|XP_007015694.1| Tetratricopeptide repeat (TPR)-like superfam... 145 4e-33
ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containi... 145 8e-33
ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 144 1e-32
ref|XP_007150033.1| hypothetical protein PHAVU_005G120400g [Phas... 142 5e-32
gb|EXC37761.1| hypothetical protein L484_001219 [Morus notabilis] 142 6e-32
ref|XP_006340426.1| PREDICTED: pentatricopeptide repeat-containi... 141 8e-32
ref|XP_004251424.1| PREDICTED: pentatricopeptide repeat-containi... 141 1e-31
ref|XP_003596872.1| Pentatricopeptide repeat-containing protein ... 139 4e-31
emb|CBI24422.3| unnamed protein product [Vitis vinifera] 139 4e-31
ref|XP_006417992.1| hypothetical protein EUTSA_v10009524mg [Eutr... 139 5e-31
gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium of... 138 9e-31
ref|XP_002299777.1| pentatricopeptide repeat-containing family p... 138 9e-31
gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oler... 137 1e-30
>ref|XP_006481538.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Citrus sinensis]
Length = 509
Score = 153 bits (386), Expect = 3e-35
Identities = 66/97 (68%), Positives = 85/97 (87%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I+VL ACAN+GTLG+G+W+HRYV ++DF +N++VCN+LID+YSRCGCI+FA QVF M+K
Sbjct: 219 ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG+ EALE+F MQ EGF+PD
Sbjct: 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD 315
Score = 61.6 bits (148), Expect = 1e-07
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +1
Query: 109 NSLIDMYSRCGCIKFACQVFNNMNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFE 288
N++ID Y R G I+ A ++F+ M R+ +SW +++ GF GY EEALE F MQ+ G E
Sbjct: 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE 212
Query: 289 PD 294
PD
Sbjct: 213 PD 214
>ref|XP_004487456.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cicer arietinum]
Length = 512
Score = 153 bits (386), Expect = 3e-35
Identities = 68/97 (70%), Positives = 85/97 (87%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I V++ACANLG LGLG+WVHR+V +K+F +N++V NSLIDMY+RCGCI FA QVF+ M++
Sbjct: 222 IAVISACANLGALGLGLWVHRFVMKKEFRDNVKVSNSLIDMYARCGCIGFARQVFDGMSQ 281
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
RNLVSWNSIIIGFA+NG+A+EAL FY M+ EGFEPD
Sbjct: 282 RNLVSWNSIIIGFAVNGHADEALSFFYSMKKEGFEPD 318
Score = 70.9 bits (172), Expect = 2e-10
Identities = 41/96 (42%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Frame = +1
Query: 4 ITVLAACAN---LGTLGLGIWVHRYVQQKDFSEN-IRVCNSLIDMYSRCGCIKFACQVFN 171
IT+L+ACA+ + T+ G +H Y + F+ N I+V +LIDMY++CG A VF+
Sbjct: 86 ITLLSACAHQPSITTITFGATLHAYAFKHGFAVNDIKVGTALIDMYAKCGRAGSARLVFD 145
Query: 172 NMNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVE 279
M RNLVSWN++I G+ NG E+AL+ F M ++
Sbjct: 146 QMGVRNLVSWNTMIGGYMKNGEIEDALKLFDEMPMK 181
>ref|XP_006424118.1| hypothetical protein CICLE_v10028449mg [Citrus clementina]
gi|557526052|gb|ESR37358.1| hypothetical protein
CICLE_v10028449mg [Citrus clementina]
Length = 445
Score = 150 bits (379), Expect = 2e-34
Identities = 65/97 (67%), Positives = 84/97 (86%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I+VL ACAN+G LG+G+W+HR+V ++DF +N+RVCN+LID+YSRCGCI+FA QVF M+K
Sbjct: 149 ISVLNACANVGMLGIGLWIHRFVLKQDFKDNVRVCNTLIDLYSRCGCIEFARQVFQRMHK 208
