BLASTX nr result
ID: Cocculus23_contig00045497
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00045497
(392 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFB73911.1| polyprotein [Citrus sinensis] 65 8e-17
gb|AFB73912.1| polyprotein [Citrus sinensis] 64 1e-16
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 55 2e-11
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 55 4e-10
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 52 3e-09
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 52 2e-08
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 52 3e-08
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 52 3e-08
ref|XP_006489812.1| PREDICTED: UPF0481 protein At3g47200-like [C... 45 4e-08
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 64.7 bits (156), Expect(2) = 8e-17
Identities = 30/49 (61%), Positives = 40/49 (81%)
Frame = +3
Query: 246 VANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELVPV 392
VA CLL EDG+ STF+E ++S + AL MT +Q+EIEAL++NK WELVP+
Sbjct: 781 VAYCLLTEDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPL 829
Score = 47.8 bits (112), Expect(2) = 8e-17
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +2
Query: 5 HKVIVSGNVT------EKGDAMIALLKKWQKPQNIQVQNKPEQENSSEATPEHDEQETEE 166
HK+++S +V ++ D +K+ + + V+N PE +SSEA PEH+EQE E
Sbjct: 694 HKIVISRDVIFVEDQLQRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQEPVE 753
Query: 167 VEASTVRQTLVRR 205
EA VR++ R
Sbjct: 754 SEAPEVRRSTRER 766
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 63.9 bits (154), Expect(2) = 1e-16
Identities = 30/49 (61%), Positives = 40/49 (81%)
Frame = +3
Query: 246 VANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELVPV 392
VA CLL EDG+ STF+E ++S + AL MT +Q+EIEAL++NK WELVP+
Sbjct: 781 VAYCLLTEDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPL 829
Score = 47.8 bits (112), Expect(2) = 1e-16
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Frame = +2
Query: 5 HKVIVSGNVT------EKGDAMIALLKKWQKPQNIQVQNKPEQENSSEATPEHDEQETEE 166
HK+++S +V ++ D +K+ + + V+N PE +SSEA PEH+EQE E
Sbjct: 694 HKIVISRDVIFVEDQLQRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQEPVE 753
Query: 167 VEASTVRQTLVRR 205
EA VR++ R
Sbjct: 754 SEAPEVRRSTRER 766
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 55.1 bits (131), Expect(2) = 2e-11
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +3
Query: 234 MIGVVANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELVPV 392
M G VA CLL EDG+ STF E ++S + + +Q+EIEAL++N W+LVP+
Sbjct: 766 MEGNVAYCLLTEDGEPSTFQEAINSSDVSQWTAAMQEEIEALHKNNTWDLVPL 818
Score = 39.3 bits (90), Expect(2) = 2e-11
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Frame = +2
Query: 5 HKVIVSGNVT------EKGDAMIALLKKWQKPQNIQVQNKPE-QENSSEATPEHDEQETE 163
HKV++S +V ++G+ + K +KP+ Q+Q + E +++SSEA P H+E E E
Sbjct: 684 HKVVISRDVIFVEDRLQRGEVDDSTEK--EKPETTQIQVEEEFEQDSSEAEPAHEEPEPE 741
Query: 164 EVEASTVRQT 193
A T RQ+
Sbjct: 742 SSGAPTTRQS 751
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 55.5 bits (132), Expect(2) = 4e-10
Identities = 26/46 (56%), Positives = 35/46 (76%)
Frame = +3
Query: 249 ANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELV 386
A CLL EDG+ STF+E ++ +A+L M +Q+EIEAL+RN WELV
Sbjct: 778 AYCLLSEDGEPSTFHEAVNGSDASLWMAAMQEEIEALHRNNTWELV 823
Score = 34.3 bits (77), Expect(2) = 4e-10
