BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00046389
         (695 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EXC31837.1| Transposon Ty3-I Gag-Pol polyprotein [Morus notab...   162   2e-45
emb|CAN59997.1| hypothetical protein VITISV_020888 [Vitis vinifera]   153   5e-45
gb|AAP43915.1| integrase [Gossypium herbaceum]                        152   2e-44
emb|CAN68955.1| hypothetical protein VITISV_014191 [Vitis vinifera]   153   5e-44
emb|CAJ65807.1| polyprotein [Citrus sinensis]                         150   3e-43
ref|XP_007028157.1| DNA/RNA polymerases superfamily protein [The...   151   4e-43
ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [The...   149   6e-43
emb|CAC44142.1| putative polyprotein [Cicer arietinum]                145   1e-42
ref|XP_007221234.1| hypothetical protein PRUPE_ppb019121mg [Prun...   147   2e-42
ref|XP_007036977.1| DNA/RNA polymerases superfamily protein [The...   149   2e-42
ref|XP_007010454.1| Uncharacterized protein TCM_044274 [Theobrom...   149   2e-42
ref|XP_007099710.1| Retrotransposon protein, Ty3-gypsy subclass,...   149   2e-42
ref|XP_007023829.1| DNA/RNA polymerases superfamily protein [The...   150   5e-42
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic...   153   1e-41
gb|ADB85337.1| putative retrotransposon protein [Phyllostachys e...   143   1e-41
emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa Japonica Group]         146   2e-41
ref|XP_007049932.1| Uncharacterized protein TCM_003206 [Theobrom...   144   2e-41
ref|XP_007028176.1| DNA/RNA polymerases superfamily protein [The...   149   2e-41
gb|AAX92776.1| retrotransposon protein, putative, Ty3-gypsy sub-...   145   2e-41
gb|AAP43918.1| integrase [Gossypium hirsutum]                         143   2e-41

>gb|EXC31837.1| Transposon Ty3-I Gag-Pol polyprotein [Morus notabilis]
          Length = 1088

 Score =  162 bits (409), Expect(2) = 2e-45
 Identities = 83/193 (43%), Positives = 123/193 (63%), Gaps = 4/193 (2%)
 Frame = -1

Query: 695  VADALSRKSR*S----KIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGR 528
            VADALSRKS         E       VG FDL   +  N+  +  +     + Q ++ G+
Sbjct: 716  VADALSRKSHGVLTSLAFEDWNRLATVGSFDLQCYEDSNKACIFNIVATPTLKQLVKQGQ 775

Query: 527  DKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALH 348
              D+E+ ++ +  ++G  ++ W+I  EGFL  + KL V ND++LR  +  EA ++K+++H
Sbjct: 776  WHDEEHSEVWNQFQSGEQIEGWQISPEGFLIRKGKLVVLNDSDLRDAVLYEAHRSKFSIH 835

Query: 347  PGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNV 168
             G  KMY +LK+ YWWRGMK+DV ++V++C  C+QVKA+H+RPSG LQPL IP+ KWD+V
Sbjct: 836  LGSTKMYMDLKRQYWWRGMKRDVVNFVAKCSICKQVKADHQRPSGELQPLPIPDWKWDHV 895

Query: 167  AMDFVGALPRNQK 129
             MDFV  LPR Q+
Sbjct: 896  TMDFVTGLPRTQE 908



 Score = 47.8 bits (112), Expect(2) = 2e-45
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = -3

Query: 132  EKRNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
            E  + V V+VDRLTK AHF+PI++   V K   LY++ IV LHG
Sbjct: 908  EGYDAVWVVVDRLTKTAHFIPIRADYKVPKLCRLYIERIVTLHG 951


>emb|CAN59997.1| hypothetical protein VITISV_020888 [Vitis vinifera]
          Length = 893

 Score =  153 bits (387), Expect(2) = 5e-45
 Identities = 82/199 (41%), Positives = 126/199 (63%), Gaps = 6/199 (3%)
 Frame = -1

Query: 695 VADALSRKS--R*SKIE--KA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGR 528
           VADALSRK+  + S +E  +  M+ ++ DF+L +    +   L ++     ++Q+I + +
Sbjct: 397 VADALSRKNVGQLSSLELREFEMHAVIEDFELCLGLEGHGPCLYSILARPMVIQRIVEAQ 456

Query: 527 DKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALH 348
             D+   K+ + L  G I ++W +  +G + F+ +LCVP D  LR  +  +A + KY +H
Sbjct: 457 VHDEFLEKVKAQLVAGEIDENWSMYEDGSVWFKGRLCVPKDVGLRNELLADAHKAKYTIH 516

