BLASTX nr result
ID: Cocculus23_contig00049712
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00049712
(586 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 42 7e-13
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript... 46 2e-10
gb|ABK28243.1| unknown [Arabidopsis thaliana] 46 2e-10
gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thali... 46 2e-10
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 45 2e-09
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 40 2e-09
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 43 2e-08
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 45 2e-08
ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204... 44 2e-08
gb|ABK28152.1| unknown [Arabidopsis thaliana] 36 3e-08
gb|ABE65413.1| hypothetical protein At1g62890 [Arabidopsis thali... 36 3e-08
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 38 6e-08
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 38 1e-07
emb|CAB86676.1| putative protein [Arabidopsis thaliana] 43 1e-07
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript... 37 1e-07
ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcript... 42 2e-07
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 38 2e-07
ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, part... 39 2e-07
ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcript... 35 3e-07
gb|ABW81026.1| reverse transcriptase [Arabidopsis lyrata subsp. ... 38 3e-07
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 41.6 bits (96), Expect(3) = 7e-13
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = -3
Query: 377 NVNP*CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALYL 261
++ P C C + ES EHLFF C FS++IW +RAL L
Sbjct: 1023 SIPPTCVLCNDLDESREHLFFRCQFSSEIWSFFMRALNL 1061
Score = 40.8 bits (94), Expect(3) = 7e-13
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 383
FS W+ ++ + W + VWF +H+P+ AF W ++ RL ++L ++
Sbjct: 968 FSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLHTRDRLRRW 1020
Score = 36.6 bits (83), Expect(3) = 7e-13
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -2
Query: 222 WILKQCKINSKVDIIVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKVED 43
W L + + + +I KL+F A ++ +W ERN+R RP I+ I V+ +++
Sbjct: 1073 WTLTASR-DRNITLITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIVRARLDP 1131
Query: 42 CSR 34
SR
Sbjct: 1132 LSR 1134
>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
to a family of Arabidopsis thaliana predicted proteins,
which have similarity to reverse transcriptases; see
T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
Length = 332
Score = 46.2 bits (108), Expect(3) = 2e-10
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 383
FS W+++ ++ W + VWF NH+P+HAF W ++ RL ++L +
Sbjct: 111 FSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNW 163
Score = 34.7 bits (78), Expect(3) = 2e-10
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = -2
Query: 222 WILKQCKINSKVDIIVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKVED 43
W+L + + +I++L F +C++ +W ERN R +R I+ I ++ +++
Sbjct: 216 WLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDP 274
Query: 42 CSR 34
SR
Sbjct: 275 LSR 277
Score = 30.0 bits (66), Expect(3) = 2e-10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C C +S HLFF C FS +W
Sbjct: 171 CLLCNAHDDSRAHLFFECQFSGVVW 195
>gb|ABK28243.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 46.2 bits (108), Expect(3) = 2e-10
