BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00048795
         (357 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAT38797.2| Polyprotein, putative [Solanum demissum]               108   8e-22
emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera]   100   2e-19
emb|CAN71523.1| hypothetical protein VITISV_037361 [Vitis vinifera]   100   4e-19
gb|AAT38786.2| Gag-pol polyprotein, putative [Solanum demissum]        98   1e-18
emb|CAN78207.1| hypothetical protein VITISV_023428 [Vitis vinifera]    97   2e-18
emb|CAN62929.1| hypothetical protein VITISV_041092 [Vitis vinifera]    96   4e-18
emb|CAN69956.1| hypothetical protein VITISV_032883 [Vitis vinifera]    96   5e-18
emb|CAN69334.1| hypothetical protein VITISV_003274 [Vitis vinifera]    96   5e-18
emb|CAN59755.1| hypothetical protein VITISV_034567 [Vitis vinifera]    93   3e-17
emb|CAN74228.1| hypothetical protein VITISV_000583 [Vitis vinifera]    88   1e-15
ref|XP_007014929.1| Uncharacterized protein TCM_040529 [Theobrom...    85   9e-15
ref|XP_007019503.1| Uncharacterized protein TCM_035607 [Theobrom...    85   1e-14
ref|XP_007045487.1| Uncharacterized protein TCM_011252 [Theobrom...    85   1e-14
gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsi...    85   1e-14
ref|XP_007010924.1| Copia-like retrotransposable element, putati...    84   3e-14
ref|XP_007030765.1| Uncharacterized protein TCM_026511 [Theobrom...    84   3e-14
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi...    82   6e-14
gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768...    82   6e-14
gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]                82   6e-14
pir||B84500 probable retroelement pol polyprotein [imported] - A...    81   2e-13

>gb|AAT38797.2| Polyprotein, putative [Solanum demissum]
          Length = 1793

 Score =  108 bits (270), Expect = 8e-22
 Identities = 50/102 (49%), Positives = 69/102 (67%), Gaps = 5/102 (4%)
 Frame = +1

Query: 67  TLR*KAELWNKRMRHFHY-----FAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNK 231
           TL+    LW+KR  HF+        KK+LV+ M        +C  CQ GK+ +LPF  N+
Sbjct: 561 TLQTCTNLWHKRFGHFNLRSIAEMKKKELVENMPEFLSNAQVCETCQQGKQTKLPFQANQ 620

Query: 232 AWKAD*KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
            W+A+ KLQLIHTDVCGP++T S+SG++YF++FIDDY+ MCW
Sbjct: 621 VWRANQKLQLIHTDVCGPIKTDSLSGNKYFLLFIDDYTRMCW 662


>emb|CAN64779.1| hypothetical protein VITISV_043230 [Vitis vinifera]
          Length = 1102

 Score =  100 bits (250), Expect = 2e-19
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 5/95 (5%)
 Frame = +1

Query: 88  LWNKRMRHFHYFA-----KKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD*K 252
           LW++R+ HFH+ A     K DL +G+         C  CQ GK+ RLPF  NKAW+A  K
Sbjct: 273 LWHRRLGHFHHSALLFMKKNDLGEGLPELEVKPXTCVACQYGKQTRLPFPQNKAWRATQK 332

Query: 253 LQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           LQL+HTDV GP RT S++GS++++ FIDD++ MCW
Sbjct: 333 LQLVHTDVGGPQRTPSLNGSKFYIAFIDDHTRMCW 367


>emb|CAN71523.1| hypothetical protein VITISV_037361 [Vitis vinifera]
          Length = 338

 Score = 99.8 bits (247), Expect = 4e-19
 Identities = 46/97 (47%), Positives = 66/97 (68%), Gaps = 5/97 (5%)
 Frame = +1

Query: 82  AELWNKRMRHFHY-----FAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD 246
           ++LW++R  H++        K +LV+ M        +C +CQ GK+ARLP   N+AW+A 
Sbjct: 119 SDLWHERFGHYNQRSLVDLKKLELVEDMPNVSDEAQICEICQQGKQARLPLKNNQAWRAI 178

Query: 247 *KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
            KLQLIHT VCGPM+T S+SG++Y ++FIDDY+ MCW
Sbjct: 179 EKLQLIHTGVCGPMKTTSLSGNKYSILFIDDYTRMCW 215


