BLASTX nr result
ID: Cocculus23_contig00049552
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00049552
(260 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containi... 90 3e-16
ref|XP_004287415.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-15
ref|XP_007018314.1| Tetratricopeptide repeat-like superfamily pr... 78 1e-12
ref|XP_007018313.1| Tetratricopeptide repeat-like superfamily pr... 78 1e-12
ref|XP_002527345.1| pentatricopeptide repeat-containing protein,... 77 2e-12
ref|XP_006472401.1| PREDICTED: pentatricopeptide repeat-containi... 74 3e-11
gb|EXC01172.1| hypothetical protein L484_025549 [Morus notabilis] 70 4e-10
ref|XP_006856598.1| hypothetical protein AMTR_s00046p00214930 [A... 69 7e-10
emb|CBI19307.3| unnamed protein product [Vitis vinifera] 67 3e-09
ref|XP_003615371.1| Pentatricopeptide repeat-containing protein ... 65 1e-08
ref|XP_006364980.1| PREDICTED: pentatricopeptide repeat-containi... 64 3e-08
ref|XP_004490470.1| PREDICTED: pentatricopeptide repeat-containi... 64 3e-08
ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containi... 63 5e-08
ref|XP_004238030.1| PREDICTED: pentatricopeptide repeat-containi... 62 1e-07
ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containi... 60 3e-07
ref|XP_007141301.1| hypothetical protein PHAVU_008G184300g [Phas... 57 3e-06
>ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 90.1 bits (222), Expect = 3e-16
Identities = 48/86 (55%), Positives = 61/86 (70%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTDVESTIYVP 81
EFRK + S + EKSPSVSY RS T + +R LDFREA+S + E T VES YVP
Sbjct: 18 EFRKYSASFLPSEKSPSVSYQRS---TQLDGVSEARCLDFREALSFIREGTKVESAFYVP 74
Query: 80 LLQECIYRQSVSEAQIVHAHIIKTGS 3
+LQECI ++ VS+AQ +HAHI+KTG+
Sbjct: 75 ILQECIDKKLVSDAQKIHAHIVKTGA 100
>ref|XP_004287415.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Fragaria vesca subsp. vesca]
Length = 765
Score = 87.8 bits (216), Expect = 1e-15
Identities = 51/89 (57%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKS--PSVSYHRSYTTTTPERNPNSRSLDFREAVSILNE-STDVESTI 90
EFRK S+I EKS +VSY +S T T+ + + RSLDFREA+ I E S V+S+
Sbjct: 18 EFRKHPTSSISSEKSGIANVSYQKSQTITSLDGSSEPRSLDFREALEIFREGSNKVDSSY 77
Query: 89 YVPLLQECIYRQSVSEAQIVHAHIIKTGS 3
YVPLLQECI R S S AQ VH HIIKTGS
Sbjct: 78 YVPLLQECIERNSASNAQAVHGHIIKTGS 106
>ref|XP_007018314.1| Tetratricopeptide repeat-like superfamily protein isoform 2
[Theobroma cacao] gi|508723642|gb|EOY15539.1|
Tetratricopeptide repeat-like superfamily protein
isoform 2 [Theobroma cacao]
Length = 546
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/85 (45%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = -1
Query: 254 RKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNS-RSLDFREAVSILNESTDVESTIYVPL 78
RK + +++ +KSPS+SY R++ T + S RS+DF+EA+S + + + +E++ YVPL
Sbjct: 20 RKHSPASLSTDKSPSISYPRTHKFTQLDGKSESVRSMDFQEALSRIKDGSRIETSYYVPL 79
Query: 77 LQECIYRQSVSEAQIVHAHIIKTGS 3
LQECI R S++ AQ +H+HIIKTG+
Sbjct: 80 LQECIDRNSLAGAQNLHSHIIKTGT 104
>ref|XP_007018313.1| Tetratricopeptide repeat-like superfamily protein isoform 1
[Theobroma cacao] gi|508723641|gb|EOY15538.1|
Tetratricopeptide repeat-like superfamily protein