Query: 347 PGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNV 168
           PG  KMY +LK+ +W  GMK+D+  +V+ C  CQQVKAEH+RP+GLLQPL IPE KWDN+
Sbjct: 517 PGNTKMYQDLKRQFWCNGMKRDIAQFVANCQICQQVKAEHQRPAGLLQPLPIPEWKWDNI 576

Query: 167 AMDFVGALP--RNQKREIW 117
            MDFV  LP  R++K  +W
Sbjct: 577 TMDFVIRLPRTRSKKNGVW 595



 Score = 54.7 bits (130), Expect(2) = 5e-45
 Identities = 26/43 (60%), Positives = 34/43 (79%)
 Frame = -3

Query: 129 KRNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           K+N V VIVDRLTK AHFL +K+T  +N   +LY++EIV+LHG
Sbjct: 590 KKNGVWVIVDRLTKSAHFLAMKTTNSMNSLAKLYIQEIVRLHG 632


>gb|AAP43915.1| integrase [Gossypium herbaceum]
          Length = 350

 Score =  152 bits (384), Expect(2) = 2e-44
 Identities = 85/196 (43%), Positives = 123/196 (62%), Gaps = 3/196 (1%)
 Frame = -1

Query: 695 VADALSRKSR*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGRDKDD 516
           VADALSRKS  +          +   ++ +    + VL++ +     +  QIR+ +  D+
Sbjct: 93  VADALSRKSLFA----------LRAMNVYLSILPDNVLVAELKAKPLLTHQIREAQKVDE 142

Query: 515 EYV-KMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALHPGG 339
           E + K    + N     +++ID +  LRFR++LCVP ++EL  +I +EA  ++ A+HPG 
Sbjct: 143 ELLAKRAECVLNK--ESEFQIDDDDCLRFRSRLCVPKNSELILIILNEAHCSRMAIHPGS 200

Query: 338 DKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNVAMD 159
            KMY +LK+ +WW GMK+D+ D+VSRCL CQQVKAEH+ PSGLLQP+ IPE KWD V MD
Sbjct: 201 TKMYNDLKRRFWWHGMKRDIFDFVSRCLICQQVKAEHQVPSGLLQPITIPEWKWDRVTMD 260

Query: 158 FVGALP--RNQKREIW 117
           FV  LP   ++K  IW
Sbjct: 261 FVSGLPLSASKKDAIW 276



 Score = 53.9 bits (128), Expect(2) = 2e-44
 Identities = 22/45 (48%), Positives = 35/45 (77%)
 Frame = -3

Query: 135 SEKRNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           + K++ + V+VDRLTK AHF+P+++   ++K  ELYV +IV+LHG
Sbjct: 269 ASKKDAIWVVVDRLTKSAHFIPVRTDFSLDKLAELYVSQIVRLHG 313


>emb|CAN68955.1| hypothetical protein VITISV_014191 [Vitis vinifera]
          Length = 480

 Score =  153 bits (387), Expect(2) = 5e-44
 Identities = 80/199 (40%), Positives = 120/199 (60%), Gaps = 6/199 (3%)
 Frame = -1

Query: 695 VADALSRKSR*SK----IEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGR 528
           V DALSRKS        + +  M+ ++ D++L +        L ++      +Q+I + +
Sbjct: 21  VVDALSRKSYGQLSSLGLREFEMHAVIEDYELCLSWEGQGPCLYSILARPMFIQRIVEAQ 80

Query: 527 DKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALH 348
             D+   K+ + L  G + ++W +  +G +RFR +LCVP D +LR  +   A + KY +H
Sbjct: 81  VHDEFLEKVKARLVEGEVDENWSMHVDGSVRFRGRLCVPRDVZLRNELLTYAHRAKYIIH 140

Query: 347 PGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNV 168
            G  KMY +LK+ +WW GMK+D+  YV+ C TCQQVK EH+RP GLLQPL IPE KWD++
Sbjct: 141 LGSTKMYQDLKRXFWWSGMKRDIVQYVANCQTCQQVKTEHQRPVGLLQPLPIPEWKWDHI 200

Query: 167 AMDFVGALP--RNQKREIW 117
            MDFV  LP  R++K  +W
Sbjct: 201 TMDFVIRLPRTRSKKNGVW 219



 Score = 51.2 bits (121), Expect(2) = 5e-44
 Identities = 24/43 (55%), Positives = 34/43 (79%)
 Frame = -3

