BLASTX nr result
ID: Cocculus23_contig00045545
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Cocculus23_contig00045545 (325 letters) Database: ./nr 38,876,450 sequences; 13,856,398,315 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus] 188 8e-46 gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira] 182 6e-44 gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense] 176 2e-42 gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata] 164 2e-38 gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata] 162 5e-38 ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestic... 162 6e-38 gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia am... 161 8e-38 gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata] 160 2e-37 ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucife... 160 2e-37 gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera] 160 2e-37 ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) ... 159 4e-37 gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides] 159 4e-37 gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra] 159 4e-37 gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liqu... 159 5e-37 gb|ABQ15071.1| RNA polymerase beta' subunit [Liquidambar styraci... 159 5e-37 gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simpliciss... 159 5e-37 gb|ABD93823.1| RNA polymerase beta chain [Galbulimima belgraveana] 159 5e-37 ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [... 158 7e-37 ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) ... 158 7e-37 gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense] 158 7e-37 >gb|ABD93727.1| RNA polymerase beta chain [Cocculus trilobus] Length = 865 Score = 188 bits (477), Expect = 8e-46 Identities = 91/108 (84%), Positives = 92/108 (85%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 LKIRNSLGPLGIVPK FYSFYHLIT+NQI QAFQVLKYSLLDENGRI Sbjct: 527 LKIRNSLGPLGIVPKNYEFYSFYHLITHNQILLNKYLLLDNLKQAFQVLKYSLLDENGRI 586 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSL QFICENLCISKN Sbjct: 587 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLGQFICENLCISKN 634 >gb|ABD93851.1| RNA polymerase beta chain [Cissampelos pareira] Length = 774 Score = 182 bits (461), Expect = 6e-44 Identities = 90/110 (81%), Positives = 92/110 (83%), Gaps = 2/110 (1%) Frame = +1 Query: 1 LKIRNSLGPLGIVPK--ITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENG 174 LKI NSLGPLGIVPK ITNFYSFYHLIT+NQI Q FQVLKYSLLDENG Sbjct: 439 LKIMNSLGPLGIVPKMKITNFYSFYHLITHNQILVNKYLLLDNLKQTFQVLKYSLLDENG 498 Query: 175 RIYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 RIYN DPNSNMILNLFHLNW+FLHHDYCEETSTIVSL QFICENLCISKN Sbjct: 499 RIYNTDPNSNMILNLFHLNWHFLHHDYCEETSTIVSLGQFICENLCISKN 548 >gb|AEM44893.1| RNA polymerase beta chain [Menispermum canadense] Length = 294 Score = 176 bits (447), Expect = 2e-42 Identities = 86/108 (79%), Positives = 88/108 (81%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 L IRNSLGPLGIVPKITNFYSFYHLIT+NQ Q FQVLKY LLDENGRI Sbjct: 142 LTIRNSLGPLGIVPKITNFYSFYHLITHNQSLVNKYLLLDNLKQTFQVLKYFLLDENGRI 201 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 YNPDP SNMILN F+LNWYFLHHDYCEE STIVSL QFICENLCISKN Sbjct: 202 YNPDPYSNMILNPFNLNWYFLHHDYCEEISTIVSLGQFICENLCISKN 249 >gb|ABD93728.1| RNA polymerase beta chain [Akebia quinata] Length = 861 Score = 164 bits (414), Expect = 2e-38 Identities = 77/107 (71%), Positives = 85/107 (79%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 L IRNSLGPLGIVPKITNFYSFYHLIT+NQI FQVLKY +DENGRI Sbjct: 523 LPIRNSLGPLGIVPKITNFYSFYHLITHNQILVNKYLLLDNLKHTFQVLKYYFMDENGRI 582 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISK 321 YNPD SN+ILN F+LNWYF+HHDYCEETS I++L QFICEN+CISK Sbjct: 583 YNPDSCSNIILNPFNLNWYFVHHDYCEETSAIINLGQFICENVCISK 629 >gb|ABD93771.1| RNA polymerase beta chain [Lardizabala biternata] Length = 861 Score = 162 bits (410), Expect = 5e-38 Identities = 77/107 (71%), Positives = 85/107 (79%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 L IRNSLGPLGI PKITNFYSFYHLIT+NQI FQVLKY L+DENGRI Sbjct: 523 LPIRNSLGPLGIGPKITNFYSFYHLITHNQILVNKYLLLDNLKHTFQVLKYYLMDENGRI 582 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISK 321 NPD SN+ILNLF+LNWYF+HHDYCEETS I++L QFICEN+CISK Sbjct: 583 LNPDSCSNIILNLFNLNWYFVHHDYCEETSAIINLGQFICENVCISK 629 >ref|YP_740640.1| RNA polymerase beta'' subunit [Nandina domestica] gi|122165971|sp|Q09FX1.1|RPOC2_NANDO RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' gi|114054460|gb|ABI49853.1| RNA polymerase beta'' subunit [Nandina domestica] Length = 1377 Score = 162 bits (409), Expect = 6e-38 Identities = 78/107 (72%), Positives = 84/107 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 L IRNSLGPLGIVPKI NF SFY+LIT+NQI Q FQ LKY L+DENGRI Sbjct: 964 LLIRNSLGPLGIVPKIANFSSFYYLITHNQILINKYLLLDNLKQTFQKLKYYLMDENGRI 1023 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISK 321 YNPDP SNMILN F+ NWYFLHHDYCEETSTI+SL QF CEN+CISK Sbjct: 1024 YNPDPCSNMILNPFNWNWYFLHHDYCEETSTIISLGQFFCENVCISK 1070 >gb|ADD31160.1| RNA polymerase beta'' subunit protein [Ximenia americana] Length = 1391 Score = 161 bits (408), Expect = 8e-38 Identities = 75/108 (69%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 +KIRNSLGPLGI +I NFYSFYHLIT+NQ Q QV KY L+DENG+I Sbjct: 982 IKIRNSLGPLGIALQIANFYSFYHLITHNQTLVTNYFQLDNLKQTSQVFKYFLMDENGKI 1041 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 YNPDP SN+ILN FHLNWYFLHH+YCEETSTI+SL QFICEN+CI+KN Sbjct: 1042 YNPDPCSNIILNPFHLNWYFLHHNYCEETSTIISLGQFICENVCIAKN 1089 >gb|ABD93724.1| RNA polymerase beta chain [Sargentodoxa cuneata] Length = 861 Score = 160 bits (405), Expect = 2e-37 Identities = 76/107 (71%), Positives = 84/107 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 L IRNSLGPLGIVPKI NFYSFYHLIT+NQI Q FQVLKY L+DEN +I Sbjct: 523 LPIRNSLGPLGIVPKIANFYSFYHLITHNQILINKYFLLDNLKQTFQVLKYYLMDENEKI 582 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISK 321 NPDP SN+ILN F LNWYF+HHDYCEETS I++L QFICEN+CISK Sbjct: 583 LNPDPCSNIILNPFDLNWYFVHHDYCEETSAIINLGQFICENVCISK 629 >ref|YP_004564093.1| RNA polymerase beta' subunit [Nelumbo nucifera] gi|224474212|gb|ACN49398.1| RNA polymerase beta' subunit [Nelumbo nucifera] gi|290489544|gb|ADD31156.1| RNA polymerase beta'' subunit protein [Nelumbo nucifera] gi|383286787|gb|AFH01437.1| RNA polymerase beta'' subunit (chloroplast) [Nelumbo nucifera] gi|519666902|gb|AGO98514.1| RNA polymerase beta' subunit (chloroplast) [Nelumbo nucifera] Length = 1390 Score = 160 bits (404), Expect = 2e-37 Identities = 75/109 (68%), Positives = 86/109 (78%), Gaps = 1/109 (0%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYS-FYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGR 177 + IRNS GPLG VPKI NFYS +YHLIT+NQI Q FQVLKY L+DENGR Sbjct: 976 ISIRNSFGPLGTVPKIANFYSSYYHLITHNQILINKYLLLDNLKQTFQVLKYYLIDENGR 1035 Query: 178 IYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 I+NPDP SN+I N F+LNWYFLHHDYCEE+STI+SL QF+CEN+CISKN Sbjct: 1036 IFNPDPCSNIIFNPFNLNWYFLHHDYCEESSTIISLGQFLCENVCISKN 1084 >gb|ABD93723.1| RNA polymerase beta chain [Nelumbo nucifera] Length = 866 Score = 160 bits (404), Expect = 2e-37 Identities = 75/109 (68%), Positives = 86/109 (78%), Gaps = 1/109 (0%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYS-FYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGR 177 + IRNS GPLG VPKI NFYS +YHLIT+NQI Q FQVLKY L+DENGR Sbjct: 527 ISIRNSFGPLGTVPKIANFYSSYYHLITHNQILINKYLLLDNLKQTFQVLKYYLIDENGR 586 Query: 178 IYNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 I+NPDP SN+I N F+LNWYFLHHDYCEE+STI+SL QF+CEN+CISKN Sbjct: 587 IFNPDPCSNIIFNPFNLNWYFLHHDYCEESSTIISLGQFLCENVCISKN 635 >ref|YP_008081447.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron aralioides] gi|157690196|gb|ABV65785.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron aralioides] gi|479279286|gb|AGJ72139.1| RNA polymerase beta'' subunit (chloroplast) [Trochodendron aralioides] Length = 1381 Score = 159 bits (402), Expect = 4e-37 Identities = 73/108 (67%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IR SLGPLG V KI NFYSFYHLIT+NQI Q FQ++KY L+DENGRI Sbjct: 976 IPIRKSLGPLGTVHKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQIIKYYLMDENGRI 1035 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 ++PDP SN+ILN FHLNWYFLHHDY E+TSTI+SL QF+CEN+CISKN Sbjct: 1036 FHPDPCSNIILNPFHLNWYFLHHDYSEDTSTIISLGQFLCENICISKN 1083 >gb|ABD93717.1| RNA polymerase beta chain [Trochodendron aralioides] Length = 865 Score = 159 bits (402), Expect = 4e-37 Identities = 73/108 (67%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IR SLGPLG V KI NFYSFYHLIT+NQI Q FQ++KY L+DENGRI Sbjct: 527 IPIRKSLGPLGTVHKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQIIKYYLMDENGRI 586 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 ++PDP SN+ILN FHLNWYFLHHDY E+TSTI+SL QF+CEN+CISKN Sbjct: 587 FHPDPCSNIILNPFHLNWYFLHHDYSEDTSTIISLGQFLCENICISKN 634 >gb|ABD93729.1| RNA polymerase beta chain [Euptelea polyandra] Length = 796 Score = 159 bits (402), Expect = 4e-37 Identities = 76/108 (70%), Positives = 84/108 (77%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IRNS+GPLGIVPKI NFYS HLIT+NQI Q F VLKY L+DENGRI Sbjct: 527 IPIRNSMGPLGIVPKIANFYSSSHLITHNQILVNKYLLLDNLKQTFHVLKYYLMDENGRI 586 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 YNPDP SNMILN F+LNW FLHHDYCEETS I+SL QFICEN+CISK+ Sbjct: 587 YNPDPYSNMILNPFNLNWSFLHHDYCEETSIIISLGQFICENVCISKH 634 >gb|ABV65753.1| RNA polymerase beta'' subunit (chloroplast) [Liquidambar styraciflua] Length = 1390 Score = 159 bits (401), Expect = 5e-37 Identities = 74/108 (68%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IRNSLGPLG +I NFYSFYHLIT+N+I Q FQVL Y L+DENGRI Sbjct: 977 IPIRNSLGPLGTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRI 1036 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 YNPDP SN+ILN F+LNWYFLHH+YCEETSTI+SL QFICEN+CI+KN Sbjct: 1037 YNPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKN 1084 >gb|ABQ15071.1| RNA polymerase beta' subunit [Liquidambar styraciflua] Length = 830 Score = 159 bits (401), Expect = 5e-37 Identities = 74/108 (68%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IRNSLGPLG +I NFYSFYHLIT+N+I Q FQVL Y L+DENGRI Sbjct: 510 IPIRNSLGPLGTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRI 569 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 YNPDP SN+ILN F+LNWYFLHH+YCEETSTI+SL QFICEN+CI+KN Sbjct: 570 YNPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFICENVCIAKN 617 >gb|ABD93725.1| RNA polymerase beta chain [Xanthorhiza simplicissima] Length = 861 Score = 159 bits (401), Expect = 5e-37 Identities = 77/107 (71%), Positives = 84/107 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 L IRNSLGPLGIVPKI N +SFY+LIT+NQI + FQVLKY L+DENGRI Sbjct: 523 LPIRNSLGPLGIVPKIANCFSFYYLITHNQILVNKYSLLDNFKETFQVLKYYLMDENGRI 582 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISK 321 YNPDP SNMILN F+ NWYFLHHDYCEETSTI+SL QF CENL ISK Sbjct: 583 YNPDPCSNMILNPFNWNWYFLHHDYCEETSTIISLGQFFCENLRISK 629 >gb|ABD93823.1| RNA polymerase beta chain [Galbulimima belgraveana] Length = 811 Score = 159 bits (401), Expect = 5e-37 Identities = 76/107 (71%), Positives = 82/107 (76%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IRNSLGPLG VPKI NFYS YHLIT+NQI Q FQVLKY L+DENGRI Sbjct: 481 IPIRNSLGPLGTVPKIANFYSSYHLITHNQILLNKYLLLDNLKQTFQVLKYYLMDENGRI 540 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISK 321 YNPDP SN+ILN F LNW FL HDYCEET TI+SL QFICEN+CISK Sbjct: 541 YNPDPRSNIILNPFDLNWCFLRHDYCEETPTIISLGQFICENVCISK 587 >ref|YP_008963681.1| RNA polymerase beta' subunit (chloroplast) [Liquidambar formosana] gi|491650361|gb|AGL13421.1| RNA polymerase beta' subunit (chloroplast) [Liquidambar formosana] Length = 1390 Score = 158 bits (400), Expect = 7e-37 Identities = 73/108 (67%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IRNSLGPLG +I NFYSFYHLIT+N+I Q FQVL Y L+DENGRI Sbjct: 977 IPIRNSLGPLGTALQIANFYSFYHLITHNKILVTKYLQLDNLKQTFQVLNYYLMDENGRI 1036 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 YNPDP SN+ILN F+LNWYFLHH+YCEETSTI+SL QF+CEN+CI+KN Sbjct: 1037 YNPDPCSNIILNPFNLNWYFLHHNYCEETSTIISLGQFVCENVCIAKN 1084 >ref|YP_008081355.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense] gi|479279193|gb|AGJ72047.1| RNA polymerase beta'' subunit (chloroplast) [Tetracentron sinense] Length = 1378 Score = 158 bits (400), Expect = 7e-37 Identities = 73/108 (67%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IR SLGPLGIVPKI NFYSFYHLIT+NQI Q FQV+KY +DENGRI Sbjct: 973 IPIRKSLGPLGIVPKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQVIKYYFMDENGRI 1032 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 ++PDP SN+ILN FHLNWYFLHHD E+T+TI+SL QF+CEN+CISKN Sbjct: 1033 FHPDPCSNIILNPFHLNWYFLHHDSYEDTATIISLGQFLCENICISKN 1080 >gb|ABD93718.1| RNA polymerase beta chain [Tetracentron sinense] Length = 792 Score = 158 bits (400), Expect = 7e-37 Identities = 73/108 (67%), Positives = 85/108 (78%) Frame = +1 Query: 1 LKIRNSLGPLGIVPKITNFYSFYHLITYNQIXXXXXXXXXXXXQAFQVLKYSLLDENGRI 180 + IR SLGPLGIVPKI NFYSFYHLIT+NQI Q FQV+KY +DENGRI Sbjct: 454 IPIRKSLGPLGIVPKIANFYSFYHLITHNQILVNKYLLLDNLKQTFQVIKYYFMDENGRI 513 Query: 181 YNPDPNSNMILNLFHLNWYFLHHDYCEETSTIVSLRQFICENLCISKN 324 ++PDP SN+ILN FHLNWYFLHHD E+T+TI+SL QF+CEN+CISKN Sbjct: 514 FHPDPCSNIILNPFHLNWYFLHHDSYEDTATIISLGQFLCENICISKN 561