isoform 1 [Theobroma cacao]
Length = 763
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/85 (45%), Positives = 62/85 (72%), Gaps = 1/85 (1%)
Frame = -1
Query: 254 RKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNS-RSLDFREAVSILNESTDVESTIYVPL 78
RK + +++ +KSPS+SY R++ T + S RS+DF+EA+S + + + +E++ YVPL
Sbjct: 20 RKHSPASLSTDKSPSISYPRTHKFTQLDGKSESVRSMDFQEALSRIKDGSRIETSYYVPL 79
Query: 77 LQECIYRQSVSEAQIVHAHIIKTGS 3
LQECI R S++ AQ +H+HIIKTG+
Sbjct: 80 LQECIDRNSLAGAQNLHSHIIKTGT 104
>ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223533264|gb|EEF35017.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 687
Score = 77.4 bits (189), Expect = 2e-12
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Frame = -1
Query: 260 EFRKSTQSAIWP-EKSPSVSYHRSYTTTTPERNPNS-RSLDFREAVSILNESTDVESTIY 87
E RK S+ P EKSPS SY RS T + + + L+F EA+ + E +E + Y
Sbjct: 18 ELRKHPSSSSLPTEKSPSTSYQRSSINTQLDGSLEPIKPLEFHEALCFIKEEKKIEPSYY 77
Query: 86 VPLLQECIYRQSVSEAQIVHAHIIKTGS 3
+PLLQEC + SVSEAQ++HAHIIKTG+
Sbjct: 78 LPLLQECTKKNSVSEAQVIHAHIIKTGT 105
>ref|XP_006472401.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Citrus sinensis]
Length = 758
Score = 73.6 bits (179), Expect = 3e-11
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Frame = -1
Query: 248 STQSAIWPEKSPSVSYHRSYTTTTPERNPNS---RSLDFREAVSILNESTDVESTIYVPL 78
S+ A +K+ +VSY RS + + N NS RSL F+EA+S+L E V+++ YV L
Sbjct: 22 SSSLATLKDKNHTVSYQRSGSKLI-QLNGNSEPVRSLGFQEALSVLTEGPKVQTSSYVSL 80
Query: 77 LQECIYRQSVSEAQIVHAHIIKTGS 3
LQEC+ R+S+S A+I+HAHI+KTGS
Sbjct: 81 LQECVNRKSLSNAEIIHAHIVKTGS 105
>gb|EXC01172.1| hypothetical protein L484_025549 [Morus notabilis]
Length = 763
Score = 69.7 bits (169), Expect = 4e-10
Identities = 42/86 (48%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPN-SRSLDFREAVSILNESTDVESTIYV 84
+ RK + EKSPSVSY RS + T E S S DFREA+S + E ES+ Y
Sbjct: 19 DLRKHPSVFLSNEKSPSVSYQRSGSITHLEGTSELSSSTDFREALSAMREGASTESSHYA 78
Query: 83 PLLQECIYRQSVSEAQIVHAHIIKTG 6
LL+ CI S S A+ VHAHIIKTG
Sbjct: 79 RLLKRCIDDNSSSTAETVHAHIIKTG 104
>ref|XP_006856598.1| hypothetical protein AMTR_s00046p00214930 [Amborella trichopoda]
gi|548860479|gb|ERN18065.1| hypothetical protein
AMTR_s00046p00214930 [Amborella trichopoda]
Length = 400
Score = 68.9 bits (167), Expect = 7e-10
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Frame = -1
Query: 227 PEKSP-SVSYHRSYTTTTP-ERNPNSRSLDFREAVSILNESTDVESTIYVPLLQECIYRQ 54
PEK+ S+SY R TTTT E+ + + L F EA+SIL E V+S+IY LLQECI ++
Sbjct: 30 PEKAAASLSYQRYPTTTTVMEKTTSFQQLHFSEALSILCEDHKVDSSIYAALLQECIRKK 89
Query: 53 SVSEAQIVHAHIIKTG 6
S+S+AQ V AH+IK+G
Sbjct: 90 SLSDAQAVQAHMIKSG 105
>emb|CBI19307.3| unnamed protein product [Vitis vinifera]
Length = 683
Score = 66.6 bits (161), Expect = 3e-09
Identities = 37/66 (56%), Positives = 44/66 (66%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTDVESTIYVP 81
EFRK + S + EKSPSVSY RS T + +R LDFREA+S + E T VES YVP
Sbjct: 18 EFRKYSASFLPSEKSPSVSYQRS---TQLDGVSEARCLDFREALSFIREGTKVESAFYVP 74
Query: 80 LLQECI 63
+LQECI
Sbjct: 75 ILQECI 80
>ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516706|gb|AES98329.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 765