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG+ EALE+F MQ EGF+PD
Sbjct: 209 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD 245
Score = 65.1 bits (157), Expect = 1e-08
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = +1
Query: 109 NSLIDMYSRCGCIKFACQVFNNMNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFE 288
N++ID Y R G I+ A ++F+ M RN +SW +++ GFA GY EEALE F MQ+ G E
Sbjct: 83 NAMIDGYMRNGDIESAVKMFDEMPVRNAISWTALLNGFAKRGYFEEALECFREMQISGVE 142
Query: 289 PD 294
PD
Sbjct: 143 PD 144
>ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536964|gb|EEF38602.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 384
Score = 150 bits (378), Expect = 2e-34
Identities = 69/97 (71%), Positives = 82/97 (84%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I VL+ACANLG LGLG+W+HRYV +K+F N+R+ NSLIDMYSRCGCI+ A QVF+ M K
Sbjct: 233 IAVLSACANLGALGLGLWIHRYVLEKEFRNNVRIGNSLIDMYSRCGCIELARQVFHKMLK 292
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA NG+AEEALE+F MQ EGF+PD
Sbjct: 293 RTLVSWNSIIVGFAANGFAEEALEYFGLMQKEGFKPD 329
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/91 (34%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
Frame = +1
Query: 7 TVLAACANLGTLG--LGIWVHRYVQQKDFSE-NIRVCNSLIDMYSRCGCIKFACQVFNNM 177
T+++ CA+ G +G +H YV++ N+ V +L+DMY++CG ++ A +F+++
Sbjct: 99 TLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNVMVGTALVDMYAKCGKVQLARLIFDDL 158
Query: 178 NKRNLVSWNSIIIGFAINGYAEEALEHFYRM 270
+N VSWN++I G+ NG A+E F M
Sbjct: 159 KVKNSVSWNTMIDGYMRNGETGSAMELFDEM 189
>ref|XP_004293118.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Fragaria vesca subsp. vesca]
Length = 504
Score = 149 bits (375), Expect = 5e-34
Identities = 68/97 (70%), Positives = 83/97 (85%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I V+AACA+LGTLGLG+WV+R+V ++ F NIR+ NSLIDMYSRCGCI FA QVF NM
Sbjct: 219 IAVIAACADLGTLGLGLWVNRFVTKQHFRHNIRISNSLIDMYSRCGCIDFARQVFGNMPN 278
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNS+I+GFA+NG+AEEALE F++MQ EGF+PD
Sbjct: 279 RTLVSWNSMIVGFAVNGHAEEALEFFHQMQKEGFKPD 315
Score = 59.7 bits (143), Expect = 4e-07
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = +1
Query: 109 NSLIDMYSRCGCIKFACQVFNNMNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFE 288
N+LID Y + G ++ A +VF+ M KR+ VSW ++I GF E+ALE F MQV G E
Sbjct: 153 NTLIDGYMKMGNVRDAVEVFDEMPKRDAVSWTTLIGGFVKKRRYEDALEWFREMQVSGVE 212
Query: 289 PD 294
PD
Sbjct: 213 PD 214
>ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 147 bits (372), Expect = 1e-33
Identities = 67/97 (69%), Positives = 82/97 (84%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I VLAACA+LG L LG+WVHR+V ++F +NI++ NSLIDMYSRCGCI+FA QVF M K
Sbjct: 231 IAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAK 290
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG+A+E+LE FY MQ EGF+PD
Sbjct: 291 RTLVSWNSIIVGFAVNGFADESLEFFYAMQKEGFKPD 327
>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 146 bits (369), Expect = 3e-33
Identities = 66/97 (68%), Positives = 83/97 (85%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I+VLAACANLG LGLG+W++R+V ++DF +NI++ NSLIDMYSRCGCI+ A QVF M K
Sbjct: 228 ISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPK 287
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R+LVSWNS+I+GFA+NG+AEEALE F M+ EGF PD