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 383
FS W+++ ++ W + VWF NH+P+HAF W ++ RL ++L +
Sbjct: 111 FSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNW 163
Score = 34.7 bits (78), Expect(3) = 2e-10
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = -2
Query: 222 WILKQCKINSKVDIIVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKVED 43
W+L + + +I++L F +C++ +W ERN R +R I+ I ++ +++
Sbjct: 216 WLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDP 274
Query: 42 CSR 34
SR
Sbjct: 275 LSR 277
Score = 30.0 bits (66), Expect(3) = 2e-10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C C +S HLFF C FS +W
Sbjct: 171 CLLCNAHDDSRAHLFFECQFSGVVW 195
>gb|ABE65512.1| hypothetical protein At4g04650 [Arabidopsis thaliana]
Length = 296
Score = 46.2 bits (108), Expect(3) = 2e-10
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 383
FS W+++ ++ W + VWF NH+P+HAF W ++ RL ++L +
Sbjct: 111 FSAPRTWSALHPQSHTVPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNW 163
Score = 34.7 bits (78), Expect(3) = 2e-10
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = -2
Query: 222 WILKQCKINSKVDIIVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKVED 43
W+L + + +I++L F +C++ +W ERN R +R I+ I ++ +++
Sbjct: 216 WLLSPSR-EKNICLIIRLAFHSCVYAIWRERNQRLHSGVSRSTESILKDIQLIIRARLDP 274
Query: 42 CSR 34
SR
Sbjct: 275 LSR 277
Score = 30.0 bits (66), Expect(3) = 2e-10
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C C +S HLFF C FS +W
Sbjct: 171 CLLCNAHDDSRAHLFFECQFSGVVW 195
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 45.1 bits (105), Expect(3) = 2e-09
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALY 264
C CRNA ES +HLFFSC FS+++W +++Y
Sbjct: 1324 CLLCRNATESRDHLFFSCSFSSEVWEMSAKSIY 1356
Score = 36.6 bits (83), Expect(3) = 2e-09
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKL 392
FS K WN+ R W + VWF + P+ +F +W RL+ +K+
Sbjct: 1264 FSTKETWNNTRTMGIEVPWHKGVWFTHSTPKFSFCVWLAVYDRLSTGDKM 1313
Score = 25.8 bits (55), Expect(3) = 2e-09
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 180 IVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVK 58
I + +F ++ +W ERN R R Q+V I ++++
Sbjct: 1383 IARYIFQVSVYAIWRERNRRKHGRNPNQAAQLVRWIDKQIR 1423
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 40.0 bits (92), Expect(3) = 2e-09
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKFRT 377
F K WN++R W + VWFP P+++F LW RL+ +++ + +
Sbjct: 1336 FITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNS 1390
Score = 37.4 bits (85), Expect(3) = 2e-09
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C+ C NA E+ +HLFFSC +++ +W
Sbjct: 1396 CTLCNNAEETRDHLFFSCQYTSYVW 1420
Score = 29.6 bits (65), Expect(3) = 2e-09
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = -2
Query: 180 IVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKV 49
+ + VF A I+H+W ERN R + P +++ I + V+ ++
Sbjct: 1455 LFRYVFQASIYHIWRERNARRHGEISSPTNRLIKLIDKTVRNRI 1498
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 43.1 bits (100), Expect(3) = 2e-08
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLS 389
FS K WN +RKK+ W + VWF + P++ F W LA+ N+LS
Sbjct: 444 FSTKDTWNQVRKKSNEVAWYKGVWFSHSTPKYQFCTW------LALRNRLS 488
Score = 37.4 bits (85), Expect(3) = 2e-08
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C+FC + E+ +HLFFSC +++ IW
Sbjct: 504 CTFCSTSIETRDHLFFSCSYASAIW 528
Score = 23.1 bits (48), Expect(3) = 2e-08