Query: 129 KRNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           K+N V VIVDRLTK+AHFL +K+   +N   +LY++EI++LHG
Sbjct: 214 KKNGVWVIVDRLTKLAHFLAMKTIDSMNFLAKLYIQEIMRLHG 256


>emb|CAJ65807.1| polyprotein [Citrus sinensis]
          Length = 533

 Score =  150 bits (380), Expect(2) = 3e-43
 Identities = 79/192 (41%), Positives = 120/192 (62%), Gaps = 4/192 (2%)
 Frame = -1

Query: 695 VADALSRKSR*S--KIEKA*MY*LVGDFDLGVKKAKNE--VLLSTMDCILDIVQQIRDGR 528
           VADALSRKS  S   +    M  L+    LGV+   +    L++       ++ ++   +
Sbjct: 254 VADALSRKSFSSIAHLRGTYMPLLIELRSLGVELEVDNCRALIANFRVRPTLIDKVHQMQ 313

Query: 527 DKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALH 348
           D+D + +K+  +++  +   D+ +   G L   N+LCVP+  EL++ I +EA  + YA+H
Sbjct: 314 DQDLQLLKLKENVQKDL-RTDFAVRDNGVLVMGNRLCVPDIKELKKEIMEEAHCSAYAMH 372

Query: 347 PGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNV 168
           PG  KMY  L+ HYWW+GMK+++ ++VSRCL CQQ+KAEH+RP+G  QPL IPE KW+++
Sbjct: 373 PGSTKMYRTLRDHYWWQGMKREIAEFVSRCLVCQQIKAEHQRPAGFSQPLPIPEWKWEHI 432

Query: 167 AMDFVGALPRNQ 132
            MDFV  LPR Q
Sbjct: 433 TMDFVTGLPRTQ 444



 Score = 51.6 bits (122), Expect(2) = 3e-43
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           V+VDRLTK  HFLP K+T  ++K G ++V EIV+LHG
Sbjct: 452 VVVDRLTKSTHFLPFKTTYSMDKLGNIFVAEIVRLHG 488


>ref|XP_007028157.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508716762|gb|EOY08659.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 937

 Score =  151 bits (381), Expect(2) = 4e-43
 Identities = 82/196 (41%), Positives = 122/196 (62%), Gaps = 10/196 (5%)
 Frame = -1

Query: 695 VADALSRKS----------R*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQ 546
           VADALSRKS          R S +++      +GD  + ++ A+   LL+       ++ 
Sbjct: 380 VADALSRKSMGSLAHISIGRRSLVKEIHS---LGDIGVRLEVAETNALLAHFRVRPILMD 436

Query: 545 QIRDGRDKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQ 366
           +I++ + KD+  +K + D R G     +   ++G LR+  +L VP+   LRR I +EA  
Sbjct: 437 RIKEAQSKDEFVIKALEDPR-GKKGKMFTKGTDGVLRYGTRLYVPDSDGLRREILEEAHM 495

Query: 365 TKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPE 186
             Y +HPG  KMY +LK+ YWW G+K+DV ++VS+CL CQQVKAEH++P+GLLQPL +PE
Sbjct: 496 AAYVIHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPE 555

Query: 185 SKWDNVAMDFVGALPR 138
            KW+++AMDFV  LPR
Sbjct: 556 WKWEHIAMDFVTGLPR 571



 Score = 50.4 bits (119), Expect(2) = 4e-43
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           ++VDRLTK AHFLP+K+T    ++  +YV EIV+LHG
Sbjct: 581 IVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 617


>ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508708185|gb|EOY00082.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 1515

 Score =  149 bits (377), Expect(2) = 6e-43
 Identities = 83/199 (41%), Positives = 121/199 (60%), Gaps = 6/199 (3%)
 Frame = -1

Query: 695  VADALSRKSR*S--KIEKA*MY*LVGDFDLGVKKAKNE--VLLSTMDCILDIVQQIRDGR 528
            VADALSRKS  S   ++      L+    LGV+    E   LL+       ++ QI+D +
Sbjct: 981  VADALSRKSSSSLAALQSCYFPALIEMKSLGVQLRNGEDGSLLANFIVRPSLLNQIKDIQ 1040

Query: 527  DKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALH 348
              DDE  K I  L +G +  +++   +  L F++++CVP   +LR+ I +EA  + YALH
Sbjct: 1041 RSDDELRKEIQKLTDGGV-SEFRFGEDNVLMFKDRVCVPEGNQLRQAIMEEAHSSAYALH 1099