Sbjct: 288 RSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPD 324
Score = 66.2 bits (160), Expect = 4e-09
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 34/131 (25%)
Frame = +1
Query: 4 ITVLAACANLGTLGL--GIWVHRYVQQKDF-SENIRVCNSLIDMYSRCGCIKFACQVFNN 174
+T+L+AC + GL G +H YV++ +EN+ V +L+DMYS+CG + A +F+
Sbjct: 93 LTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDE 152
Query: 175 MNKRNLVSWN-------------------------------SIIIGFAINGYAEEALEHF 261
M+ RN VSWN S+I GF G E+ALE F
Sbjct: 153 MHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWF 212
Query: 262 YRMQVEGFEPD 294
MQ+ G EPD
Sbjct: 213 REMQLAGVEPD 223
>ref|XP_007015694.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao] gi|508786057|gb|EOY33313.1| Tetratricopeptide
repeat (TPR)-like superfamily protein [Theobroma cacao]
Length = 509
Score = 145 bits (367), Expect = 4e-33
Identities = 65/97 (67%), Positives = 82/97 (84%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I VL ACANLG LG+G+W+HR+V ++ F +N+RV NSLIDMYSRCGCI+ A +VF+ M K
Sbjct: 219 IAVLTACANLGALGVGLWIHRFVLKQSFRDNVRVNNSLIDMYSRCGCIELAREVFDKMQK 278
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG+AEEAL++F MQ EGF+PD
Sbjct: 279 RTLVSWNSIIVGFAVNGFAEEALKYFDSMQKEGFKPD 315
Score = 68.6 bits (166), Expect = 9e-10
Identities = 37/92 (40%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Frame = +1
Query: 4 ITVLAACAN--LGTLGLGIWVHRYVQQKDFS-ENIRVCNSLIDMYSRCGCIKFACQVFNN 174
+T+L+ CA+ L + LG+ +H YV + EN+ V +L++MY++CG +K A VF+
Sbjct: 84 VTLLSGCADFPLKSGVLGVLIHGYVCKLGLDKENVMVGTALVEMYAKCGHVKVAKLVFDV 143
Query: 175 MNKRNLVSWNSIIIGFAINGYAEEALEHFYRM 270
M +NLVSWN+++ G+ NG E+A+E F M
Sbjct: 144 MRVKNLVSWNTMVDGYMRNGEYEKAVEIFDEM 175
>ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 145 bits (365), Expect = 8e-33
Identities = 67/97 (69%), Positives = 79/97 (81%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I V+AACANLGTLGLG+WVHR V +DF N++V NSLIDMYSRCGCI A QVF+ M +
Sbjct: 231 IAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQ 290
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG A+EAL +F MQ EGF+PD
Sbjct: 291 RTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPD 327
Score = 67.0 bits (162), Expect = 3e-09
Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Frame = +1
Query: 4 ITVLAACANL---GTLGLGIWVHRYVQQKDFSEN-IRVCNSLIDMYSRCGCIKFACQVFN 171
IT+L+ACA+ ++ G +H +V++ N + V +LIDMY++CG ++ A F+
Sbjct: 95 ITLLSACAHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFD 154
Query: 172 NMNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVE 279
M RNLVSWN++I G+ NG E+AL+ F + V+
Sbjct: 155 QMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVK 190
>ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 144 bits (364), Expect = 1e-32
Identities = 66/97 (68%), Positives = 81/97 (83%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I VLAACA+LG L LG+WVHR+V ++F +NI++ NSLIDMYSRCGCI+FA QVF M K
Sbjct: 231 IAVLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAK 290
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG+A+E+LE F MQ EGF+PD
Sbjct: 291 RTLVSWNSIIVGFAVNGFADESLEFFXAMQKEGFKPD 327
>ref|XP_007150033.1| hypothetical protein PHAVU_005G120400g [Phaseolus vulgaris]
gi|561023297|gb|ESW22027.1| hypothetical protein
PHAVU_005G120400g [Phaseolus vulgaris]
Length = 514
Score = 142 bits (358), Expect = 5e-32
