BLASTX nr result
ID: Cocculus23_contig00045156
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00045156
(263 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containi... 96 7e-18
ref|XP_007032420.1| Tetratricopeptide repeat (TPR)-like superfam... 86 4e-15
ref|XP_006338491.1| PREDICTED: pentatricopeptide repeat-containi... 85 9e-15
ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containi... 85 9e-15
ref|XP_004232248.1| PREDICTED: pentatricopeptide repeat-containi... 84 2e-14
gb|EYU34118.1| hypothetical protein MIMGU_mgv1a003395mg [Mimulus... 83 4e-14
ref|XP_003601624.1| Pentatricopeptide repeat-containing protein ... 83 5e-14
ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containi... 82 6e-14
ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containi... 82 6e-14
ref|XP_002517447.1| pentatricopeptide repeat-containing protein,... 82 6e-14
ref|NP_198814.1| pentatricopeptide repeat-containing protein [Ar... 81 2e-13
ref|XP_007163838.1| hypothetical protein PHAVU_001G268500g [Phas... 81 2e-13
ref|XP_006405566.1| hypothetical protein EUTSA_v10028245mg [Eutr... 81 2e-13
ref|XP_002870737.1| pentatricopeptide repeat-containing protein ... 81 2e-13
ref|XP_006482520.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13
ref|XP_006431055.1| hypothetical protein CICLE_v10011224mg [Citr... 80 2e-13
ref|XP_004502213.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13
ref|XP_006286056.1| hypothetical protein CARUB_v10007588mg [Caps... 80 3e-13
gb|EXB47690.1| hypothetical protein L484_010474 [Morus notabilis] 79 5e-13
ref|XP_007215021.1| hypothetical protein PRUPE_ppa003340mg [Prun... 78 1e-12
>ref|XP_002276556.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic [Vitis vinifera]
gi|296087770|emb|CBI35026.3| unnamed protein product
[Vitis vinifera]
Length = 675
Score = 95.5 bits (236), Expect = 7e-18
Identities = 44/58 (75%), Positives = 54/58 (93%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
Q ++LDHS++M+EL++SISQTS +QELY+LMSPYK RQLS+RFMVSLLSREPDWQRS
Sbjct: 81 QRVVHLDHSVDMDELLASISQTSNEQELYSLMSPYKGRQLSIRFMVSLLSREPDWQRS 138
>ref|XP_007032420.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao] gi|508711449|gb|EOY03346.1| Tetratricopeptide
repeat (TPR)-like superfamily protein [Theobroma cacao]
Length = 672
Score = 86.3 bits (212), Expect = 4e-15
Identities = 46/87 (52%), Positives = 56/87 (64%)
Frame = -1
Query: 263 SSSSSSYKHVWXXXXXXXXXXXXXXXXXHQNQLYLDHSINMNELMSSISQTSTQQELYAL 84
SSSSS K +W QN +LDHSI+M EL +SIS+T ++L+ L
Sbjct: 53 SSSSSPTKDIWRRSKTAPFYRPKPS----QNSTFLDHSIDMEELFASISKTQNGKDLFTL 108
Query: 83 MSPYKNRQLSLRFMVSLLSREPDWQRS 3
+SPYK RQLS+RFMVSLLSRE DWQRS
Sbjct: 109 LSPYKTRQLSIRFMVSLLSRETDWQRS 135
>ref|XP_006338491.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Solanum tuberosum]
Length = 668
Score = 85.1 bits (209), Expect = 9e-15
Identities = 44/87 (50%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = -1
Query: 260 SSSSSYKHVWXXXXXXXXXXXXXXXXXH-QNQLYLDHSINMNELMSSISQTSTQQELYAL 84
S++SS K VW + Q+ +LDHS++M++L+SSI QT+ + EL+AL
Sbjct: 47 SATSSTKDVWRKTTPPFSPSQHRPYRRNPQSNSFLDHSVDMDDLLSSIGQTTNEHELFAL 106
Query: 83 MSPYKNRQLSLRFMVSLLSREPDWQRS 3
MSPYK R LS+RFMV+LLSRE DWQRS
Sbjct: 107 MSPYKGRNLSMRFMVTLLSRESDWQRS 133
>ref|XP_004147489.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
gi|449530101|ref|XP_004172035.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cucumis sativus]
Length = 680
Score = 85.1 bits (209), Expect = 9e-15
Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 7/94 (7%)
Frame = -1
Query: 263 SSSSSSYKHVWXXXXXXXXXXXXXXXXXHQNQ-------LYLDHSINMNELMSSISQTST 105
+SSSS+ K +W +Q +LDHSI+M+EL++SI QT
Sbjct: 49 ASSSSTSKDIWRRQTPSEKSTTTLLPQKYQRSGRRPRESSHLDHSIDMDELLASIGQTKN 108
