BLASTX nr result
ID: Cocculus23_contig00049875
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00049875
(279 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containi... 82 8e-14
ref|XP_002307262.2| hypothetical protein POPTR_0005s18110g [Popu... 80 3e-13
ref|XP_007203053.1| hypothetical protein PRUPE_ppa022952mg [Prun... 80 4e-13
ref|XP_004289220.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
gb|EYU44396.1| hypothetical protein MIMGU_mgv1a021185mg, partial... 77 3e-12
ref|XP_007047244.1| Pentatricopeptide repeat superfamily protein... 75 7e-12
gb|EXB75081.1| hypothetical protein L484_002711 [Morus notabilis] 74 2e-11
ref|XP_006656923.1| PREDICTED: pentatricopeptide repeat-containi... 72 8e-11
ref|XP_006425889.1| hypothetical protein CICLE_v10024774mg [Citr... 71 2e-10
ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [S... 71 2e-10
ref|XP_002446525.1| hypothetical protein SORBIDRAFT_06g017520 [S... 70 3e-10
ref|XP_003581265.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 69 7e-10
ref|XP_002530005.1| pentatricopeptide repeat-containing protein,... 69 9e-10
ref|XP_004987140.1| PREDICTED: pentatricopeptide repeat-containi... 68 1e-09
ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group] g... 68 2e-09
gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indi... 68 2e-09
ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containi... 67 2e-09
gb|EYU25390.1| hypothetical protein MIMGU_mgv1a027153mg [Mimulus... 66 4e-09
ref|XP_002885157.1| pentatricopeptide repeat-containing protein ... 66 6e-09
ref|NP_001189950.1| uncharacterized protein [Arabidopsis thalian... 65 7e-09
>ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial [Vitis vinifera]
Length = 1008
Score = 82.0 bits (201), Expect = 8e-14
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNGH-FXXXXXXXXXTFYCE 96
F M G PDAIS++N++SAC++L+ G +AHA+ R FY +
Sbjct: 446 FCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSD 505
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGCIH 3
C KLS++ KLF + +RN +SWNTLISGC+H
Sbjct: 506 CGKLSSSFKLFQKMPLRNAISWNTLISGCVH 536
>ref|XP_002307262.2| hypothetical protein POPTR_0005s18110g [Populus trichocarpa]
gi|550339216|gb|EEE94258.2| hypothetical protein
POPTR_0005s18110g [Populus trichocarpa]
Length = 928
Score = 80.1 bits (196), Expect = 3e-13
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F +M G SPDA+S+++V+SAC+ L+ G AHA+ +R G FY +
Sbjct: 409 FCEMQLGGFSPDAVSIVSVLSACSYLEAVLFGKCAHAFSIRKGIDSSPNVSNALLAFYSD 468
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGCIH 3
C +L+++ KLF + RN VSWNTLISGC+H
Sbjct: 469 CRQLTSSFKLFHKMHTRNTVSWNTLISGCVH 499
>ref|XP_007203053.1| hypothetical protein PRUPE_ppa022952mg [Prunus persica]
gi|462398584|gb|EMJ04252.1| hypothetical protein
PRUPE_ppa022952mg [Prunus persica]
Length = 912
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F KM +G DA+SV++++ AC++L+ G SAHA+ +R G H FY
Sbjct: 391 FRKMQFSGFDSDAVSVVSILPACSKLEADLLGRSAHAFSIRKGSHSNLNLSNALLAFYSG 450
