BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00047294
         (280 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...    76   4e-12
emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulga...    75   1e-11
ref|XP_007027495.1| Uncharacterized protein TCM_022315 [Theobrom...    74   3e-11
ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663...    72   1e-10
ref|XP_007031450.1| LINE-type retrotransposon LIb DNA, Insertion...    71   2e-10
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga...    71   2e-10
ref|XP_004173733.1| PREDICTED: uncharacterized protein LOC101232...    70   2e-10
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    70   4e-10
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    69   5e-10
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    69   5e-10
gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]        69   7e-10
gb|AAX95804.1| retrotransposon protein, putative, unclassified [...    69   9e-10
gb|AAC24057.1| Contains similarity to reverse transcriptase-like...    68   1e-09
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    68   1e-09
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        67   2e-09
gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou...    67   2e-09
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    67   2e-09
emb|CAN76904.1| hypothetical protein VITISV_016347 [Vitis vinifera]    67   2e-09
emb|CAN66642.1| hypothetical protein VITISV_008302 [Vitis vinifera]    67   2e-09
emb|CAN63585.1| hypothetical protein VITISV_026806 [Vitis vinifera]    67   2e-09

>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
           subsp. vesca]
          Length = 958

 Score = 76.3 bits (186), Expect = 4e-12
 Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
 Frame = -2

Query: 255 QDCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMF 76
           QDC PLLD+I+ R++ W+  +LS AGR +LI+SV  +  VYW+    LP K LK I+   
Sbjct: 606 QDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRL 665

Query: 75  ARFLFSGGHS-KSIHLLNWEAICKPK 1
             FL++G  S ++   + W  IC PK
Sbjct: 666 RCFLWAGNCSGRAATKVAWSEICLPK 691


>emb|CCA66050.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1357

 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 37/83 (44%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = -2

Query: 246  KPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARF 67
            + LLD++  +L+GWK  LLS AG+  LI++V QA   Y  GV+ LP   +++I S  ARF
Sbjct: 773  RELLDRMWKKLRGWKEKLLSRAGKEVLIKAVIQALPTYLMGVYKLPVAVIQEIHSAMARF 832

Query: 66   LFSG-GHSKSIHLLNWEAICKPK 1
             + G G  + +H L+WE +CKPK
Sbjct: 833  WWGGKGDERKMHWLSWEKMCKPK 855


>ref|XP_007027495.1| Uncharacterized protein TCM_022315 [Theobroma cacao]
           gi|508716100|gb|EOY07997.1| Uncharacterized protein
           TCM_022315 [Theobroma cacao]
          Length = 667

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
 Frame = -2

Query: 261 SSQDCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDS 82
           S Q  KP+++K + RL GWK   LS+ GR  L+RSV  +  +++  +F +P + +K+++ 
Sbjct: 212 SIQTWKPIIEKFETRLAGWKAKTLSIGGRVALLRSVLSSLPIFYMSIFQIPKRVIKELEK 271

Query: 81  MFARFLFSGGHSK-SIHLLNWEAICKPK 1
           +  RFL+ G   K  IH + W  +C  K
Sbjct: 272 IERRFLWCGSEKKQKIHYIEWSKVCNYK 299


>ref|XP_006605183.1| PREDICTED: uncharacterized protein LOC102663533 [Glycine max]
          Length = 514

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
 Frame = -2

Query: 243 PLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARFL 64
           PL++KI  +++ W   LLS+AGR +L+RS+  A   YW  VF +P K +++IDS+   F+
Sbjct: 262 PLVEKIVGKIRHWSSKLLSIAGRIQLVRSIITAIAQYWMSVFPMPKKVIQKIDSICRSFI 321

Query: 63  FSG-GHSKSIHLLNWEAICKP 4
           +SG    K   L+ W+ +CKP
Sbjct: 322 WSGSAEVKRKSLVAWKQVCKP 342


>ref|XP_007031450.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
           protein [Theobroma cacao] gi|508710479|gb|EOY02376.1|
           LINE-type retrotransposon LIb DNA, Insertion at the S11
           site-like protein [Theobroma cacao]
          Length = 620

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
 Frame = -2

Query: 246 KPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARF 67
           K L+DK+++RL  WK + LS  GR  L++SV  +  +Y     S+P +  K+I+ +   F
Sbjct: 343 KSLIDKVRSRLCAWKASSLSSTGRLTLVQSVLTSIPLYTMQTISIPLEICKKIELLCRNF 402