Identities = 66/97 (68%), Positives = 78/97 (80%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I V+AACANLGTLGLG+WVHR V + F N+RV NSLIDMYSRCGCI+ A QVF+ M
Sbjct: 224 IAVVAACANLGTLGLGLWVHRLVMTQAFRNNVRVSNSLIDMYSRCGCIELARQVFDRMPN 283
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG+A+EAL +F MQ GF+PD
Sbjct: 284 RTLVSWNSIIVGFAVNGFADEALNYFNSMQEAGFKPD 320
Score = 70.5 bits (171), Expect = 2e-10
Identities = 39/96 (40%), Positives = 59/96 (61%), Gaps = 4/96 (4%)
Frame = +1
Query: 4 ITVLAACAN---LGTLGLGIWVHRYVQQKDFSEN-IRVCNSLIDMYSRCGCIKFACQVFN 171
IT+L+ CA+ ++ G VH Y + N + V +LIDMY++CG + FA FN
Sbjct: 88 ITLLSVCAHHPSQSSISFGTIVHGYACKMGLHVNDVMVGTALIDMYAKCGRVDFARLAFN 147
Query: 172 NMNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVE 279
+M RNLVSWN++I G+ NG E+AL+ F ++ V+
Sbjct: 148 HMRVRNLVSWNTMIDGYMRNGRIEDALQVFDQLPVK 183
>gb|EXC37761.1| hypothetical protein L484_001219 [Morus notabilis]
Length = 508
Score = 142 bits (357), Expect = 6e-32
Identities = 63/97 (64%), Positives = 81/97 (83%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I VLAACA+LGT+GLG+W++R++ + F +N+++ NSLIDMYSRCGCI+FA QVF M
Sbjct: 221 IAVLAACADLGTVGLGLWMNRFIMNRKFKDNVKISNSLIDMYSRCGCIEFARQVFERMPN 280
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII+GFA+NG+AEEAL+ F MQ EGF+PD
Sbjct: 281 RTLVSWNSIIVGFAVNGHAEEALKFFNLMQREGFKPD 317
Score = 58.5 bits (140), Expect = 9e-07
Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDF-SENIRVCNSLIDMYSRCGCIKFACQVFNNMN 180
+T+L+ CA+ + G +H Y ++ F + N+ V +L+ MY++ G + A VF+++
Sbjct: 89 VTLLSGCAD-SNISFGASIHGYARKLCFDTSNVMVGTALVAMYAKRGLVDVARLVFDDIK 147
Query: 181 KRNLVSWNSIIIGFAINGYAEEALEHFYRM 270
++N VSWN++I G+ NG +A+E F M
Sbjct: 148 EKNSVSWNTMIDGYMRNGKVRDAVEVFDEM 177
>ref|XP_006340426.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Solanum tuberosum]
Length = 509
Score = 141 bits (356), Expect = 8e-32
Identities = 61/97 (62%), Positives = 83/97 (85%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I+VL+ACANLGTLG+ +W+HR++ +++F +N+RV NSLIDMY RCGCI+ ACQVF+ M +
Sbjct: 220 ISVLSACANLGTLGISLWLHRFILRREFKDNVRVNNSLIDMYCRCGCIELACQVFDRMTE 279
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R+LVSWNSII+G A+NG+A +AL++F MQ EGF PD
Sbjct: 280 RSLVSWNSIIVGLAVNGHAVDALQYFELMQNEGFLPD 316
Score = 57.0 bits (136), Expect = 3e-06
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 34/131 (25%)
Frame = +1
Query: 4 ITVLAACANLGT--LGLGIWVHRYVQQKDF-SENIRVCNSLIDMYSRCGCI--------- 147
+T+L+ CA+ L LG +H Y ++ ++N++V ++IDMYS+ G +
Sbjct: 85 VTLLSGCAHFPAQALSLGSALHGYARKLGLDTQNVKVGTAVIDMYSKFGLVGLARLSFDH 144
Query: 148 ----------------------KFACQVFNNMNKRNLVSWNSIIIGFAINGYAEEALEHF 261
K A +VF+ + +R+++SW +++ GF NG EE L F
Sbjct: 145 MGVKNKVTWNTMVDGYMRNGDFKNAVKVFDEITERDVISWTALVGGFVKNGLFEEGLVWF 204
Query: 262 YRMQVEGFEPD 294
MQ+ EPD
Sbjct: 205 REMQLSEVEPD 215
>ref|XP_004251424.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Solanum lycopersicum]
Length = 507
Score = 141 bits (355), Expect = 1e-31
Identities = 60/97 (61%), Positives = 83/97 (85%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I+VL+ACANLGTLG+ +W+HR++ +++F +N+RV NSLIDMY RCGC++ ACQVF+ M
Sbjct: 218 ISVLSACANLGTLGISLWLHRFILRREFKDNVRVNNSLIDMYCRCGCVELACQVFHRMTG 277
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R+LVSWNSII+G A+NG+A +AL++F MQ EGF+PD