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = -2
Query: 174 KLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVK 58
+ +F +H VW ERN R + R ++ + ++++
Sbjct: 565 RYIFQLTVHTVWKERNDRRHGEEPRTSANLISWMDKQIR 603
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 45.1 bits (105), Expect(2) = 2e-08
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLS 389
FS K WN IR + W + VWF IP+HAF +W RL+ ++++
Sbjct: 287 FSTKDTWNHIRTVSNKVAWYKGVWFAQAIPKHAFCMWLAVHNRLSTGDRMT 337
Score = 39.3 bits (90), Expect(2) = 2e-08
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALY 264
C C A ES +HLFFSC F+ +IW + +Y
Sbjct: 347 CILCNKALESRDHLFFSCPFATEIWEPLAKTIY 379
>ref|XP_004148188.1| PREDICTED: uncharacterized protein LOC101204314 [Cucumis sativus]
Length = 282
Score = 43.9 bits (102), Expect(2) = 2e-08
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKFRTM*ILN 362
FS S W +IR + W+ L+W +IP+H+F W RL +LS++ L+
Sbjct: 108 FSITSAWETIRPHSSRVGWSGLLWGGGNIPKHSFCAWLAIRDRLGTRGRLSRWDRSIPLS 167
Query: 361 VLFAG 347
L G
Sbjct: 168 CLLCG 172
Score = 40.4 bits (93), Expect(2) = 2e-08
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALYLKRREVYCGIK 231
C C +ES +HLFFSCHF +IW + L R Y G++
Sbjct: 168 CLLCGGNYESRDHLFFSCHFGWEIWSRILLLKSSSHRTGYWGVE 211
>gb|ABK28152.1| unknown [Arabidopsis thaliana]
Length = 196
Score = 36.2 bits (82), Expect(3) = 3e-08
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 532 KSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKFRT 377
K WN+I W + VWFP P+++F LW RL+ + + + +
Sbjct: 6 KVTWNNIGMHQPQTNWYKGVWFPYSTPKYSFLLWLTIQNRLSTGDHIKAWNS 57
Score = 35.8 bits (81), Expect(3) = 3e-08
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C+ C NA E+ LFFSCH+++++W
Sbjct: 63 CTLCGNAEETRNLLFFSCHYTSEVW 87
Score = 31.2 bits (69), Expect(3) = 3e-08
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 207 CKINSKVDIIV--KLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKV 49
C N D++ + VF A ++H+W ERN R + P +++ I + V+ ++
Sbjct: 111 CNTNMPTDLLFLFRYVFQASVYHIWRERNARRHGEISSPPNRLIKFIDKNVRNRI 165
>gb|ABE65413.1| hypothetical protein At1g62890 [Arabidopsis thaliana]
Length = 195
Score = 36.2 bits (82), Expect(3) = 3e-08
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -1
Query: 532 KSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKFRT 377
K WN+I W + VWFP P+++F LW RL+ + + + +
Sbjct: 6 KVTWNNIGMHQPQTNWYKGVWFPYSTPKYSFLLWLTIQNRLSTGDHIKAWNS 57
Score = 35.8 bits (81), Expect(3) = 3e-08
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C+ C NA E+ LFFSCH+++++W
Sbjct: 63 CTLCGNAEETRNLLFFSCHYTSEVW 87
Score = 31.2 bits (69), Expect(3) = 3e-08
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 207 CKINSKVDIIV--KLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKV 49
C N D++ + VF A ++H+W ERN R + P +++ I + V+ ++
Sbjct: 111 CNTNMPTDLLFLFRYVFQASVYHIWRERNARRHGEISSPPNRLIKFIDKNVRNRI 165
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 38.1 bits (87), Expect(3) = 6e-08
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 380 NNVNP*CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALY 264
N + C FC+ E+ +HLFF+C F++ IW R ++
Sbjct: 1092 NGIATDCIFCQGTLETRDHLFFTCSFTSVIWVDLARGIF 1130
Score = 37.7 bits (86), Expect(3) = 6e-08
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKL 392
FS + W+ R + W +++WF + P+++F W + GRL +++
Sbjct: 1038 FSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRM 1087
Score = 26.2 bits (56), Expect(3) = 6e-08