Query: 347  PGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNV 168
            PG  KMY  ++++YWW GMK+DV +++++CL CQQVKAEH+R    LQ L +PE KW++V
Sbjct: 1100 PGSTKMYRTIRENYWWPGMKRDVAEFIAKCLVCQQVKAEHQRLVDTLQSLPVPEWKWEHV 1159

Query: 167  AMDFVGALPRNQ--KREIW 117
             MDF+  LPR Q  K  IW
Sbjct: 1160 TMDFILGLPRTQRGKDAIW 1178



 Score = 51.6 bits (122), Expect(2) = 6e-43
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = -3

Query: 126  RNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
            ++ + VIVDRLTK AHFL + ST  + K  +LY+ EIV+LHG
Sbjct: 1174 KDAIWVIVDRLTKSAHFLAVHSTYSIEKLAQLYIDEIVRLHG 1215


>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
          Length = 655

 Score =  145 bits (366), Expect(2) = 1e-42
 Identities = 76/202 (37%), Positives = 122/202 (60%), Gaps = 9/202 (4%)
 Frame = -1

Query: 695 VADALSRKS----R*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGR 528
           VADALSR+S          +  ++    D  L V+ A   +    +     +++ I + +
Sbjct: 224 VADALSRRSVSVSSLIMARQQELWEAFRDLHLNVEFAPGILKFGMIKISSGLLEDIANSQ 283

Query: 527 DKDDEYVKMISDLRNGIIMD---DWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKY 357
           D       +I + RN I+     ++KI ++  LR   ++CVP    +R+ I +EA ++K 
Sbjct: 284 DD-----VLIQEKRNLIVQGKTTEFKIGADNVLRCNGRICVPEITAMRKTILEEAHKSKL 338

Query: 356 ALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKW 177
           ++HPG  KMY +L+++YWW GMKK V +YVS CLTCQ+ K EH+RP+G+LQPL+IPE KW
Sbjct: 339 SIHPGATKMYQDLRQNYWWPGMKKHVAEYVSTCLTCQKAKVEHQRPAGMLQPLDIPEWKW 398

Query: 176 DNVAMDFVGALPRNQKR--EIW 117
           D+++MDF+  LP+ +++   IW
Sbjct: 399 DSISMDFITGLPKTRRKNDSIW 420



 Score = 54.7 bits (130), Expect(2) = 1e-42
 Identities = 24/43 (55%), Positives = 34/43 (79%)
 Frame = -3

Query: 129 KRNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           K + + VIVDRLTK AHFLP+++T  V++  E+Y+ EIV+LHG
Sbjct: 415 KNDSIWVIVDRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLHG 457


>ref|XP_007221234.1| hypothetical protein PRUPE_ppb019121mg [Prunus persica]
           gi|462417788|gb|EMJ22433.1| hypothetical protein
           PRUPE_ppb019121mg [Prunus persica]
          Length = 552

 Score =  147 bits (371), Expect(2) = 2e-42
 Identities = 83/199 (41%), Positives = 117/199 (58%), Gaps = 6/199 (3%)
 Frame = -1

Query: 695 VADALSRKSR*SKIEKA*MY*LV----GDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGR 528
           VADALSRKS  S       Y  +        +G+       LL+T+     +V++I   +
Sbjct: 27  VADALSRKSSGSIAYLRGRYLPLMVEMRKLRVGLHVDNQGALLATLHVRPVLVERILAAQ 86

Query: 527 DKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALH 348
            +D     +  ++ NG    D  + ++G L   N+L VPND  L+R I +EA ++ +A+H
Sbjct: 87  SQDPLICTLRVEVANGD-RTDCSVRNDGALMVGNRLYVPNDEALKREILEEAHESAFAMH 145

Query: 347 PGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNV 168
           PG  KMY  L++HYWW  MKK++ +YV RCL CQQVKAE ++PSGLLQPL IPE KW+ +
Sbjct: 146 PGSTKMYHTLREHYWWPFMKKEIAEYVRRCLICQQVKAERQKPSGLLQPLPIPEWKWERI 205

Query: 167 AMDFVGALPRNQKRE--IW 117
            MDFV  LPR Q +   +W
Sbjct: 206 TMDFVFKLPRTQSKHDGVW 224



 Score = 52.4 bits (124), Expect(2) = 2e-42
 Identities = 23/43 (53%), Positives = 33/43 (76%)
 Frame = -3

Query: 129 KRNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           K + V VIVDRLTK AHFLP+++   +NK  ++++ EIV+LHG
Sbjct: 219 KHDGVWVIVDRLTKSAHFLPVRANYSLNKLAKIFIDEIVRLHG 261