Query: 66  LFSG-GHSKSIHLLNWEAICKPK 1
           L+ G G SK +HLL W  +CKPK
Sbjct: 403 LWHGDGQSKKVHLLRWSTLCKPK 425


>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1114

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
 Frame = -2

Query: 249  CKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFAR 70
            CKPL+DKI  R QGW  +LLS AGR +L++++  +   YW  +F LP K +K +++   +
Sbjct: 774  CKPLIDKITTRAQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRK 833

Query: 69   FLFSGGHSKSIHL-LNWEAICKPK 1
            FL++G    S    + W+ + +PK
Sbjct: 834  FLWTGTVDTSYKAPVAWDFLQQPK 857


>ref|XP_004173733.1| PREDICTED: uncharacterized protein LOC101232446, partial [Cucumis
           sativus]
          Length = 382

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = -2

Query: 258 SQDCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSM 79
           S DC PL+ +I +R++ W   +LS AGR +L+RSV ++  VYW+ VF LP K  + +D +
Sbjct: 50  SCDCDPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSLQVYWASVFMLPMKVHRDVDKI 109

Query: 78  FARFLFSG-GHSKSIHLLNWEAICKP 4
              +L+ G    +    + W+ +C P
Sbjct: 110 LRSYLWRGKEEGRGGAKVAWDEVCLP 135


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 69.7 bits (169), Expect = 4e-10
 Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
 Frame = -2

Query: 261 SSQDCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDS 82
           ++ DC PL+++++ +++ W    LS AGR  LI S   +   +W   F LP   +++ID 
Sbjct: 670 TASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDK 729

Query: 81  MFARFLFSGGH-SKSIHLLNWEAICKPK 1
           + + FL+SG   S +   ++WEAICKPK
Sbjct: 730 LCSAFLWSGTELSSNKAKVSWEAICKPK 757


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = -2

Query: 261  SSQDCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDS 82
            S+ DC PLL++++ R+  W    LS AGR  LI SV  +   +W   F LP K +++++ 
Sbjct: 782  STTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEK 841

Query: 81   MFARFLFSGGHSKSIHL-LNWEAICKPK 1
            M + FL+SG    S    ++W  +CKPK
Sbjct: 842  MCSAFLWSGTEMNSNKAKISWHMVCKPK 869


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 30/83 (36%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
 Frame = -2

Query: 246 KPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARF 67
           +P++DKI+ +L  WK ++LS+AGR +LI+SV Q+  ++   ++  PS  LK++++ F  F
Sbjct: 418 QPIVDKIKTKLSNWKASILSIAGRVQLIKSVAQSMLIHTITIYDWPSFLLKELETCFRNF 477

Query: 66  LFSGGHSK-SIHLLNWEAICKPK 1
           ++SG  +K  +  + W+ +CKP+
Sbjct: 478 IWSGDITKRKLVTVAWKKLCKPQ 500


>gb|ABV21212.1| Ty1_Copia-element protein [Arabidopsis thaliana]
          Length = 438

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
 Frame = -2

Query: 246 KPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARF 67
           +PL+ KI+A+L  W    LS AGR +L+ SV     V+W   F LP   +++I+SM ARF
Sbjct: 51  EPLVVKIKAKLNFWAVKSLSFAGRLQLLSSVISGIVVFWMSTFRLPKGCIREIESMCARF 110

Query: 66  LFSGG---HSKSIHLLNWEAICKPK 1
           L+SGG   H K+   ++W  +C PK
Sbjct: 111 LWSGGTDEHHKA--KVSWSTVCLPK 133


>gb|AAX95804.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group] gi|77548920|gb|ABA91717.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa Japonica Group]
          Length = 849

 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = -2

Query: 234 DKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARFLFSG 55
           DKI+ RL  WKC LLS  G+A L+ S    S +Y  G + LP +T +++DS+ +RF + G
Sbjct: 492 DKIEKRLSTWKCGLLSYGGKAILVNS----SPMYMMGFYMLPEQTHQRMDSIRSRFFWEG 547

Query: 54  -GHSKSIHLLNWEAICKPK 1
               +  H++ WEA+C+PK
Sbjct: 548 IERKRKYHMVKWEALCRPK 566


>gb|AAC24057.1| Contains similarity to reverse transcriptase-like protein
           gb|2244803 from A. thaliana chromosome 4 contig
           gb|Z97336 [Arabidopsis thaliana]
          Length = 404