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -2
Query: 174 KLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVK 58
+ VF A I+ VW ERN R Q+VG I ++++
Sbjct: 1159 RYVFQATIYIVWRERNGRRHGEPPNTASQLVGWIDKQIR 1197
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 38.1 bits (87), Expect(3) = 1e-07
Identities = 20/51 (39%), Positives = 26/51 (50%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLS 389
FS K WN IR + W + VWF + P+ +F W LAI N+LS
Sbjct: 760 FSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAW------LAIRNRLS 804
Score = 37.0 bits (84), Expect(3) = 1e-07
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALYLKR 255
C FC + E+ +HLFF C +S++IW + +Y R
Sbjct: 820 CVFCSSPMETRDHLFFQCCYSSEIWTSIAKNVYKDR 855
Score = 26.2 bits (56), Expect(3) = 1e-07
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 174 KLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVK 58
+ F IH +W ERN R K+R ++ I + ++
Sbjct: 881 RYTFQVSIHSIWRERNSRRHGEKSRSASNLIRQIDKTIR 919
>emb|CAB86676.1| putative protein [Arabidopsis thaliana]
Length = 534
Score = 42.7 bits (99), Expect(2) = 1e-07
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -3
Query: 380 NNVNP*CSFCRNAFESCEHLFFSCHFSNKIW 288
N+ N CSFC A E+ EH+FFSC +S+ +W
Sbjct: 140 NDANGGCSFCDEAMETREHIFFSCPYSSAVW 170
Score = 38.9 bits (89), Expect(2) = 1e-07
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 383
FS K ++IR N + + VWFPN P+++F W RLA KL K+
Sbjct: 86 FSSKDILHAIRVPNPICELYKGVWFPNSTPKYSFITWIAFRNRLATGEKLVKW 138
>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 295
Score = 37.4 bits (85), Expect(3) = 1e-07
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKL 392
FS + W IR + W ++VWF +IPR + W RL ++L
Sbjct: 109 FSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRL 158
Score = 33.5 bits (75), Expect(3) = 1e-07
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 225 TWILKQCKINSKVDIIVKLVFSACIHHVWWERNMR*F 115
+WIL Q + S I+KL+ + ++HVW ERN R F
Sbjct: 213 SWIL-QLPLRSHSTTILKLLLQSAVYHVWKERNARIF 248
Score = 30.0 bits (66), Expect(3) = 1e-07
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 353 CRNAFESCEHLFFSCHFSNKIW 288
C N E+ HLFF C FS IW
Sbjct: 172 CSNGDETHAHLFFECSFSLAIW 193
>ref|NP_175039.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana]
gi|332193871|gb|AEE31992.1| RNA-directed DNA polymerase
(reverse transcriptase)-related family protein
[Arabidopsis thaliana]
Length = 320
Score = 42.4 bits (98), Expect(3) = 2e-07
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -1
Query: 517 SIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKL 392
++ +N W + VWF NH+P+HAF W ++ RL ++L
Sbjct: 141 ALHPQNHIVPWYKAVWFKNHVPKHAFICWVVAWNRLHTRDRL 182
Score = 30.0 bits (66), Expect(3) = 2e-07
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C C + ES HLFF C F +W
Sbjct: 193 CLLCNSHDESRAHLFFECPFCGAVW 217
Score = 28.1 bits (61), Expect(3) = 2e-07
Identities = 14/63 (22%), Positives = 31/63 (49%)
Frame = -2
Query: 222 WILKQCKINSKVDIIVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVKVKVED 43
W+L + + +I++L F A ++ +W ERN+ R ++ I ++ +++
Sbjct: 238 WLLNPSR-DKNTTLIIRLAFQAYVYAIWRERNLCLHTGVARVFDSVLKDIQLTIRARLDP 296
Query: 42 CSR 34
SR
Sbjct: 297 ISR 299
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 38.1 bits (87), Expect(3) = 2e-07
Identities = 15/55 (27%), Positives = 30/55 (54%)
Frame = -1
Query: 544 EFSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKFR 380