>gb|AAT38786.2| Gag-pol polyprotein, putative [Solanum demissum]
          Length = 1140

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 45/95 (47%), Positives = 63/95 (66%), Gaps = 5/95 (5%)
 Frame = +1

Query: 88  LWNKRMRHFHY-----FAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD*K 252
           +W+KR+   ++        KDLV  M        +CGVCQ+GK ++ PF +N+AW+A  K
Sbjct: 463 VWHKRLGQINFKSLKLMQNKDLVADMPSINETSNVCGVCQIGKLSQSPFPINQAWRATEK 522

Query: 253 LQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           LQLIHTDVCGPM T S +GS+YF++FI+D +  CW
Sbjct: 523 LQLIHTDVCGPMSTPSYNGSKYFLLFINDLTRFCW 557


>emb|CAN78207.1| hypothetical protein VITISV_023428 [Vitis vinifera]
          Length = 856

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 5/97 (5%)
 Frame = +1

Query: 82  AELWNKRMRHFH-----YFAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD 246
           AELW++R+ HFH     Y  K++LV+ +  +   +A C  CQ GK+ R PF    AW+  
Sbjct: 305 AELWHRRLGHFHHVGLLYMQKQNLVKSVPLSEDKLAYCVACQYGKQTRRPF-PQTAWRVM 363

Query: 247 *KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
            KLQL+HTDV GP +T S++GS+Y++ FIDDY+  CW
Sbjct: 364 HKLQLVHTDVGGPQKTPSLNGSKYYIAFIDDYTRFCW 400


>emb|CAN62929.1| hypothetical protein VITISV_041092 [Vitis vinifera]
          Length = 1014

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
 Frame = +1

Query: 88  LWNKRMRHFH-----YFAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD*K 252
           LW+KR+ HFH     Y  K  +V+G+      + +C  CQ GK+ R  F    AWK+  K
Sbjct: 330 LWHKRLGHFHHNVMLYMKKNQIVEGLPDLEEELPICAACQYGKQTRRHFPKKAAWKSTQK 389

Query: 253 LQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           LQL+HTDV GP +T S+ GS+Y++ FIDDY+  CW
Sbjct: 390 LQLVHTDVSGPQKTPSLKGSKYYIAFIDDYTRFCW 424


>emb|CAN69956.1| hypothetical protein VITISV_032883 [Vitis vinifera]
          Length = 811

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 49/107 (45%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
 Frame = +1

Query: 52  LTMGSTLR*KAELWNKRMRHFH-----YFAKKDLVQGMTFNRGAVAMCGVCQLGKKARLP 216
           +T  ST+   AELW++R+ HFH     Y  K +LV+G+      +A C  CQ GK+ R P
Sbjct: 109 MTFSSTVS-NAELWHRRLGHFHHVGLLYMHKHNLVKGVPLLEDKLADCVACQYGKQTRRP 167

Query: 217 FLVNKAWKAD*KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           F     WKA  KLQL+HTDV GP +T S++GS+Y+  FI DY+ +CW
Sbjct: 168 F-PQTTWKAMHKLQLVHTDVGGPQKTPSLNGSKYYNAFIGDYTRLCW 213


>emb|CAN69334.1| hypothetical protein VITISV_003274 [Vitis vinifera]
          Length = 923

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 46/98 (46%), Positives = 67/98 (68%), Gaps = 6/98 (6%)
 Frame = +1

Query: 82  AELWNKRMRHFHY----FAKK--DLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKA 243
           AELW++R+ HFH+    + +K  +LV+G+      +A C  CQ GK+ R+PF    AW+A
Sbjct: 331 AELWHRRLEHFHHVGLLYMQKHVNLVKGVPLLEDKLABCVACQYGKQTRIPF-PQTAWRA 389

Query: 244 D*KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
             KLQL+HTDV GP +T S++GS+Y++ FIDDY+  CW
Sbjct: 390 MHKLQLVHTDVGGPQKTPSLNGSKYYIAFIDDYTRFCW 427


>emb|CAN59755.1| hypothetical protein VITISV_034567 [Vitis vinifera]
          Length = 1333

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 41/95 (43%), Positives = 59/95 (62%), Gaps = 5/95 (5%)
 Frame = +1

Query: 88  LWNKRMRHFH-----YFAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD*K 252
           LW+KR+ HFH     Y  K  +V+G+      + +C  CQ GK+ RLPF    AWK+  K
Sbjct: 377 LWHKRLGHFHHNAVLYXKKNQIVEGLPDLEEELPICAACQYGKQTRLPFPQKXAWKSTQK 436