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGCIH 3
C LS A+ LF + IRN ++WNTLIS C+H
Sbjct: 451 CHHLSYAVTLFHKMPIRNAITWNTLISSCVH 481
>ref|XP_004289220.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 856
Score = 78.2 bits (191), Expect = 1e-12
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F M + + DA+S+I+++SAC++L+ G S HA+ +R G H FY +
Sbjct: 299 FRDMQVSRVDVDAVSIISILSACSKLEADLLGRSVHAFSIRKGIHSNLNLSNALLAFYSD 358
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGCIH 3
C +LS IKLF + +RN ++WNTLIS C+H
Sbjct: 359 CHRLSYPIKLFHKMPLRNAITWNTLISACVH 389
>gb|EYU44396.1| hypothetical protein MIMGU_mgv1a021185mg, partial [Mimulus
guttatus]
Length = 711
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Frame = -2
Query: 251 GISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCECDKLSTA 75
G PD+IS+INV+S+C+ LK T G SAHA+ ++N FYC C +L +
Sbjct: 266 GFKPDSISIINVLSSCSGLKATLLGKSAHAFTIKNDTDSNLNVLNAFLAFYCHCCELVYS 325
Query: 74 IKLFSQKRIRNVVSWNTLISGCIH 3
+++F + +++VVSWNT+ISGC++
Sbjct: 326 LRIFDRMVLKSVVSWNTMISGCVN 349
>ref|XP_007047244.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
cacao] gi|508699505|gb|EOX91401.1| Pentatricopeptide
repeat superfamily protein, putative [Theobroma cacao]
Length = 950
Score = 75.5 bits (184), Expect = 7e-12
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Frame = -2
Query: 278 MGFHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFY 102
+ F +M G SPDA+S+++++SAC+ L G SAHA+ +R FY
Sbjct: 391 VAFQEMHLEGFSPDAVSIVSILSACSNLGGILLGKSAHAFVVRRSFETNINVSNALLGFY 450
Query: 101 CECDKLSTAIKLFSQKRIRNVVSWNTLISGCIH 3
+C LST KLF + +N VSWNTLISG +H
Sbjct: 451 SDCCLLSTCFKLFQKMANKNTVSWNTLISGYVH 483
>gb|EXB75081.1| hypothetical protein L484_002711 [Morus notabilis]
Length = 989
Score = 73.9 bits (180), Expect = 2e-11
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F +M S G D +S++++ISAC++L G S H + LRNG FY
Sbjct: 427 FSEMQSAGFDADEVSIVSIISACSKLDAFWLGKSVHTFTLRNGFESNLNVSNALLAFYAG 486
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGCIH 3
C +L + KLF + IR+ +SWNTLIS C+H
Sbjct: 487 CHQLFSCFKLFHEMPIRSTISWNTLISCCVH 517
>ref|XP_006656923.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Oryza brachyantha]
Length = 823
Score = 72.0 bits (175), Expect = 8e-11
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = -2
Query: 266 KMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCECD 90
KM + G+ PDA+++INVISAC KD + S HAY +R+ T Y C
Sbjct: 267 KMQTEGVDPDALTIINVISACRHTKDLRVAKSIHAYAVRSRFEMNDSVMNALLTMYAACG 326
Query: 89 KLSTAIKLFSQKRIRNVVSWNTLISG 12
+LST+ +LF + ++ ++SWNT+ISG
Sbjct: 327 ELSTSNQLFQKMEVQTLISWNTIISG 352
>ref|XP_006425889.1| hypothetical protein CICLE_v10024774mg [Citrus clementina]
gi|557527879|gb|ESR39129.1| hypothetical protein
CICLE_v10024774mg [Citrus clementina]
Length = 1064
Score = 70.9 bits (172), Expect = 2e-10
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNGHF-XXXXXXXXXTFYCE 96
F +M G++PDA+S+I+V+S C++L D G SAHA+ LR G FY +
Sbjct: 434 FRQMQFAGLNPDAVSIISVLSGCSKLDDVLLGKSAHAFSLRKGIVSNLDVLNALLMFYSD 493