+FS + WN+IR W + VWF P+ +F +W + RL+ ++++ ++
Sbjct: 1261 QFSTRDTWNNIRTTATKVTWYKGVWFYQATPKFSFCVWLAALDRLSTGDRMANWK 1315
Score = 35.0 bits (79), Expect(3) = 2e-07
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = -3
Query: 362 CSFCRNAFESCEHLFFSCHFSNKIW 288
C FC + +S +HLFF+C +S+++W
Sbjct: 1322 CVFCNHPTKSRDHLFFNCPYSSEVW 1346
Score = 26.9 bits (58), Expect(3) = 2e-07
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 198 NSKVDIIVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIMEEVK 58
N + +V+ F A ++ +W ERN R +++G I ++V+
Sbjct: 1375 NRVENFLVRYAFQASVYSIWSERNRRRHGNTLHSATRLIGWIDKQVR 1421
>ref|XP_006300939.1| hypothetical protein CARUB_v10021318mg, partial [Capsella rubella]
gi|482569649|gb|EOA33837.1| hypothetical protein
CARUB_v10021318mg, partial [Capsella rubella]
Length = 290
Score = 38.9 bits (89), Expect(3) = 2e-07
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 541 FSFKSGWNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKL 392
FS W S W + VWF IP+HAF W + RL ++L
Sbjct: 95 FSTSKTWISTHPAGPLVPWFKSVWFKERIPKHAFISWVVIRNRLTTRDRL 144
Score = 33.5 bits (75), Expect(3) = 2e-07
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 377 NVNP*CSFCRNAFESCEHLFFSCHFSNKIW 288
NV C C ++ ES HLFF C +S+++W
Sbjct: 150 NVPSECLLCTSSAESRLHLFFECAYSHEVW 179
Score = 27.7 bits (60), Expect(3) = 2e-07
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 198 NSKVDIIVKLVFSACIHHVWWERNMR 121
+ K+ I KL+F A ++ +W ERN R
Sbjct: 206 SKKLRTICKLIFQAVVYGLWRERNSR 231
>ref|NP_178356.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
protein [Arabidopsis thaliana] gi|3184287|gb|AAC18934.1|
putative non-LTR retroelement reverse transcriptase
[Arabidopsis thaliana] gi|330250497|gb|AEC05591.1|
RNA-directed DNA polymerase (reverse
transcriptase)-related family protein [Arabidopsis
thaliana]
Length = 211
Score = 35.4 bits (80), Expect(3) = 3e-07
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 368 P*CSFCRNAFESCEHLFFSCHFSNKIW 288
P C FC E+ +HLFF C F+ ++W
Sbjct: 83 PLCLFCNTHDETRQHLFFDCEFAREVW 109
Score = 32.7 bits (73), Expect(3) = 3e-07
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -2
Query: 246 LLWHKEGTWILKQCKINSKVDIIVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAIME 67
LL+ W+ C+ + V I++L A ++ +W ERN R +RP ++ I
Sbjct: 122 LLFEDGIRWLKNPCQ-DKNVTTILRLSHHASVYTIWKERNARLHDSASRPAAALILEIKS 180
Query: 66 EVKVKVEDCSR 34
++ ++ SR
Sbjct: 181 VIRCHLDPLSR 191
Score = 31.6 bits (70), Expect(3) = 3e-07
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 523 WNSIRKKNQFFKWTELVWFPNHIPRHAFTLWKLSSGRLAIANKL 392
W + + W + +WF IP+HAF W RL +++
Sbjct: 31 WLHLNPIGERVDWFKAIWFKGKIPKHAFIAWVNMRHRLHTKDRM 74
>gb|ABW81026.1| reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
Length = 181
Score = 38.1 bits (87), Expect(3) = 3e-07
Identities = 14/39 (35%), Positives = 26/39 (66%)
Frame = -3
Query: 377 NVNP*CSFCRNAFESCEHLFFSCHFSNKIWWKRLRALYL 261
NV+ C FC+++ E+ +H+FF+C +S +W + + L L
Sbjct: 78 NVDASCVFCKDSRETKDHMFFNCPYSRTVWKELVSGLLL 116
Score = 33.9 bits (76), Expect(3) = 3e-07
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -1
Query: 487 WTELVWFPNHIPRHAFTLWKLSSGRLAIANKLSKF 383
W + +WF N P++AF W ++ R+A +++ K+
Sbjct: 41 WYQDIWFSNASPKYAFFTWLVAKNRIATGDRMIKW 75
Score = 27.7 bits (60), Expect(3) = 3e-07
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 180 IVKLVFSACIHHVWWERNMR*FQRKNRPILQIVGAI 73
IV+ VF IH +W ERN R + P +IV I
Sbjct: 142 IVRYVFQNTIHSIWRERNDRRHGEQPSPTEKIVKLI 177