>ref|XP_007036977.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
            gi|508774222|gb|EOY21478.1| DNA/RNA polymerases
            superfamily protein [Theobroma cacao]
          Length = 878

 Score =  149 bits (375), Expect(2) = 2e-42
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 12/198 (6%)
 Frame = -1

Query: 695  VADALSRKS----------R*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQ 546
            VADALSRKS          R S + +      +GD  + ++ A+   LL+       ++ 
Sbjct: 527  VADALSRKSMGSLAHIFIGRRSLVREIHS---LGDIGVRLEVAETNALLAHFRVRPILMD 583

Query: 545  QIRDGRDKDDEYVKMISDL--RNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEA 372
            +I++ + KD+  +K + D   R G +       ++G LR+  +L VP+   LRR I +EA
Sbjct: 584  RIKEAQSKDEFVIKALEDPQGRKGKMFTK---GTDGVLRYGTRLYVPDGDGLRREILEEA 640

Query: 371  RQTKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEI 192
                Y +HPG  KMY +LK+ YWW G+K+DV ++VS+CL CQQVKAEH++P+GLLQPL +
Sbjct: 641  HMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPV 700

Query: 191  PESKWDNVAMDFVGALPR 138
            PE KW+++AMDFV  LPR
Sbjct: 701  PEWKWEHIAMDFVTGLPR 718



 Score = 50.4 bits (119), Expect(2) = 2e-42
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           ++VDRLTK AHFLP+K+T    ++  +YV EIV+LHG
Sbjct: 728 IVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 764


>ref|XP_007010454.1| Uncharacterized protein TCM_044274 [Theobroma cacao]
           gi|508727367|gb|EOY19264.1| Uncharacterized protein
           TCM_044274 [Theobroma cacao]
          Length = 860

 Score =  149 bits (375), Expect(2) = 2e-42
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 12/198 (6%)
 Frame = -1

Query: 695 VADALSRKS----------R*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQ 546
           VADALSRKS          R S + +      +GD  + ++ A+   LL+       ++ 
Sbjct: 361 VADALSRKSMGSLAHISIGRRSLVREIHS---LGDIGVRLEVAETSALLAHFRVRPILMD 417

Query: 545 QIRDGRDKDDEYVKMISDL--RNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEA 372
           +I++ + KD+  +K + D   R G +       ++G LR+  +L VP+   LRR I +EA
Sbjct: 418 KIKEAQSKDEFVIKALEDPQGRKGKMFTK---GTDGVLRYGTRLYVPDGDGLRREILEEA 474

Query: 371 RQTKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEI 192
               Y +HPG  KMY +LK+ YWW G+K+DV ++VS+CL CQQVKAEH++P+GLLQPL +
Sbjct: 475 HMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPV 534

Query: 191 PESKWDNVAMDFVGALPR 138
           PE KW+++AMDFV  LPR
Sbjct: 535 PEWKWEHIAMDFVTGLPR 552



 Score = 50.4 bits (119), Expect(2) = 2e-42
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           ++VDRLTK AHFLP+K+T    ++  +YV EIV+LHG
Sbjct: 562 IVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 598


>ref|XP_007099710.1| Retrotransposon protein, Ty3-gypsy subclass, putative [Theobroma
           cacao] gi|508728428|gb|EOY20325.1| Retrotransposon
           protein, Ty3-gypsy subclass, putative [Theobroma cacao]
          Length = 460

 Score =  149 bits (375), Expect(2) = 2e-42
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 12/198 (6%)
 Frame = -1

Query: 695 VADALSRKS----------R*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQ 546
           VADALSRKS          R S + +      +GD  + ++ A+   LL+       ++ 
Sbjct: 113 VADALSRKSMGSLAHISIGRRSLVREIHS---LGDIGVRLEVAETNALLAHFRVRPILMD 169

Query: 545 QIRDGRDKDDEYVKMISDL--RNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEA 372
           +I++ + KD+  +K + D   R G +       ++G LR+  +L VP+   LRR I +EA
Sbjct: 170 RIKEAQSKDEFVIKALEDPQGRKGKMFTK---GTDGVLRYGTRLYVPDGDGLRREILEEA 226

Query: 371 RQTKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEI 192
               Y +HPG  KMY +LK+ YWW G+K+DV ++VS+CL CQQVKAEH++P+GLLQPL +
Sbjct: 227 HMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPV 286

Query: 191 PESKWDNVAMDFVGALPR 138
           PE KW+++AMDFV  LPR
Sbjct: 287 PEWKWEHIAMDFVTGLPR 304



 Score = 50.4 bits (119), Expect(2) = 2e-42
 Identities = 21/37 (56%), Positives = 29/37 (78%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           ++VDRLTK AHFLP+K+T    ++  +YV EIV+LHG
Sbjct: 314 IVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHG 350