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGCI 6
+ S A LF + R+ VSWNTLIS C+
Sbjct: 494 GGQFSYAFTLFHRMSTRSSVSWNTLISRCV 523
>ref|XP_002468382.1| hypothetical protein SORBIDRAFT_01g044940 [Sorghum bicolor]
gi|241922236|gb|EER95380.1| hypothetical protein
SORBIDRAFT_01g044940 [Sorghum bicolor]
Length = 1026
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F KM G++PDA +VINVIS C KD S HAY +RN Y +
Sbjct: 431 FCKMQIAGVAPDATTVINVISGCRYTKDLHVAKSIHAYAVRNRFESYQSVMNALLAMYAD 490
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISG 12
C +ST+ LF + +R ++SWNT+ISG
Sbjct: 491 CGDISTSYTLFQKMEVRMLISWNTMISG 518
>ref|XP_002446525.1| hypothetical protein SORBIDRAFT_06g017520 [Sorghum bicolor]
gi|241937708|gb|EES10853.1| hypothetical protein
SORBIDRAFT_06g017520 [Sorghum bicolor]
Length = 910
Score = 70.1 bits (170), Expect = 3e-10
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNGHF--XXXXXXXXXTFYC 99
FH+++STGI+PD++S I++++AC ++ D + GM H Y L+ TFY
Sbjct: 375 FHELLSTGIAPDSVSFISLLTACAQVGDVKAGMGVHGYILQRPVLLQETSLMNALVTFYS 434
Query: 98 ECDKLSTAIKLFSQKRIRNVVSWNTLISGCIH 3
CD+ A + F+ ++ +SWN ++S C H
Sbjct: 435 HCDRFDDAFRAFTDILNKDSISWNAILSACAH 466
>ref|XP_003581265.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g08490-like [Brachypodium
distachyon]
Length = 929
Score = 68.9 bits (167), Expect = 7e-10
Identities = 28/90 (31%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG--HFXXXXXXXXXTFYC 99
FH+++STG++PD++S+I++++AC ++ D + GM H Y R+ H +FY
Sbjct: 384 FHRLLSTGMTPDSVSLISLLTACAQVGDAKGGMGVHGYIFRHPVLHQETSLMNSLVSFYS 443
Query: 98 ECDKLSTAIKLFSQKRIRNVVSWNTLISGC 9
+C++ A+ F+ ++ +SWN ++S C
Sbjct: 444 QCNRFDDALHAFADILSKDSISWNAILSAC 473
>ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530484|gb|EEF32367.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 499
Score = 68.6 bits (166), Expect = 9e-10
Identities = 30/89 (33%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNGH-FXXXXXXXXXTFYCE 96
F +M GI PD +++++VISACT L D +TGM+ H+Y NG + Y +
Sbjct: 242 FWEMSDAGIRPDEVTIVSVISACTNLGDVETGMNVHSYINENGFGWMVSLCNALINMYAK 301
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGC 9
C + A ++F+ + +++++WN++IS C
Sbjct: 302 CGCVDRAWRVFNNMKRKSLITWNSMISAC 330
>ref|XP_004987140.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
mitochondrial-like [Setaria italica]
Length = 988
Score = 68.2 bits (165), Expect = 1e-09
Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F KM G++PDA ++INVIS C KD S HAY +RN Y
Sbjct: 430 FCKMQIKGVAPDATAIINVISGCRHTKDLYMAKSIHAYAVRNRFESNQSVMNTLLATYAG 489
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISG 12
C +ST+ LF + +R ++SWNT+ISG
Sbjct: 490 CGNISTSYTLFQKMEVRMLISWNTMISG 517
>ref|NP_001057491.1| Os06g0314100 [Oryza sativa Japonica Group]
gi|54291635|dbj|BAD62428.1| PPR-repeat protein-like
[Oryza sativa Japonica Group]
gi|113595531|dbj|BAF19405.1| Os06g0314100 [Oryza sativa
Japonica Group] gi|125597005|gb|EAZ36785.1| hypothetical
protein OsJ_21122 [Oryza sativa Japonica Group]