Query: 253 LQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           LQL++TDV GP +T  +  S+Y++ FIDD++  CW
Sbjct: 437 LQLVYTDVSGPQKTPXLKXSKYYIAFIDDFTRFCW 471


>emb|CAN74228.1| hypothetical protein VITISV_000583 [Vitis vinifera]
          Length = 909

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 5/97 (5%)
 Frame = +1

Query: 82  AELWNKRMRHFH-----YFAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD 246
           AELW++R+ HFH     Y  K +LV+G+      +A C  CQ GK+ R PF    AW+A 
Sbjct: 355 AELWHRRLGHFHHVGVLYMQKHNLVKGVPLLEDKLADCVACQYGKQTRRPF-PQTAWRAM 413

Query: 247 *KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
            KLQL+HT+V  P +T S++GS Y++ FIDDY+   W
Sbjct: 414 HKLQLVHTNVGXPQKTPSLNGSMYYIAFIDDYTRFRW 450


>ref|XP_007014929.1| Uncharacterized protein TCM_040529 [Theobroma cacao]
           gi|508785292|gb|EOY32548.1| Uncharacterized protein
           TCM_040529 [Theobroma cacao]
          Length = 1266

 Score = 85.1 bits (209), Expect = 9e-15
 Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 5/98 (5%)
 Frame = +1

Query: 79  KAELWNKRMRHFHY-FAKK----DLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKA 243
           +A LW++R+ H +Y F K     +LV  M         C VC  GK++R PF      +A
Sbjct: 455 EARLWHRRLGHINYQFIKNMGSLNLVNDMPVITEVEKTCEVCLQGKQSRHPFPKQSQTRA 514

Query: 244 D*KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
             +LQLIHTD+CGP+ T S++G++YF++FIDD+S  CW
Sbjct: 515 TNRLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCW 552


>ref|XP_007019503.1| Uncharacterized protein TCM_035607 [Theobroma cacao]
           gi|508724831|gb|EOY16728.1| Uncharacterized protein
           TCM_035607 [Theobroma cacao]
          Length = 648

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
 Frame = +1

Query: 82  AELWNKRMRHFHY-----FAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD 246
           +E W+KR+ H +Y      +  +LV+G+        +C +CQ  K  R  F +  +WK  
Sbjct: 147 SETWHKRLSHLNYNSLNLVSSNELVEGLPQITKLDKLCSICQFRKHTRKSFPIVSSWKVI 206

Query: 247 *KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
            KL+ +HTD+ GPM+T S+SGS+Y+++FIDD +  CW
Sbjct: 207 MKLEPVHTDISGPMKTPSLSGSKYYILFIDDITSYCW 243


>ref|XP_007045487.1| Uncharacterized protein TCM_011252 [Theobroma cacao]
           gi|508709422|gb|EOY01319.1| Uncharacterized protein
           TCM_011252 [Theobroma cacao]
          Length = 296

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 5/96 (5%)
 Frame = +1

Query: 85  ELWNKRMRHFHY-----FAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD* 249
           ELW++R+ H +Y      + ++ V+G+      V +CG+ Q  K++RL F     WKA  
Sbjct: 142 ELWHRRLGHINYNSLQKMSSQESVKGLPRITKHVTVCGIYQYEKQSRLSFPKEMKWKATE 201

Query: 250 KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           KLQLIHTD+ GPM   S+ GSRYF++FIDD ++  W
Sbjct: 202 KLQLIHTDLGGPMNIPSLGGSRYFLLFIDDVTMYSW 237


>gb|AAD17409.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1347

 Score = 84.7 bits (208), Expect = 1e-14
 Identities = 40/96 (41%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
 Frame = +1

Query: 85  ELWNKRMRH-----FHYFAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD* 249
           E W+KR+ H           K+LV G+   +     C  C LGK++R  F      K   
Sbjct: 454 ETWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKETCKACNLGKQSRKSFPKESQTKTRE 513

Query: 250 KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           KL+++HTDVCGPM+  SI GSRY+++F+DDY+ MCW
Sbjct: 514 KLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCW 549


>ref|XP_007010924.1| Copia-like retrotransposable element, putative [Theobroma cacao]
           gi|508727837|gb|EOY19734.1| Copia-like retrotransposable
           element, putative [Theobroma cacao]
          Length = 1207