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = -2

Query: 261 SSQDCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDS 82
           S+ D  PLL+KI+ R+  W    LS AGR  LI SV  +   +W   F LP   ++++D 
Sbjct: 75  SAADYLPLLEKIRQRIGSWTARFLSFAGRLNLISSVLWSICNFWMAAFRLPRGCIREVDK 134

Query: 81  MFARFLFSGGHSKSIHL-LNWEAICKPK 1
           + + FL+SG   K+    ++W+ ICKPK
Sbjct: 135 ICSAFLWSGQEMKTTKAKVSWQEICKPK 162


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
 Frame = -2

Query: 252  DCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFA 73
            DC PLL+KI++R+  WK   LS AGR +L+ SV  +   +W   F LP   +++I+ + A
Sbjct: 1040 DCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISA 1099

Query: 72   RFLFSG----GHSKSIHLLNWEAICKPK 1
             FL+SG     H   +    W  +CKPK
Sbjct: 1100 AFLWSGTDLNPHKAKV---AWHDVCKPK 1124


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 37/84 (44%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
 Frame = -2

Query: 246  KPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARF 67
            +PLL+KI AR + W    LS AGR +LI SV   S  +W   F LP   +K+I+S+ +RF
Sbjct: 780  EPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRF 839

Query: 66   LFSGG--HSKSIHLLNWEAICKPK 1
            L+SG    +K I  ++W A+C PK
Sbjct: 840  LWSGNIEQAKGIK-VSWAALCLPK 862


>gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group]
           gi|31430304|gb|AAP52238.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 764

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = -2

Query: 234 DKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARFLFSG 55
           +KI+ RL  WKC  LS  G+A LI S   +  +Y  GV+ LP     ++DS+ ARF + G
Sbjct: 307 NKIEKRLATWKCGYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEG 366

Query: 54  GHSK-SIHLLNWEAICKPK 1
              K   H++ WEA+C+PK
Sbjct: 367 LEKKRKYHMIKWEALCRPK 385


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = -2

Query: 261 SSQDCKPLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDS 82
           SS D  PL++ I+ ++  W    LS AGR  LI SV  +   +W G F LP + +++ID 
Sbjct: 164 SSTDYLPLIEHIKKKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIREIDK 223

Query: 81  MFARFLFSGGH-SKSIHLLNWEAICKPK 1
           M + +L+SGG  + S   + W  +CKPK
Sbjct: 224 MCSAYLWSGGDLNTSKAKIAWTDVCKPK 251


>emb|CAN76904.1| hypothetical protein VITISV_016347 [Vitis vinifera]
          Length = 909

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = -2

Query: 243 PLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARFL 64
           P++++I  RL GW+   LS  GR  LI+S       Y+  +F +P+    +I+ M   FL
Sbjct: 506 PVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFL 565

Query: 63  FSG-GHSKSIHLLNWEAICKPK 1
           +SG G  K  HL+NW+ +CKPK
Sbjct: 566 WSGVGEGKRDHLVNWDVVCKPK 587


>emb|CAN66642.1| hypothetical protein VITISV_008302 [Vitis vinifera]
          Length = 611

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = -2

Query: 243 PLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARFL 64
           P++++I  RL GW+   LS  GR  LI+S       Y+  +F +P+    +I+ M   FL
Sbjct: 267 PVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFL 326

Query: 63  FSG-GHSKSIHLLNWEAICKPK 1
           +SG G  K  HL+NW+ +CKPK
Sbjct: 327 WSGVGEGKRDHLVNWDVVCKPK 348


>emb|CAN63585.1| hypothetical protein VITISV_026806 [Vitis vinifera]
          Length = 684

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = -2

Query: 243 PLLDKIQARLQGWKCNLLSMAGRAELIRSVRQASHVYWSGVFSLPSKTLKQIDSMFARFL 64
           P++++I  RL GW+   LS  GR  LI+S       Y+  +F +P+    +I+ M   FL
Sbjct: 236 PVIERISRRLDGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPASVAAKIERMQREFL 295

Query: 63  FSG-GHSKSIHLLNWEAICKPK 1
           +SG G  K  HL+NW+ +CKPK
Sbjct: 296 WSGVGEGKRDHLVNWDVVCKPK 317