Score = 64.7 bits (156), Expect = 1e-08
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTD-VESTIYV 84
+FRK ++ +K S+S +++ +T + N R+L F+EA S+ ES + V+S+ Y
Sbjct: 21 QFRKYPPTSFPIDKGQSISLQKTHISTHLDPN---RNLKFQEAFSLAKESNEEVDSSFYP 77
Query: 83 PLLQECIYRQSVSEAQIVHAHIIKTGS 3
PLLQ+C+ S S QI+H HI+KTGS
Sbjct: 78 PLLQQCLENCSFSSTQIIHCHIVKTGS 104
>ref|XP_006364980.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Solanum tuberosum]
Length = 755
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/86 (39%), Positives = 57/86 (66%), Gaps = 1/86 (1%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTD-VESTIYV 84
EF+K++ +++ EK ++++ ++ +L+FREA+S++ E ++ VES YV
Sbjct: 18 EFKKNSVTSLPFEK-------KNHSPINSDKALEPLNLEFREALSLIKEGSEKVESASYV 70
Query: 83 PLLQECIYRQSVSEAQIVHAHIIKTG 6
P LQECI ++SVSEA+ +H HIIK G
Sbjct: 71 PFLQECIKKKSVSEAEAIHGHIIKMG 96
>ref|XP_004490470.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cicer arietinum]
Length = 747
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTD-VESTIYV 84
+FRK + ++ +K ++S +S+T T + R L+F+EA+S+ E + V+S+ Y+
Sbjct: 29 QFRKHSPTSFPLDKGQTISLQKSHTFTHLDP---IRHLNFQEALSLAKECQEKVDSSFYI 85
Query: 83 PLLQECIYRQSVSEAQIVHAHIIKTGS 3
PLLQ+C+ S S QI+H HI+KTGS
Sbjct: 86 PLLQQCLESCSFSATQIIHCHIVKTGS 112
>ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 754
Score = 62.8 bits (151), Expect = 5e-08
Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTDVESTI-YV 84
+F K + S+ PEK S+S+ +S+ T LDF EA+ + E T+ E + YV
Sbjct: 18 QFPKYSPSSYPPEKGQSISFQKSHRFT---------HLDFGEALLLNKEGTEEEEKLFYV 68
Query: 83 PLLQECIYRQSVSEAQIVHAHIIKTG 6
PLLQ+C+ ++S S QIVH H++KTG
Sbjct: 69 PLLQQCLDKRSYSGTQIVHGHVMKTG 94
>ref|XP_004238030.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Solanum lycopersicum]
Length = 755
Score = 61.6 bits (148), Expect = 1e-07
Identities = 34/86 (39%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = -1
Query: 260 EFRKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTD-VESTIYV 84
EF+K++ + + EK ++++ ++ +++FREA+S++ E ++ VES YV
Sbjct: 18 EFKKNSVTPLPFEK-------KNHSPMNSDKALEPLNVEFREALSLIKEGSEKVESASYV 70
Query: 83 PLLQECIYRQSVSEAQIVHAHIIKTG 6
PLLQECI SVSEA+ +H HIIK G
Sbjct: 71 PLLQECIKNNSVSEAKAIHGHIIKMG 96
>ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Frame = -1
Query: 227 PEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTDVESTI-YVPLLQECIYRQS 51
PEK S+S+ +S+ T LDF E + + E T+ E + YVPLLQ+C+ +S
Sbjct: 32 PEKGQSISFQKSHRFT---------HLDFGETLLLTKEGTEEEEKLFYVPLLQQCLDTRS 82
Query: 50 VSEAQIVHAHIIKTG 6
SE QIVH H++KTG
Sbjct: 83 YSETQIVHGHVMKTG 97
>ref|XP_007141301.1| hypothetical protein PHAVU_008G184300g [Phaseolus vulgaris]
gi|561014434|gb|ESW13295.1| hypothetical protein
PHAVU_008G184300g [Phaseolus vulgaris]
Length = 754
Score = 57.0 bits (136), Expect = 3e-06
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -1
Query: 254 RKSTQSAIWPEKSPSVSYHRSYTTTTPERNPNSRSLDFREAVSILNESTD-VESTIYVPL 78
RK + S+ EK S+S+ +S T +LDFREA+S+ E T+ VE + Y L
Sbjct: 20 RKYSPSSYPTEKGQSISFQKSQRFT---------NLDFREALSLAGEGTEEVEQSFYSEL 70
Query: 77 LQECIYRQSVSEAQIVHAHIIKTG 6
LQ+C S S+ QIVH H +KTG
Sbjct: 71 LQQCRDEFSNSDTQIVHGHALKTG 94