BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00049727
         (561 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    60   5e-07
gb|ABF97003.1| retrotransposon protein, putative, Ty1-copia subc...    59   7e-07
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...    58   1e-06
gb|AAO73268.1| putative polyprotein [Oryza sativa Japonica Group]      57   3e-06
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-...    55   1e-05

>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 59.7 bits (143), Expect = 5e-07
 Identities = 32/59 (54%), Positives = 38/59 (64%)
 Frame = -1

Query: 210 DMVRFVMAQTNLLILYLGDVPLTTAYVLNRVPSKSVTSTLYTLWTAITPKLSNLCP*GC 34
           DMVR +M+QTNLL+ + G    TTA+ LN VPSKSV  T Y +WT   P LS L   GC
Sbjct: 585 DMVRSMMSQTNLLLSFWGYALETTAFTLNSVPSKSVDKTPYEIWTGKRPSLSFLKIWGC 643


>gb|ABF97003.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 404

 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = -1

Query: 210 DMVRFVMAQTNLLILYLGDVPLTTAYVLNRVPSKSVTSTLYTLWTAITPKLSNLCP*GC 34
           DMVR +M+QT+L + + G  P T A+ LNRVPSKSV  T Y +WT   P LS L   GC
Sbjct: 267 DMVRSMMSQTDLPLSFWGYAPETVAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGC 325


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = -1

Query: 210  DMVRFVMAQTNLLILYLGDVPLTTAYVLNRVPSKSVTSTLYTLWTAITPKLSNLCP*GC 34
            +MVR +M+QTNLL+ + G    T A+ LNRVPSKSV  T Y +WT   P LS L   GC
Sbjct: 1085 NMVRSMMSQTNLLLSFWGYALETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGC 1143


>gb|AAO73268.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 478

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 29/54 (53%), Positives = 36/54 (66%)
 Frame = -1

Query: 210 DMVRFVMAQTNLLILYLGDVPLTTAYVLNRVPSKSVTSTLYTLWTAITPKLSNL 49
           DMVR +M+QT+L + + G  P T A+ LNRVPSKSV  T Y +WT   P LS L
Sbjct: 320 DMVRSMMSQTDLPLSFWGYAPETVAFTLNRVPSKSVDKTPYEIWTGKRPSLSFL 373


>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
           sativa Japonica Group] gi|77550379|gb|ABA93176.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 938

 Score = 55.5 bits (132), Expect = 1e-05
 Identities = 30/59 (50%), Positives = 37/59 (62%)
 Frame = -1

Query: 210 DMVRFVMAQTNLLILYLGDVPLTTAYVLNRVPSKSVTSTLYTLWTAITPKLSNLCP*GC 34
           DMVR +M+QT+L + + G    T A+ LNRVPSKSV  T Y +WT   P LS L   GC
Sbjct: 494 DMVRSMMSQTDLPLSFWGYTLETAAFTLNRVPSKSVDKTPYEIWTGKRPSLSFLKIWGC 552