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 89 IQVQNKPEQENSSEATPEHDEQETEEVEASTVRQT 193
++++ K +ENS EA PEH+EQE EV + R+T
Sbjct: 725 VEIEEKSGEENS-EAEPEHEEQEPNEVNDAEPRRT 758
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 52.4 bits (124), Expect(2) = 3e-09
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +3
Query: 249 ANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELV 386
A CL+ E+G+ STF+E ++ +A+ MT + +E+EAL+RNK WELV
Sbjct: 778 AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELV 823
Score = 34.3 bits (77), Expect(2) = 3e-09
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 89 IQVQNKPEQENSSEATPEHDEQETEEVEASTVRQT 193
+Q++ K ++ +SSEA P H+EQE ++V R T
Sbjct: 725 VQMEEKSKESDSSEAEPVHEEQEPDDVNNGVRRST 759
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 52.0 bits (123), Expect(2) = 2e-08
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +3
Query: 234 MIGVVANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELV 386
M G A CL+ E+G+ STF+E ++ +A+ MT + +E+EAL +NK WELV
Sbjct: 773 MTGHDAYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELV 823
Score = 32.0 bits (71), Expect(2) = 2e-08
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +2
Query: 8 KVIVSGNVTEKGDAMIALLKK---WQKPQNIQVQNKPEQENSSEATPEHDEQETEEVEAS 178
KV+VS +V + + + K +++ +Q++ K ++ +SSEA H+EQE ++V
Sbjct: 695 KVVVSRDVVFAENELQSEQKNDSTFKETAILQIEEKSKESDSSEAESVHEEQEPDDVNNG 754
Query: 179 TVRQT 193
R T
Sbjct: 755 VRRST 759
>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 52.4 bits (124), Expect(2) = 3e-08
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +3
Query: 249 ANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELV 386
A CL+ E+G+ STF+E ++ +A+ MT + +E+EAL+RNK WELV
Sbjct: 778 AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELV 823
Score = 31.2 bits (69), Expect(2) = 3e-08
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 89 IQVQNKPEQENSSEATPEHDEQETEEVEASTVRQT 193
+Q++ K ++ +SSEA H+EQE ++V R T
Sbjct: 725 VQMEEKSKESDSSEAESVHEEQEPDDVNDGVRRST 759
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 52.4 bits (124), Expect(2) = 3e-08
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = +3
Query: 249 ANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEIEALYRNKIWELV 386
A CL+ E+G+ STF+E ++ +A+ MT + +E+EAL+RNK WELV
Sbjct: 778 AYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELV 823
Score = 31.2 bits (69), Expect(2) = 3e-08
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 89 IQVQNKPEQENSSEATPEHDEQETEEVEASTVRQT 193
+Q++ K ++ +SSEA H+EQE ++V R T
Sbjct: 725 VQMEEKSKESDSSEAESVHEEQEPDDVNDGVRRST 759
>ref|XP_006489812.1| PREDICTED: UPF0481 protein At3g47200-like [Citrus sinensis]
Length = 592
Score = 44.7 bits (104), Expect(2) = 4e-08
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Frame = +2
Query: 5 HKVIVSGNVT------EKGDAMIALLKKWQKPQNIQVQNKPEQENSSEATPEHDEQETEE 166
HK+++S +V ++ D +++K+ + ++ V+N PE SSEA PE++EQE E
Sbjct: 38 HKIVISRDVIFIEDQLQRKDEDDSIVKEKSETVSVYVENNPEDSYSSEAAPENEEQEPVE 97
Query: 167 VEASTVRQTLVRR 205
E VR++ R
Sbjct: 98 SEVPEVRRSTRER 110
Score = 38.1 bits (87), Expect(2) = 4e-08
Identities = 17/35 (48%), Positives = 25/35 (71%)
Frame = +3
Query: 246 VANCLLIEDGKLSTFNETMHSQNAAL*MTVVQDEI 350
VA CLL EDG+ STF+E ++S + AL +T + D +
Sbjct: 125 VAYCLLTEDGEPSTFHEALNSSDVALWITAIMDNL 159