Query: 104 QQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
+QELY+++SPYK R+LS+RFMVSLLSRE DWQRS
Sbjct: 109 EQELYSVLSPYKGRELSMRFMVSLLSRESDWQRS 142
>ref|XP_004232248.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Solanum lycopersicum]
Length = 665
Score = 84.3 bits (207), Expect = 2e-14
Identities = 38/58 (65%), Positives = 50/58 (86%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
Q+ +LDHS++M++L+SSI QT+ + EL+ALMSPYK R LS+RFMV+LLSRE DWQRS
Sbjct: 73 QSTSFLDHSVDMDDLLSSIGQTANEHELFALMSPYKGRNLSMRFMVTLLSRESDWQRS 130
>gb|EYU34118.1| hypothetical protein MIMGU_mgv1a003395mg [Mimulus guttatus]
Length = 588
Score = 83.2 bits (204), Expect = 4e-14
Identities = 38/54 (70%), Positives = 48/54 (88%)
Frame = -1
Query: 164 YLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
++DHS++M+EL+SSI QTS + EL+AL+SPYK R LS+RFMVSLLSRE DWQRS
Sbjct: 14 FIDHSVDMDELLSSIGQTSDEHELFALLSPYKCRNLSIRFMVSLLSREADWQRS 67
>ref|XP_003601624.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490672|gb|AES71875.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 684
Score = 82.8 bits (203), Expect = 5e-14
Identities = 35/58 (60%), Positives = 49/58 (84%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
Q Y+D S++MNEL++SI+QT ++LY+++SPY RQLS+RFM+S+LSREPDWQRS
Sbjct: 86 QQSPYMDRSVDMNELLTSIAQTQNIEQLYSILSPYNGRQLSIRFMISILSREPDWQRS 143
>ref|XP_003552765.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 658
Score = 82.4 bits (202), Expect = 6e-14
Identities = 37/58 (63%), Positives = 47/58 (81%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
+ Q Y D S++M EL+++I QT + ELYA+MSPY RQLS+RFMVSLLSREPDWQR+
Sbjct: 61 RRQQYWDRSVDMEELLAAIGQTQNEDELYAVMSPYNGRQLSMRFMVSLLSREPDWQRA 118
>ref|XP_003538522.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Glycine max]
Length = 667
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/80 (50%), Positives = 50/80 (62%)
Frame = -1
Query: 242 KHVWXXXXXXXXXXXXXXXXXHQNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNR 63
K VW + Q YLD S++M L+++I QT + ELYA+MSPY R
Sbjct: 48 KDVWTRTSSSNTSRQRSSSSSRRQQQYLDRSVDMEVLLAAIGQTQNEDELYAVMSPYNGR 107
Query: 62 QLSLRFMVSLLSREPDWQRS 3
QLS+RFMVSLLSREPDWQR+
Sbjct: 108 QLSMRFMVSLLSREPDWQRA 127
>ref|XP_002517447.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223543458|gb|EEF44989.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 654
Score = 82.4 bits (202), Expect = 6e-14
Identities = 37/54 (68%), Positives = 47/54 (87%)
Frame = -1
Query: 164 YLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
YLDHS++M +L+ SISQT + ELY+L+SPYK RQLS+RFMVSL+S+E DWQRS
Sbjct: 64 YLDHSVDMKQLLISISQTQNEVELYSLLSPYKERQLSIRFMVSLISQEADWQRS 117
>ref|NP_198814.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171449|sp|Q9FLD8.1|PP408_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g39980, chloroplastic; Flags: Precursor
gi|10176990|dbj|BAB10222.1| unnamed protein product
[Arabidopsis thaliana] gi|332007115|gb|AED94498.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 678
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/58 (62%), Positives = 50/58 (86%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
Q +LDH+++M+EL++SI QT ++EL++L+S YK+RQLS+RFMVSLLSRE DWQRS
Sbjct: 81 QRSAFLDHNVDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRS 138
>ref|XP_007163838.1| hypothetical protein PHAVU_001G268500g [Phaseolus vulgaris]
gi|561037302|gb|ESW35832.1| hypothetical protein
PHAVU_001G268500g [Phaseolus vulgaris]
Length = 677
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/58 (62%), Positives = 47/58 (81%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
Q +LD S++M EL+++I +T + ELYA+MSPY RQLS+RFMVSLLSREPDWQR+