>ref|XP_007023829.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508779195|gb|EOY26451.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 679

 Score =  150 bits (378), Expect(2) = 5e-42
 Identities = 82/196 (41%), Positives = 121/196 (61%), Gaps = 10/196 (5%)
 Frame = -1

Query: 695 VADALSRKS----------R*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQ 546
           VADALSRKS          R S + +      +GD  + ++ A+   LL+       ++ 
Sbjct: 150 VADALSRKSMGSLAHISIGRRSLVREIHS---LGDIGVRLEVAETNALLAHFRVRPILMD 206

Query: 545 QIRDGRDKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQ 366
           +I++ + KD+  +K + D R G     +   ++G LR+  +L VP+   LRR I +EA  
Sbjct: 207 RIKEAQSKDEFVIKALEDPR-GRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHM 265

Query: 365 TKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPE 186
             Y +HPG  KMY +LK+ YWW G+K+DV ++VS+CL CQQVKAEH++P+GLLQPL +PE
Sbjct: 266 AAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPE 325

Query: 185 SKWDNVAMDFVGALPR 138
            KW+++AMDFV  LPR
Sbjct: 326 WKWEHIAMDFVTGLPR 341



 Score = 48.1 bits (113), Expect(2) = 5e-42
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           ++VD+LTK AHFLP+K+T     +  +YV EIV+LHG
Sbjct: 351 IVVDQLTKSAHFLPVKTTYGAAHYARVYVDEIVRLHG 387


>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
          Length = 1604

 Score =  153 bits (386), Expect(2) = 1e-41
 Identities = 79/193 (40%), Positives = 129/193 (66%), Gaps = 5/193 (2%)
 Frame = -1

Query: 695  VADALSRKSR*SKIEKA*M-Y*LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGRDKD 519
            VADALSRKS+ + +    M Y L  +FD       N     T++    + ++I++ +  D
Sbjct: 1079 VADALSRKSQVNLMVARPMPYELAKEFDRLSLGFLNNSRGVTVELEPTLEREIKEAQKND 1138

Query: 518  DEYVKMISDLRNGIIMD----DWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYAL 351
            ++    IS++R  +I+D    D++ D+EG + F+++LCVPN   +R +I  EA +T Y++
Sbjct: 1139 EK----ISEIRR-LILDGRGKDFREDAEGVVWFKDRLCVPNVQSIRELILKEAHETAYSI 1193

Query: 350  HPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDN 171
            HPG +KMY +LKK +WW GMK+++ ++V+ C +C+++KAEH+RP+GLLQPL+IP+ KWD 
Sbjct: 1194 HPGSEKMYQDLKKKFWWYGMKREIAEHVAMCDSCRRIKAEHQRPAGLLQPLQIPQWKWDE 1253

Query: 170  VAMDFVGALPRNQ 132
            + MDF+  LPR +
Sbjct: 1254 IGMDFIVGLPRTR 1266



 Score = 43.5 bits (101), Expect(2) = 1e-41
 Identities = 20/37 (54%), Positives = 25/37 (67%)
 Frame = -3

Query: 111  VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
            V+VDRLTK AHF+P+K+        ELY+  IV LHG
Sbjct: 1274 VVVDRLTKSAHFIPVKTNYNSAVLAELYMSRIVCLHG 1310


>gb|ADB85337.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1053

 Score =  143 bits (361), Expect(2) = 1e-41
 Identities = 74/192 (38%), Positives = 121/192 (63%), Gaps = 4/192 (2%)
 Frame = -1

Query: 695  VADALSRKSR*SKI----EKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGR 528
            VADALSRK+  + I     +  +Y  +   +L +    N+  ++ ++    +  QIR+ +
Sbjct: 528  VADALSRKAYCNTILVQKNQPELYEELKHLNLEIV---NQGCVNALEVQPTLQSQIREKQ 584

Query: 527  DKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALH 348
             +D++  ++  ++R G     +  D +G + F N++CVPN  EL++ I  EA ++ Y++H
Sbjct: 585  LEDEDIKEIKKNMRRGKA-PGFSEDEQGTVWFGNRICVPNQQELKQSILKEAHESPYSIH 643

Query: 347  PGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNV 168
            PG  KMY +LK+ YWW  MK+++ ++V+ C  CQ+VKAEH+RP+GLLQPL IPE KW+ +
Sbjct: 644  PGSTKMYQDLKEKYWWVSMKREIAEFVAHCDICQRVKAEHQRPAGLLQPLPIPEWKWEEI 703