Length = 992
Score = 67.8 bits (164), Expect = 2e-09
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 266 KMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCECD 90
+M G+ PDA++VI+VIS C +D G S HAY +R+ Y +C
Sbjct: 435 RMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCG 494
Query: 89 KLSTAIKLFSQKRIRNVVSWNTLISG 12
+LS KLF +R ++SWNT+ISG
Sbjct: 495 QLSICCKLFHTMEVRTLISWNTIISG 520
>gb|EAZ00695.1| hypothetical protein OsI_22717 [Oryza sativa Indica Group]
Length = 992
Score = 67.8 bits (164), Expect = 2e-09
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = -2
Query: 266 KMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCECD 90
+M G+ PDA++VI+VIS C +D G S HAY +R+ Y +C
Sbjct: 435 RMQIEGVDPDALTVISVISKCRHTEDLHVGKSIHAYAVRSRLELNESVMNALLAMYADCG 494
Query: 89 KLSTAIKLFSQKRIRNVVSWNTLISG 12
+LS KLF +R ++SWNT+ISG
Sbjct: 495 QLSICCKLFHTMEVRTLISWNTIISG 520
>ref|XP_003561982.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21300-like [Brachypodium distachyon]
Length = 989
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F KM ++PDA +VI VI C +KD + S HAY +RN Y +
Sbjct: 431 FCKMQIENVAPDATTVIKVIYGCRHIKDLRMAKSIHAYAVRNRFELNQSVMNALLAMYGD 490
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISG 12
C +LS++ KLF + +R ++SWNT+ISG
Sbjct: 491 CGELSSSYKLFQKMEVRMLISWNTIISG 518
>gb|EYU25390.1| hypothetical protein MIMGU_mgv1a027153mg [Mimulus guttatus]
Length = 740
Score = 66.2 bits (160), Expect = 4e-09
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Frame = -2
Query: 272 FHKMVSTG---ISPDAISVINVISACTRLKDTQTGMSAHAYCLRNGHF-XXXXXXXXXTF 105
F KMVSTG I DA+S++NV+ AC +K + GM HAY +R G
Sbjct: 103 FEKMVSTGDISIRADAVSLVNVLPACASVKSWRRGMEIHAYAIRRGLLDDIFVGNAIVDM 162
Query: 104 YCECDKLSTAIKLFSQKRIRNVVSWNTLISG 12
Y +C + A +F + +++VVSWN L++G
Sbjct: 163 YAKCGLMDEAKNVFDRMEVKDVVSWNALVTG 193
>ref|XP_002885157.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297330997|gb|EFH61416.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 655
Score = 65.9 bits (159), Expect = 6e-09
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNGH-FXXXXXXXXXTFYCE 96
FH+M S+GI PD +++ +++AC+ L G S H YC+ NG+ Y +
Sbjct: 397 FHQMKSSGIRPDITTLLGILTACSNLAALGHGSSCHGYCVVNGYAVNTSICNALMDMYTK 456
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISG 12
C KL A ++F R++VSWNT++ G
Sbjct: 457 CGKLYVAKRVFDTMHKRDIVSWNTMLFG 484
>ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g22690 gi|9279687|dbj|BAB01244.1| unnamed protein
product [Arabidopsis thaliana]
gi|332643145|gb|AEE76666.1| uncharacterized protein
AT3G22690 [Arabidopsis thaliana]
Length = 842
Score = 65.5 bits (158), Expect = 7e-09
Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = -2
Query: 272 FHKMVSTGISPDAISVINVISACTRLKDTQTGMSAHAYCLRNG-HFXXXXXXXXXTFYCE 96
F+ M+ +G+ PD IS+++ IS+C++L++ G S H Y LRNG Y +
Sbjct: 325 FNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMK 384
Query: 95 CDKLSTAIKLFSQKRIRNVVSWNTLISGCI 6
C + TA ++F + + VV+WN++++G +
Sbjct: 385 CHRQDTAFRIFDRMSNKTVVTWNSIVAGYV 414