BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00044542
         (335 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containi...   137   1e-30
emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]   136   3e-30
emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]   134   2e-29
ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containi...   132   7e-29
emb|CBI31119.3| unnamed protein product [Vitis vinifera]              132   7e-29
ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containi...   128   7e-28
ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containi...   128   7e-28
ref|XP_007013319.1| Pentatricopeptide repeat-containing protein,...   127   1e-27
emb|CBI29005.3| unnamed protein product [Vitis vinifera]              127   2e-27
ref|XP_004231299.1| PREDICTED: pentatricopeptide repeat-containi...   126   3e-27
ref|XP_007014547.1| Pentatricopeptide repeat protein isoform 2 [...   125   6e-27
ref|XP_007014546.1| Pentatricopeptide repeat protein isoform 1 [...   125   6e-27
ref|XP_006344853.1| PREDICTED: pentatricopeptide repeat-containi...   125   8e-27
ref|XP_004500093.1| PREDICTED: pentatricopeptide repeat-containi...   124   1e-26
gb|AEK83305.1| At3g62890-like protein [Capsella grandiflora]          124   1e-26
ref|NP_181820.1| pentatricopeptide repeat-containing protein [Ar...   124   1e-26
ref|XP_004304908.1| PREDICTED: pentatricopeptide repeat-containi...   124   2e-26
gb|AFP20299.1| At3g62890-like protein, partial [Capsella grandif...   124   2e-26
gb|AET79028.1| At3g62890-like protein [Arabidopsis halleri] gi|3...   124   2e-26
gb|AET79025.1| At3g62890-like protein [Arabidopsis halleri]           124   2e-26

>ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  137 bits (346), Expect = 1e-30
 Identities = 63/109 (57%), Positives = 87/109 (79%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           +AG+ KCG ++ +  LF EMP R+VVSW+ ++  YAQ G+PN+ALALFD+MR    KP  
Sbjct: 330 LAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE 389

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
           AT+VSLLS+CA LGALD+G  +H Y+N ++++V+SI+GTAL+DMYAKCG
Sbjct: 390 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 438



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG +  + ++F+ M  ++V++W+ II   A  G   +A  LF EM++A  +PN  T 
Sbjct: 434 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITF 493

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQS---KMKVDSIIGTALIDMYAKCG 9
           V++LS+C+  G +D+G+ +   ++ S   + KV+      +ID+ A+ G
Sbjct: 494 VAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY--GCVIDLLARAG 540


>emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  136 bits (343), Expect = 3e-30
 Identities = 62/109 (56%), Positives = 87/109 (79%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           ++G+ KCG ++ +  LF EMP R+VVSW+ ++  YAQ G+PN+ALALFD+MR    KP  
Sbjct: 135 LSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE 194

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
           AT+VSLLS+CA LGALD+G  +H Y+N ++++V+SI+GTAL+DMYAKCG
Sbjct: 195 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 243



 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG +  + ++F+ M  ++V++W+ II   A  G   +A  LF EM++A  +PN  T 
Sbjct: 239 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITF 298

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQS---KMKVDSIIGTALIDMYAKCG 9
           V++LS+C+  G +D+G+ +   ++ S   + KV+      +ID+ A+ G
Sbjct: 299 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY--DCVIDLLARAG 345


>emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  134 bits (336), Expect = 2e-29
 Identities = 61/109 (55%), Positives = 86/109 (78%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           + G+ KCG ++ +  LF EMP R+VVSW+ ++  YAQ G+PN+ALALFD+M     KP+ 
Sbjct: 134 LXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSE 193

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
           AT+VSLLS+CA LGALD+G  +H Y+N ++++V+SI+GTAL+DMYAKCG
Sbjct: 194 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 242



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG +  + ++F+ M  ++V++W+ II   A  G   +A  LF EM++A  +PN  T 
Sbjct: 238 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITF 297

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQS---KMKVDSIIGTALIDMYAKCG 9
           V++LS+C+  G +D+G+ +   ++ S   + KV+      +ID+ A+ G
Sbjct: 298 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY--GCVIDLLARAG 344


>ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  132 bits (331), Expect = 7e-29
 Identities = 65/111 (58%), Positives = 85/111 (76%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I GYAK G +  +++LFDEMPE+N VSWS +IT YAQ G   +AL LF++M+ A  +PN 
Sbjct: 186 INGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNH 245

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
             IV  L++CA LGALDQG+ IH YV++++M +D I+GTALIDMYAKCGCV
Sbjct: 246 GAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCV 296



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 26/76 (34%), Positives = 50/76 (65%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG ++++ ++FDEM +R+V +++ +I+  A  G    A+ +F  M+     PN  T 
Sbjct: 290 YAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTF 349

Query: 146 VSLLSSCAQLGALDQG 99
           + LLS+C+++G +++G
Sbjct: 350 ICLLSACSRVGLVEEG 365


>emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  132 bits (331), Expect = 7e-29
 Identities = 65/111 (58%), Positives = 85/111 (76%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I GYAK G +  +++LFDEMPE+N VSWS +IT YAQ G   +AL LF++M+ A  +PN 
Sbjct: 161 INGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNH 220

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
             IV  L++CA LGALDQG+ IH YV++++M +D I+GTALIDMYAKCGCV
Sbjct: 221 GAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCGCV 271



 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 26/76 (34%), Positives = 50/76 (65%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG ++++ ++FDEM +R+V +++ +I+  A  G    A+ +F  M+     PN  T 
Sbjct: 265 YAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTF 324

Query: 146 VSLLSSCAQLGALDQG 99
           + LLS+C+++G +++G
Sbjct: 325 ICLLSACSRVGLVEEG 340


>ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  128 bits (322), Expect = 7e-28
 Identities = 57/111 (51%), Positives = 85/111 (76%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I+GY KC L+D++K +FD MPE++VVSWS +I+ YAQ    ++ LALF EM+ +  KP+ 
Sbjct: 449 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 508

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
            T+VS++S+CA+L AL+QGK +H Y+ ++ + ++ I+GT LIDMY KCGCV
Sbjct: 509 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCV 559



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = -1

Query: 314 GLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATIVSLL 135
           GL+  + KLFDEM E+++V+WS +I  + Q     +A+  F  M K     +    VS L
Sbjct: 324 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 383

Query: 134 SSCAQLGALDQGKGIHIYVNQSKMKVDSIIG--TALIDMYAKCG 9
           S+CA L  ++ GK IH      K+  +S I    ALI MY+KCG
Sbjct: 384 SACANLLVVNMGKLIHSL--SLKIGTESYINLQNALIYMYSKCG 425



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           Y KCG ++++ ++F  M E+ + +W+ +I   A  G    +L +F  M+K    PN  T 
Sbjct: 553 YMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITF 612

Query: 146 VSLLSSCAQLGALDQGKGIHIY--VNQSKMKVDSIIGTALIDMYAKCG 9
           + +L +C  +G +D+G+  H Y  ++  K++ +      ++D+  + G
Sbjct: 613 MGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMVDLLGRAG 659


>ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  128 bits (322), Expect = 7e-28
 Identities = 57/111 (51%), Positives = 85/111 (76%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I+GY KC L+D++K +FD MPE++VVSWS +I+ YAQ    ++ LALF EM+ +  KP+ 
Sbjct: 314 ISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDE 373

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
            T+VS++S+CA+L AL+QGK +H Y+ ++ + ++ I+GT LIDMY KCGCV
Sbjct: 374 TTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCV 424



 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 40/104 (38%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = -1

Query: 314 GLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATIVSLL 135
           GL+  + KLFDEM E+++V+WS +I  + Q     +A+  F  M K     +    VS L
Sbjct: 189 GLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSAL 248

Query: 134 SSCAQLGALDQGKGIHIYVNQSKMKVDSIIG--TALIDMYAKCG 9
           S+CA L  ++ GK IH      K+  +S I    ALI MY+KCG
Sbjct: 249 SACANLLVVNMGKLIHSL--SLKIGTESYINLQNALIYMYSKCG 290



 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           Y KCG ++++ ++F  M E+ + +W+ +I   A  G    +L +F  M+K    PN  T 
Sbjct: 418 YMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITF 477