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
 Frame = +1

Query: 91  WNKRMRHFHYFAKK-----DLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD*KL 255
           W+KR+ H ++ + K      LV+ +        +C  CQ GK+++ PF     W+A  KL
Sbjct: 380 WHKRLGHLNFHSLKLMHDEHLVENIPAIGSFNYICDTCQYGKQSKKPFPKQAKWRATQKL 439

Query: 256 QLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           QL+HTD+ GPM TAS+SG++++++FID++S  CW
Sbjct: 440 QLVHTDIGGPMMTASLSGNKFYLLFIDEFSRYCW 473


>ref|XP_007030765.1| Uncharacterized protein TCM_026511 [Theobroma cacao]
           gi|508719370|gb|EOY11267.1| Uncharacterized protein
           TCM_026511 [Theobroma cacao]
          Length = 1318

 Score = 83.6 bits (205), Expect = 3e-14
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
 Frame = +1

Query: 79  KAELWNKRMRHFHY-FAKK----DLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKA 243
           +A LW++R+ H +Y F K     +LV  M         C VC  GK++R PF      + 
Sbjct: 455 EARLWHRRLGHINYQFIKNMGSLNLVNDMPIITEVEKTCEVCLQGKQSRHPFPKQSQTRT 514

Query: 244 D*KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
             +LQLIHTD+CGP+ T S++G++YF++FIDD+S  CW
Sbjct: 515 ANRLQLIHTDICGPIGTLSLNGNKYFILFIDDFSRFCW 552


>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
           gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
           thaliana]
          Length = 1334

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
 Frame = +1

Query: 88  LWNKRMRHFHY-----FAKKDLVQGMT-FNRGAV-AMCGVCQLGKKARLPFLVNKAWKAD 246
           +W+KR  H ++      A+K++V+G+  F+ G   A+C +C  GK+ R       AWK+ 
Sbjct: 434 MWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKST 493

Query: 247 *KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
             LQL+HTD+CGP+  AS SG RY + FIDD+S  CW
Sbjct: 494 QVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCW 530


>gb|AAG51247.1|AC055769_6 copia-type polyprotein, putative; 28768-32772 [Arabidopsis
           thaliana]
          Length = 1334

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
 Frame = +1

Query: 88  LWNKRMRHFHY-----FAKKDLVQGMT-FNRGAV-AMCGVCQLGKKARLPFLVNKAWKAD 246
           +W+KR  H ++      A+K++V+G+  F+ G   A+C +C  GK+ R       AWK+ 
Sbjct: 434 MWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKST 493

Query: 247 *KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
             LQL+HTD+CGP+  AS SG RY + FIDD+S  CW
Sbjct: 494 QVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCW 530


>gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]
          Length = 1207

 Score = 82.4 bits (202), Expect = 6e-14
 Identities = 41/97 (42%), Positives = 60/97 (61%), Gaps = 7/97 (7%)
 Frame = +1

Query: 88  LWNKRMRHFHY-----FAKKDLVQGMT-FNRGAV-AMCGVCQLGKKARLPFLVNKAWKAD 246
           +W+KR  H ++      A+K++V+G+  F+ G   A+C +C  GK+ R       AWK+ 
Sbjct: 339 MWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKST 398

Query: 247 *KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
             LQL+HTD+CGP+  AS SG RY + FIDD+S  CW
Sbjct: 399 QVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCW 435


>pir||B84500 probable retroelement pol polyprotein [imported] - Arabidopsis
           thaliana
          Length = 616

 Score = 80.9 bits (198), Expect = 2e-13
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
 Frame = +1

Query: 85  ELWNKRMRH-----FHYFAKKDLVQGMTFNRGAVAMCGVCQLGKKARLPFLVNKAWKAD* 249
           ELW++R+ H           K +V G         +CGVC+LGK+ R  F      K   
Sbjct: 242 ELWHRRLGHVGNSRMEQMHNKKMVDGFPNFHVNKEICGVCKLGKQVREAFPTESQTKTKE 301

Query: 250 KLQLIHTDVCGPMRTASISGSRYFMIFIDDYSIMCW 357
           KL+++HT+VCGPM+T S++GS YF++ +DDY+ M W
Sbjct: 302 KLEIVHTNVCGPMQTESLNGSIYFLLLVDDYTHMAW 337