Sbjct: 278 RSLVSWNSIIVGLAVNGHAIDALQYFDLMQNEGFQPD 314
Score = 57.0 bits (136), Expect = 3e-06
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 34/131 (25%)
Frame = +1
Query: 4 ITVLAACANLG--TLGLGIWVHRYVQQKDF-SENIRVCNSLIDMYSRCGCI--------- 147
+T+L+ CA+ L G +H Y ++ ++N++V ++IDMYS+ G +
Sbjct: 83 VTLLSCCAHFPDQALSFGSALHGYARKLGLDTQNVKVGTAVIDMYSKFGLVGLARLSFDH 142
Query: 148 ----------------------KFACQVFNNMNKRNLVSWNSIIIGFAINGYAEEALEHF 261
K A +VF+ + R+++SW +++ GF NG EE L F
Sbjct: 143 MGAKNKVTWNTMVDGYMRNGDFKNAVKVFDEIPDRDVISWTALVGGFVKNGLFEEGLVWF 202
Query: 262 YRMQVEGFEPD 294
MQ+ G EPD
Sbjct: 203 REMQLSGVEPD 213
>ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 517
Score = 139 bits (350), Expect = 4e-31
Identities = 61/97 (62%), Positives = 81/97 (83%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I +++ACANLG LGLG+WVHR V +K+F +N++V NSLIDMY+RCGCI+ A QVF+ M++
Sbjct: 227 IAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQ 286
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
RNLVSWNSII+GFA+NG A++AL F M+ EG EP+
Sbjct: 287 RNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPN 323
Score = 67.4 bits (163), Expect = 2e-09
Identities = 37/96 (38%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Frame = +1
Query: 4 ITVLAACANLGT---LGLGIWVHRYVQQKDFSEN-IRVCNSLIDMYSRCGCIKFACQVFN 171
IT+L+ACA+ + + G +H + + F+ N + V +LIDMY++CG + +A VF+
Sbjct: 91 ITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFD 150
Query: 172 NMNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVE 279
M RNLVSWN++I G+ NG ++AL+ F ++ V+
Sbjct: 151 QMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVK 186
>emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 139 bits (350), Expect = 4e-31
Identities = 63/93 (67%), Positives = 80/93 (86%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I+VLAACANLG LGLG+W++R+V ++DF +NI++ NSLIDMYSRCGCI+ A QVF M K
Sbjct: 228 ISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPK 287
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEG 282
R+LVSWNS+I+GFA+NG+AEEALE F M+ EG
Sbjct: 288 RSLVSWNSMIVGFALNGHAEEALEFFNLMRKEG 320
Score = 66.2 bits (160), Expect = 4e-09
Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 34/131 (25%)
Frame = +1
Query: 4 ITVLAACANLGTLGL--GIWVHRYVQQKDF-SENIRVCNSLIDMYSRCGCIKFACQVFNN 174
+T+L+AC + GL G +H YV++ +EN+ V +L+DMYS+CG + A +F+
Sbjct: 93 LTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDE 152
Query: 175 MNKRNLVSWN-------------------------------SIIIGFAINGYAEEALEHF 261
M+ RN VSWN S+I GF G E+ALE F
Sbjct: 153 MHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWF 212
Query: 262 YRMQVEGFEPD 294
MQ+ G EPD
Sbjct: 213 REMQLAGVEPD 223
>ref|XP_006417992.1| hypothetical protein EUTSA_v10009524mg [Eutrema salsugineum]
gi|557095763|gb|ESQ36345.1| hypothetical protein
EUTSA_v10009524mg [Eutrema salsugineum]
Length = 500
Score = 139 bits (349), Expect = 5e-31
Identities = 61/97 (62%), Positives = 75/97 (77%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I LAAC NLG L G+WVHRYV DF N+RV NSLID+Y RCGC++FA QVF+ M K
Sbjct: 216 IAALAACTNLGALSFGLWVHRYVMSHDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEK 275
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R +VSWNS+I+GFA NG A+E+L +F +MQ EGF+PD
Sbjct: 276 RTVVSWNSVIVGFAANGNADESLVYFRKMQEEGFKPD 312
Score = 58.5 bits (140), Expect = 9e-07