Sbjct: 80 QQATFLDRSMDMEELLAAIGETQNEDELYAVMSPYSGRQLSMRFMVSLLSREPDWQRT 137
>ref|XP_006405566.1| hypothetical protein EUTSA_v10028245mg [Eutrema salsugineum]
gi|557106704|gb|ESQ47019.1| hypothetical protein
EUTSA_v10028245mg [Eutrema salsugineum]
Length = 683
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/58 (62%), Positives = 49/58 (84%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
Q +LDH ++M++L++SI QT +QEL++L+S YK+RQLS+RFMVSLLSRE DWQRS
Sbjct: 86 QRSSFLDHKVDMDDLLASIHQTQNEQELFSLLSSYKDRQLSIRFMVSLLSREKDWQRS 143
>ref|XP_002870737.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297316573|gb|EFH46996.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 680
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/58 (62%), Positives = 50/58 (86%)
Frame = -1
Query: 176 QNQLYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
Q +LDH+++M+EL++SI QT ++EL++L+S YK+RQLS+RFMVSLLSRE DWQRS
Sbjct: 83 QRSAFLDHNVDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRS 140
>ref|XP_006482520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Citrus sinensis]
Length = 677
Score = 80.5 bits (197), Expect = 2e-13
Identities = 36/55 (65%), Positives = 50/55 (90%)
Frame = -1
Query: 167 LYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
++LDHS++MNEL+ SIS+T + EL+AL+SPYK+RQLS+RFMVSLL+RE ++QRS
Sbjct: 83 VHLDHSVDMNELLKSISETQNEHELFALLSPYKDRQLSIRFMVSLLTREQNYQRS 137
>ref|XP_006431055.1| hypothetical protein CICLE_v10011224mg [Citrus clementina]
gi|557533112|gb|ESR44295.1| hypothetical protein
CICLE_v10011224mg [Citrus clementina]
Length = 677
Score = 80.5 bits (197), Expect = 2e-13
Identities = 36/55 (65%), Positives = 50/55 (90%)
Frame = -1
Query: 167 LYLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
++LDHS++MNEL+ SIS+T + EL+AL+SPYK+RQLS+RFMVSLL+RE ++QRS
Sbjct: 83 VHLDHSVDMNELLKSISETQNEHELFALLSPYKDRQLSIRFMVSLLTREQNYQRS 137
>ref|XP_004502213.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39980,
chloroplastic-like [Cicer arietinum]
Length = 669
Score = 80.5 bits (197), Expect = 2e-13
Identities = 36/54 (66%), Positives = 45/54 (83%)
Frame = -1
Query: 164 YLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
YLD ++NMNEL++SI QT Q+L+A+MSPY LS+RFMVSLLSREPDWQR+
Sbjct: 75 YLDRTVNMNELLTSIGQTQNVQQLHAVMSPYNGTNLSIRFMVSLLSREPDWQRA 128
>ref|XP_006286056.1| hypothetical protein CARUB_v10007588mg [Capsella rubella]
gi|482554761|gb|EOA18954.1| hypothetical protein
CARUB_v10007588mg [Capsella rubella]
Length = 679
Score = 80.1 bits (196), Expect = 3e-13
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Frame = -1
Query: 263 SSSSSSYKHVWXXXXXXXXXXXXXXXXXH--QNQLYLDHSINMNELMSSISQTSTQQELY 90
SSSSS K VW Q +LDH ++M+EL++SI QT ++EL+
Sbjct: 52 SSSSSQTKKVWTKQQPEKKNSSTTLRKHRRYQRSAFLDHDVDMDELLASIHQTQNEKELF 111
Query: 89 ALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
+L+S YK+ QLS+RFMVSLLSRE DWQRS
Sbjct: 112 SLLSSYKDGQLSIRFMVSLLSRENDWQRS 140
>gb|EXB47690.1| hypothetical protein L484_010474 [Morus notabilis]
Length = 688
Score = 79.3 bits (194), Expect = 5e-13
Identities = 35/54 (64%), Positives = 47/54 (87%)
Frame = -1
Query: 164 YLDHSINMNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
YLDHS++M+EL+ SI QT +QEL++++SPYK RQLS++FMV +LSRE DWQRS
Sbjct: 96 YLDHSVDMDELLRSIWQTQNEQELFSVLSPYKGRQLSIKFMVLVLSRETDWQRS 149
>ref|XP_007215021.1| hypothetical protein PRUPE_ppa003340mg [Prunus persica]
gi|462411171|gb|EMJ16220.1| hypothetical protein
PRUPE_ppa003340mg [Prunus persica]
Length = 584
Score = 78.2 bits (191), Expect = 1e-12
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = -1
Query: 143 MNELMSSISQTSTQQELYALMSPYKNRQLSLRFMVSLLSREPDWQRS 3
M+EL+SSI QT +QELY+LMS YK RQLS+RFMVSLLSREPDWQRS
Sbjct: 1 MDELLSSIGQTQNEQELYSLMSTYKGRQLSIRFMVSLLSREPDWQRS 47