Query: 167  AMDFVGALPRNQ 132
             MDF+  LPR Q
Sbjct: 704  GMDFITGLPRTQ 715



 Score = 53.1 bits (126), Expect(2) = 1e-41
 Identities = 24/37 (64%), Positives = 30/37 (81%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           VI+DRLTKVAHF+P+K+T   +K  ELYV +IV LHG
Sbjct: 723 VIIDRLTKVAHFIPVKTTYQSSKLAELYVAKIVCLHG 759


>emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa Japonica Group]
          Length = 1092

 Score =  146 bits (368), Expect(2) = 2e-41
 Identities = 65/167 (38%), Positives = 111/167 (66%)
 Frame = -1

Query: 632  LVGDFDLGVKKAKNEVLLSTMDCILDIVQQIRDGRDKDDEYVKMISDLRNGIIMDDWKID 453
            L+ D+D+G+    +   L+T++    ++ QIR+ +  D +   ++ +++ G     +  D
Sbjct: 582  LIKDYDVGIHYHPDG-FLATLEAKPTLLDQIREAQKNDPDMYGLLKNMKQGKAAG-FTED 639

Query: 452  SEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALHPGGDKMYWNLKKHYWWRGMKKDVPD 273
              G L   N++CVP++ EL+++I  EA ++ Y++HPG  KMY +LK+ YWW  MK+++ +
Sbjct: 640  EHGTLWNGNRVCVPDNRELKQMILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAE 699

Query: 272  YVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNVAMDFVGALPRNQ 132
            +V+ C  CQ+VKAEH+RP+GLLQPL++PE KWD + MDF+  LP+ Q
Sbjct: 700  FVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQ 746



 Score = 50.1 bits (118), Expect(2) = 2e-41
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           V+VDRLTKVA F+P+K+T   NK  ELY   IV LHG
Sbjct: 754 VVVDRLTKVARFIPVKTTYRGNKLAELYFARIVSLHG 790


>ref|XP_007049932.1| Uncharacterized protein TCM_003206 [Theobroma cacao]
           gi|508702193|gb|EOX94089.1| Uncharacterized protein
           TCM_003206 [Theobroma cacao]
          Length = 694

 Score =  144 bits (363), Expect(2) = 2e-41
 Identities = 68/148 (45%), Positives = 102/148 (68%), Gaps = 2/148 (1%)
 Frame = -1

Query: 554 IVQQIRDGRDKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDE 375
           ++ QI+D +  DDE +K I  L +G +  +++   +  L F++++CVP   +LR+ I +E
Sbjct: 456 LLNQIKDIQRSDDE-LKEIQKLTDGGV-SEFRFGEDNVLMFKDRVCVPEGNQLRQAIMEE 513

Query: 374 ARQTKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLE 195
           A  + YALH G  KMY  ++++YWW GMK+DV ++V++C+ CQQVKAEH+RP+G LQ L 
Sbjct: 514 AHSSAYALHSGSTKMYRTIRENYWWPGMKRDVAEFVAKCVVCQQVKAEHQRPAGTLQSLP 573

Query: 194 IPESKWDNVAMDFVGALPRNQ--KREIW 117
           +PE KW++V MDFV  LPR Q  K  IW
Sbjct: 574 VPEWKWEHVTMDFVLGLPRTQRGKDAIW 601



 Score = 52.0 bits (123), Expect(2) = 2e-41
 Identities = 23/42 (54%), Positives = 31/42 (73%)
 Frame = -3

Query: 126 RNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           ++ + VIVDRLTK AHFL + ST  + K  +LY+ EIV+LHG
Sbjct: 597 KDAIWVIVDRLTKFAHFLAVHSTYSIEKLAQLYIDEIVRLHG 638


>ref|XP_007028176.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508716781|gb|EOY08678.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 666

 Score =  149 bits (375), Expect(2) = 2e-41
 Identities = 82/198 (41%), Positives = 121/198 (61%), Gaps = 12/198 (6%)
 Frame = -1

Query: 695 VADALSRKS----------R*SKIEKA*MY*LVGDFDLGVKKAKNEVLLSTMDCILDIVQ 546
           VADALSRKS          R S + +      +GD  + ++ A+   LL+       ++ 
Sbjct: 244 VADALSRKSMGSLAHISIGRRSLVREIHS---LGDIGVRLEVAETNALLAHFRVRPILMD 300