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Frame = +1
Query: 31 LGTLGLGIWVHRYVQQK-----DFSE--NIRVCNSLIDMYSRCGCIKFACQVFNNMNKRN 189
+GT LG++ R +K D+ E N N++ID Y R G + A ++F+ M R+
Sbjct: 117 VGTAILGMYSKRGRFRKARLVFDYMEDKNSVTWNTMIDGYMRNGQVYDAVKMFDEMPDRD 176
Query: 190 LVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
L+SW +++ GF G+ EEAL F MQ+ G EPD
Sbjct: 177 LISWTAMMNGFVKKGFHEEALAWFREMQISGVEPD 211
>gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 138 bits (347), Expect = 9e-31
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I LAAC NLG L G+W+HRYV +DF N+RV NSLID+Y RCGC++FA QVF+ M K
Sbjct: 157 IAALAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEK 216
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R +VSWNS+I+GFA NG A E+L +F +MQ EGF+PD
Sbjct: 217 RTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPD 253
Score = 60.1 bits (144), Expect = 3e-07
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Frame = +1
Query: 31 LGTLGLGIWVHRYVQQK-----DFSE--NIRVCNSLIDMYSRCGCIKFACQVFNNMNKRN 189
+GT LG++ R +K D+ E N N++ID Y R G + A ++F+ M R+
Sbjct: 58 VGTAILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGYMRSGQVNTAVKLFDEMLNRD 117
Query: 190 LVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
L+SW +++ GF G+ EEAL F MQ+ G +PD
Sbjct: 118 LISWTAMVNGFVKKGFHEEALSWFREMQISGVKPD 152
>ref|XP_002299777.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222847035|gb|EEE84582.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 439
Score = 138 bits (347), Expect = 9e-31
Identities = 62/97 (63%), Positives = 77/97 (79%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
+TVL+ACANLG LGLG+WVHRY +K +N+++CNSLID+YSRCG I+ A QVF M +
Sbjct: 149 VTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGE 208
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R LVSWNSII G A NG+ EEALEHF MQ +GF+P+
Sbjct: 209 RTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPN 245
Score = 64.3 bits (155), Expect = 2e-08
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Frame = +1
Query: 4 ITVLAACANLGTLG--LGIWVHRYVQQKDFSE-NIRVCNSLIDMYSRCGCIKFACQVFNN 174
IT+L+ CA+L + G LG +H Y ++ N+ V +L+DMY++CG ++ + F+
Sbjct: 14 ITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCFDE 73
Query: 175 MNKRNLVSWNSIIIGFAINGYAEEALEHFYRMQVEG 282
+ +N SWN++I GF NG EA+E F M G
Sbjct: 74 LKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERG 109
>gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 137 bits (346), Expect = 1e-30
Identities = 61/97 (62%), Positives = 76/97 (78%)
Frame = +1
Query: 4 ITVLAACANLGTLGLGIWVHRYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNK 183
I LAACANLG L G+WVHR+V +DF N+RV NSLID+Y RCGC++FA QVF+ M K
Sbjct: 199 IAALAACANLGALSFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEK 258
Query: 184 RNLVSWNSIIIGFAINGYAEEALEHFYRMQVEGFEPD 294
R +VSWNS+I+GFA NG+A E+L +F RMQ E F+PD
Sbjct: 259 RTVVSWNSVIVGFAANGHAHESLVYFRRMQEERFKPD 295
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +1
Query: 64 RYVQQKDFSENIRVCNSLIDMYSRCGCIKFACQVFNNMNKRNLVSWNSIIIGFAINGYAE 243
R V + +N N++ID Y R G + A +VF+ M +R+L+SW ++I GF G E
Sbjct: 118 RLVFDRVEDKNSVTWNTMIDGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVKKGLHE 177
Query: 244 EALEHFYRMQVEGFEPD 294
EAL F MQV G +PD
Sbjct: 178 EALAWFREMQVSGVKPD 194