Query: 146 VSLLSSCAQLGALDQGKGIHIY--VNQSKMKVDSIIGTALIDMYAKCG 9
           + +L +C  +G +D+G+  H Y  ++  K++ +      ++D+  + G
Sbjct: 478 MGVLGACRHMGLVDEGQH-HFYSMIHDHKIQPNVKHYGCMVDLLGRAG 524


>ref|XP_007013319.1| Pentatricopeptide repeat-containing protein, putative [Theobroma
           cacao] gi|508783682|gb|EOY30938.1| Pentatricopeptide
           repeat-containing protein, putative [Theobroma cacao]
          Length = 626

 Score =  127 bits (320), Expect = 1e-27
 Identities = 57/111 (51%), Positives = 84/111 (75%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           ++GY  CGLLD +++LFD  P R+VV W+ +I  Y Q  + ++++ LF EM+  + KP+ 
Sbjct: 310 VSGYVNCGLLDEARELFDRSPVRDVVLWTAMINGYVQFNRFDESMELFKEMQIQRVKPDN 369

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
             +VSLL+ CAQ+GAL QGK IH Y+N++++ VD+I+GTALI+MYAKCGCV
Sbjct: 370 FVVVSLLTGCAQMGALGQGKWIHAYLNENRIVVDTIVGTALIEMYAKCGCV 420



 Score = 85.5 bits (210), Expect = 7e-15
 Identities = 47/109 (43%), Positives = 72/109 (66%), Gaps = 1/109 (0%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEM-RKAKRKPNCAT 150
           Y + G +  SKK+FD+MPER+VV+W+ +I+   + G    A+ +F  M ++   KPN AT
Sbjct: 181 YVQLGRVVYSKKIFDKMPERDVVAWNVLISGLVRCGIFEDAVNVFGLMIKEGLVKPNEAT 240

Query: 149 IVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
           IVS LS+C  L  L+ G  I  YV + ++++ +I+G AL+DMY KCGC+
Sbjct: 241 IVSTLSACTALRRLELGNEIDRYV-RKELELTTIMGNALLDMYCKCGCL 288



 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 25/77 (32%), Positives = 50/77 (64%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG ++ + ++F  + +++  SW+ +I   A  G+ +KAL LF +M++ + KP+  T 
Sbjct: 414 YAKCGCVEEALEIFYGLSKKDTASWTSVICGLAVNGEASKALELFSQMKQTEEKPDDITF 473

Query: 146 VSLLSSCAQLGALDQGK 96
           + +LS+C   G +++G+
Sbjct: 474 IGVLSACNHGGLVEEGR 490


>emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  127 bits (319), Expect = 2e-27
 Identities = 60/102 (58%), Positives = 80/102 (78%)
 Frame = -1

Query: 314 GLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATIVSLL 135
           G  D +  LF EMP R+VVSW+ ++  YAQ G+PN+ALALFD+MR    KP  AT+VSLL
Sbjct: 162 GKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLL 221

Query: 134 SSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
           S+CA LGALD+G  +H Y+N ++++V+SI+GTAL+DMYAKCG
Sbjct: 222 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 263



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 36/109 (33%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG +  + ++F+ M  ++V++W+ II   A  G   +A  LF EM++A  +PN  T 
Sbjct: 259 YAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITF 318

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQS---KMKVDSIIGTALIDMYAKCG 9
           V++LS+C+  G +D+G+ +   ++ S   + KV+      +ID+ A+ G
Sbjct: 319 VAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHY--GCVIDLLARAG 365


>ref|XP_004231299.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Solanum lycopersicum]
          Length = 707

 Score =  126 bits (317), Expect = 3e-27
 Identities = 58/111 (52%), Positives = 82/111 (73%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I+GY KCG ++ +++LFD M E++VVSW+ +I+ YAQ    ++ LALF EM     KP+ 
Sbjct: 193 ISGYLKCGSVEKARELFDSMAEKDVVSWTTMISGYAQHDHFSETLALFQEMLHEDSKPDE 252

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
            T+VS+LS+C  L ALDQGK IH Y+ ++ +KV+SI+GT L+DMY KCGCV
Sbjct: 253 TTLVSVLSACTHLSALDQGKWIHAYIRKNGLKVNSILGTTLVDMYMKCGCV 303