Query: 545 QIRDGRDKDDEYVKMISDL--RNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIFDEA 372
           +I++ + KD+  +K + D   R G +       ++G LR+  +L VP+   LRR I +EA
Sbjct: 301 KIKEAQSKDEFVIKALEDPQGRKGKMFTK---GTDGVLRYGTRLYVPDGDGLRRKILEEA 357

Query: 371 RQTKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEI 192
               Y +HPG  KMY +LK+ YWW G+K+DV ++VS+CL CQQVKAEH++P+GLLQPL +
Sbjct: 358 HMAAYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPV 417

Query: 191 PESKWDNVAMDFVGALPR 138
           PE KW+++AMDFV  LPR
Sbjct: 418 PEWKWEHIAMDFVTGLPR 435



 Score = 47.4 bits (111), Expect(2) = 2e-41
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = -3

Query: 111 VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           ++VDRLTK AHFL +K+T    ++  +YV EIV+LHG
Sbjct: 445 IVVDRLTKSAHFLSVKTTYGAAQYARVYVDEIVRLHG 481


>gb|AAX92776.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
            Japonica Group] gi|77550523|gb|ABA93320.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1429

 Score =  145 bits (367), Expect(2) = 2e-41
 Identities = 75/203 (36%), Positives = 119/203 (58%), Gaps = 15/203 (7%)
 Frame = -1

Query: 695  VADALSRKSR*SKIEKA*MY*LVGDFDLGVKKAKNEV---------------LLSTMDCI 561
            VADALSRKSR +               LG++    E+                L+T++  
Sbjct: 897  VADALSRKSRCN--------------TLGIRDIPPELNQQMEALNLSIVSRGFLATLEAK 942

Query: 560  LDIVQQIRDGRDKDDEYVKMISDLRNGIIMDDWKIDSEGFLRFRNKLCVPNDAELRRVIF 381
              ++ QIR+ +  D +   ++ +++ G     +  D  G L   N++CVP+D EL+++I 
Sbjct: 943  PTLLDQIREAQKNDPDMHGILKNMKQGKAA-GFTEDEHGTLWNGNRVCVPDDKELKQLIL 1001

Query: 380  DEARQTKYALHPGGDKMYWNLKKHYWWRGMKKDVPDYVSRCLTCQQVKAEHKRPSGLLQP 201
             EA ++ Y++HPG  KMY +LK+ YWW  MK+++ ++V+ C  CQ+VKAEH+RP+GLLQP
Sbjct: 1002 QEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQP 1061

Query: 200  LEIPESKWDNVAMDFVGALPRNQ 132
            L++PE KWD + MDF+  LP+ Q
Sbjct: 1062 LQVPECKWDEIGMDFITGLPKTQ 1084



 Score = 50.1 bits (118), Expect(2) = 2e-41
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = -3

Query: 111  VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
            V+VDRLTKVA F+P+K+T   NK  ELY   IV LHG
Sbjct: 1092 VVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHG 1128


>gb|AAP43918.1| integrase [Gossypium hirsutum]
          Length = 350

 Score =  143 bits (360), Expect(2) = 2e-41
 Identities = 64/119 (53%), Positives = 86/119 (72%), Gaps = 2/119 (1%)
 Frame = -1

Query: 467 DWKIDSEGFLRFRNKLCVPNDAELRRVIFDEARQTKYALHPGGDKMYWNLKKHYWWRGMK 288
           D++I S+G L F+N++CVP + EL + I  EA  +  A+HPG  KMY +LKK YWW GMK
Sbjct: 158 DFRIGSDGCLMFKNQICVPKNDELIQNILHEAHNSCLAVHPGSTKMYNDLKKMYWWSGMK 217

Query: 287 KDVPDYVSRCLTCQQVKAEHKRPSGLLQPLEIPESKWDNVAMDFVGALP--RNQKREIW 117
           +D+ ++VS+CL CQQVKAEH+ PSGLLQP+ +PE KWD + MDF+  LP    +K  IW
Sbjct: 218 RDISEFVSKCLVCQQVKAEHQVPSGLLQPIMVPEWKWDRITMDFISGLPLTPGKKNAIW 276



 Score = 52.8 bits (125), Expect(2) = 2e-41
 Identities = 23/43 (53%), Positives = 32/43 (74%)
 Frame = -3

Query: 129 KRNMV*VIVDRLTKVAHFLPIKSTVPVNKFGELYVKEIVKLHG 1
           K+N +  IVDRLTK AHF+P+ +   +NK  ELY++EI +LHG
Sbjct: 271 KKNAIWAIVDRLTKSAHFIPVCTDYSLNKLVELYIREIFRLHG 313