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 26/77 (33%), Positives = 49/77 (63%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           Y KCG ++++ ++F+ M E+ V SW+ +I   A  GQ  ++L +F +M++    PN  T 
Sbjct: 297 YMKCGCVENALEVFNAMEEKGVSSWNALILGLAMNGQVERSLDMFQKMKECGVTPNEVTF 356

Query: 146 VSLLSSCAQLGALDQGK 96
           V++L +C  +G +D+G+
Sbjct: 357 VAVLGACRHMGLVDEGR 373


>ref|XP_007014547.1| Pentatricopeptide repeat protein isoform 2 [Theobroma cacao]
           gi|508784910|gb|EOY32166.1| Pentatricopeptide repeat
           protein isoform 2 [Theobroma cacao]
          Length = 511

 Score =  125 bits (314), Expect = 6e-27
 Identities = 56/109 (51%), Positives = 82/109 (75%)
 Frame = -1

Query: 329 GYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCAT 150
           GY + G  + +++LFD+MPERN VSWS +IT Y Q G   +A+ LF++M+ +  +PN A 
Sbjct: 161 GYVQSGQAEFARELFDQMPERNAVSWSAMITGYVQMGMFREAMGLFNDMQLSGLRPNHAG 220

Query: 149 IVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
           IV  L++CA LGALD G+ IH YV+++ M++D ++GTAL+DMYAKCGC+
Sbjct: 221 IVGALTACAFLGALDHGRWIHAYVDRNGMELDRVLGTALVDMYAKCGCI 269



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 29/85 (34%), Positives = 54/85 (63%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG ++ +  +FDEMP ++V +++ +I+  A   Q  +A+ LF  M+     PN  T 
Sbjct: 263 YAKCGCIEMACSVFDEMPYKDVFAFTSLISGLANHDQSARAIELFARMQSEGVVPNEVTF 322

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQ 72
           + +LS+C+++G +D+G  I  Y+++
Sbjct: 323 ICVLSACSRMGLVDEGLRIFNYMSK 347


>ref|XP_007014546.1| Pentatricopeptide repeat protein isoform 1 [Theobroma cacao]
           gi|508784909|gb|EOY32165.1| Pentatricopeptide repeat
           protein isoform 1 [Theobroma cacao]
          Length = 537

 Score =  125 bits (314), Expect = 6e-27
 Identities = 56/109 (51%), Positives = 82/109 (75%)
 Frame = -1

Query: 329 GYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCAT 150
           GY + G  + +++LFD+MPERN VSWS +IT Y Q G   +A+ LF++M+ +  +PN A 
Sbjct: 187 GYVQSGQAEFARELFDQMPERNAVSWSAMITGYVQMGMFREAMGLFNDMQLSGLRPNHAG 246

Query: 149 IVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
           IV  L++CA LGALD G+ IH YV+++ M++D ++GTAL+DMYAKCGC+
Sbjct: 247 IVGALTACAFLGALDHGRWIHAYVDRNGMELDRVLGTALVDMYAKCGCI 295



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 29/85 (34%), Positives = 54/85 (63%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           YAKCG ++ +  +FDEMP ++V +++ +I+  A   Q  +A+ LF  M+     PN  T 
Sbjct: 289 YAKCGCIEMACSVFDEMPYKDVFAFTSLISGLANHDQSARAIELFARMQSEGVVPNEVTF 348

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQ 72
           + +LS+C+++G +D+G  I  Y+++
Sbjct: 349 ICVLSACSRMGLVDEGLRIFNYMSK 373


>ref|XP_006344853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Solanum tuberosum]
          Length = 745

 Score =  125 bits (313), Expect = 8e-27
 Identities = 58/111 (52%), Positives = 81/111 (72%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I+GY KC  L+ +++LFD M E++VVSW+ +I+ YAQ    ++ LALF EM     KP+ 
Sbjct: 314 ISGYLKCDSLEQARELFDSMTEKDVVSWTTMISGYAQHDHFSETLALFQEMLHEDNKPDE 373

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
            T+VS+LS+C  L ALDQGK IH Y+ ++ +KV+SI+GT L+DMY KCGCV
Sbjct: 374 TTLVSVLSACTHLSALDQGKWIHAYIRKNGLKVNSILGTTLLDMYMKCGCV 424



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 26/77 (33%), Positives = 49/77 (63%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           Y KCG ++++ ++F+ M E+ V SW+ +I   A  GQ  ++L +F +M++    PN  T 
Sbjct: 418 YMKCGCVENALEVFNGMEEKGVSSWNALILGLAMNGQVERSLDMFQKMKECGVTPNEVTF 477

Query: 146 VSLLSSCAQLGALDQGK 96
           V++L +C  +G +D+G+
Sbjct: 478 VAVLGACRHMGLVDEGR 494


>ref|XP_004500093.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like isoform X1 [Cicer arietinum]
           gi|502128825|ref|XP_004500094.1| PREDICTED:
           pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like isoform X2 [Cicer arietinum]
          Length = 785

 Score =  124 bits (312), Expect = 1e-26
 Identities = 57/111 (51%), Positives = 84/111 (75%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I+GY  CGL++ +K LFD M E++VVSWS +I+ YAQ G  ++A+ALF EM+    +P+ 
Sbjct: 354 ISGYLMCGLVEDAKTLFDSMVEKDVVSWSAMISGYAQHGCFSEAVALFQEMQLLGIRPDE 413

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
             +VS++S+C Q+ ALD GK IH Y++++K++V+ I+GT LIDMY KCGCV
Sbjct: 414 TALVSVISACTQMAALDLGKWIHAYISKNKLRVNVILGTTLIDMYMKCGCV 464



 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 26/77 (33%), Positives = 47/77 (61%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           Y KCG ++++ ++F  M E+ V +W+ +I   A  G   K+L +F +M+K K  PN  T 
Sbjct: 458 YMKCGCVENALEVFHAMEEKGVSTWNALILGLAMNGLVEKSLDMFADMKKTKTLPNEITF 517

Query: 146 VSLLSSCAQLGALDQGK 96
           + +L +C  +G +D+G+
Sbjct: 518 MGVLGACRHMGLVDEGR 534



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 29/106 (27%), Positives = 57/106 (53%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           + + G +  +++LFD++  +++VSWS +I+ Y Q G   +AL LF +M       +   +
Sbjct: 225 FGRKGCVAKARRLFDQIEGKDMVSWSAMISCYEQNGMSEEALILFVDMNANGVMVDEVVM 284

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
           VS +S+   L  +  G+ +H    +  ++    +  ALI +Y+ CG
Sbjct: 285 VSAISASTSLSVVGMGRSVHGLAAKVGIQDYVSLQNALIHLYSSCG 330


>gb|AEK83305.1| At3g62890-like protein [Capsella grandiflora]
          Length = 183

 Score =  124 bits (311), Expect = 1e-26
 Identities = 59/114 (51%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKR---- 168
           +  YAK G LD ++KLFDEMPERNV+SWS +I  Y   G+  +AL LF EM+  K     
Sbjct: 29  VXSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFREMQLPKPNEAF 88

Query: 167 -KPNCATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
            KPN  T+ ++LS+C +LGAL+QGK +H Y+++ ++++D ++GTALIDMYAKCG
Sbjct: 89  VKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMYAKCG 142


>ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
           gi|4512663|gb|AAD21717.1| hypothetical protein
           [Arabidopsis thaliana] gi|20197867|gb|AAM15291.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|110738441|dbj|BAF01146.1| hypothetical protein
           [Arabidopsis thaliana] gi|330255093|gb|AEC10187.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 559

 Score =  124 bits (311), Expect = 1e-26
 Identities = 56/111 (50%), Positives = 85/111 (76%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I G+AKCGL+D ++ LFDEMP+RN VSW+ +I+ + + G+   AL +F EM++   KP+ 
Sbjct: 199 IMGFAKCGLIDQAQNLFDEMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDG 258

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
            T+VSLL++CA LGA +QG+ IH Y+ +++ +++SI+ TALIDMY KCGC+
Sbjct: 259 FTMVSLLNACAYLGASEQGRWIHEYIVRNRFELNSIVVTALIDMYCKCGCI 309


>ref|XP_004304908.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Fragaria vesca subsp. vesca]
          Length = 777

 Score =  124 bits (310), Expect = 2e-26
 Identities = 54/111 (48%), Positives = 86/111 (77%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNC 156
           I+GY +CGL++++++LFD MPE++VVSWS +I+ YAQ  + ++ LALF EM+ +  +P+ 
Sbjct: 346 ISGYLRCGLVETAQRLFDSMPEKDVVSWSAMISGYAQHDRFSETLALFQEMQLSGIRPDE 405

Query: 155 ATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCGCV 3
            T+VS++S+C  L ALD G+ IH Y+ ++++KV+  +GT LI+MY KCGCV
Sbjct: 406 TTLVSVISACTHLAALDLGQWIHAYIRKNRLKVNVFLGTTLINMYLKCGCV 456



 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           + K G ++ +++LFD++P++++VSWS +I+ + Q      AL +F +M       +   +
Sbjct: 217 FGKRGCVNEARRLFDDLPQKDMVSWSALISCFEQNEMYEDALEMFVKMVAEGVMVDEVVV 276

Query: 146 VSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIG--TALIDMYAKCG 9
           VS+LS+CA +  +  GK IH  V   K+ ++S +    A I MY+ CG
Sbjct: 277 VSVLSACAHMSGVHTGKLIHGLV--VKIGIESYVNLQNAFIHMYSSCG 322



 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 25/77 (32%), Positives = 47/77 (61%)
 Frame = -1

Query: 326 YAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRKPNCATI 147
           Y KCG ++++ ++F+E  E+ V +W+ +I   A  G   K+L +F EM+K    PN  T 
Sbjct: 450 YLKCGCVENALEVFEETAEKGVSTWNALILGLAMNGLVEKSLEMFSEMKKCGVAPNEITF 509

Query: 146 VSLLSSCAQLGALDQGK 96
           + ++ +C  +G +D+G+
Sbjct: 510 MGVMGACRHMGLVDEGR 526


>gb|AFP20299.1| At3g62890-like protein, partial [Capsella grandiflora]
          Length = 183

 Score =  124 bits (310), Expect = 2e-26
 Identities = 59/114 (51%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKR---- 168
           +  YAK G LD ++KLFDEMPERNV+SWS +I  Y   G+  +AL LF EM+  K     
Sbjct: 29  VNSYAKAGFLDDARKLFDEMPERNVISWSCLINGYFMRGKYKEALDLFREMQLPKPNEAF 88

Query: 167 -KPNCATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
            KPN  T+ ++LS+C +LGAL+QGK +H Y+++ ++++D ++GTALIDMYAKCG
Sbjct: 89  VKPNKFTLSTVLSACGRLGALEQGKWVHAYIDKHQVEIDIVLGTALIDMYAKCG 142


>gb|AET79028.1| At3g62890-like protein [Arabidopsis halleri]
           gi|357432706|gb|AET79030.1| At3g62890-like protein
           [Arabidopsis halleri]
          Length = 151

 Score =  124 bits (310), Expect = 2e-26
 Identities = 60/114 (52%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRK--- 165
           I  YAK GL+D ++KLFDEMPERNV+SWS +I  Y   G+  +AL LF EM+  K     
Sbjct: 20  INAYAKAGLIDXARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKSNEAF 79

Query: 164 --PNCATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
             PN  T+ ++LS+C +LGAL+QGK +H Y+++ ++K+D ++GTALIDMYAKCG
Sbjct: 80  VSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYQVKIDIVLGTALIDMYAKCG 133


>gb|AET79025.1| At3g62890-like protein [Arabidopsis halleri]
          Length = 151

 Score =  124 bits (310), Expect = 2e-26
 Identities = 60/114 (52%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
 Frame = -1

Query: 335 IAGYAKCGLLDSSKKLFDEMPERNVVSWSGIITAYAQGGQPNKALALFDEMRKAKRK--- 165
           I  YAK GL+D ++KLFDEMPERNV+SWS +I  Y   G+  +AL LF EM+  K     
Sbjct: 20  INAYAKAGLIDHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKSNEAF 79

Query: 164 --PNCATIVSLLSSCAQLGALDQGKGIHIYVNQSKMKVDSIIGTALIDMYAKCG 9
             PN  T+ ++LS+C +LGAL+QGK +H Y+++ ++K+D ++GTALIDMYAKCG
Sbjct: 80  VSPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYQVKIDIVLGTALIDMYAKCG 133