BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00044400
         (753 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_740641.1| RNA polymerase beta [Nandina domestica] gi|1221...   420   e-115
ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis ...   415   e-113
ref|YP_008081356.1| RNA polymerase beta' subunit (chloroplast) [...   414   e-113
ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis] gi|...   414   e-113
gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum]       413   e-113
gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum]       412   e-113
ref|YP_008993167.1| RNA polymerase beta (chloroplast) [Magnolia ...   410   e-112
ref|YP_008592630.1| RNA polymerase beta (chloroplast) [Berberis ...   410   e-112
ref|YP_008993597.1| RNA polymerase beta (chloroplast) [Magnolia ...   409   e-112
ref|YP_008965484.1| RNA polymerase beta [Pyrus spinosa] gi|56566...   409   e-112
ref|YP_008081448.1| RNA polymerase beta' subunit (chloroplast) [...   409   e-112
ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifoli...   409   e-112
gb|ADD31185.1| RNA polymerase beta' subunit protein [Trochodendr...   409   e-112
gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma af...   409   e-112
gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia in...   409   e-112
ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]...   408   e-112
ref|YP_008993511.1| RNA polymerase beta (chloroplast) [Magnolia ...   408   e-111
gb|AEX98242.1| RNA polymerase beta' subunit (chloroplast) [Magno...   408   e-111
gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus]     408   e-111
ref|YP_001004177.1| RNA polymerase beta' subunit [Ranunculus mac...   408   e-111

>ref|YP_740641.1| RNA polymerase beta [Nandina domestica]
            gi|122165970|sp|Q09FX0.1|RPOC1_NANDO RecName:
            Full=DNA-directed RNA polymerase subunit beta'; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta'; Short=RNA polymerase subunit beta'
            gi|114054461|gb|ABI49854.1| RNA polymerase beta [Nandina
            domestica]
          Length = 680

 Score =  420 bits (1080), Expect = e-115
 Identities = 203/222 (91%), Positives = 211/222 (95%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAI LHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAIFLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDMLMGLYVLT GN RGICANRYNP N+RNYQNEK D+NNYKYTKE
Sbjct: 519  LLSPAIGDPISVPTQDMLMGLYVLTTGNHRGICANRYNPSNHRNYQNEKIDDNNYKYTKE 578

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVIASREVP+EVQYES+GTYHE+YG YL
Sbjct: 579  PYFCSSYDALGAYRQKRIYLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYL 638

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVRNVKKEI CI IRTTVG+I+FYREIEEA+QGFCRACS GT
Sbjct: 639  IVRNVKKEILCIDIRTTVGHISFYREIEEAIQGFCRACSYGT 680


>ref|YP_002836081.1| RNA polymerase beta' subunit [Megaleranthis saniculifolia]
            gi|226933873|gb|ACO92006.1| RNA polymerase beta' subunit
            [Megaleranthis saniculifolia]
          Length = 680

 Score =  415 bits (1066), Expect = e-113
 Identities = 200/222 (90%), Positives = 209/222 (94%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHIPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNP N+RNYQNEK D+NN+KYTKE
Sbjct: 519  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNHRNYQNEKIDDNNHKYTKE 578

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGAY QKRI LDSPLWLRWRLDQRVIA REVP+EVQ ES GTYHE+YG YL
Sbjct: 579  PYFCSSYDALGAYWQKRINLDSPLWLRWRLDQRVIAPREVPIEVQCESFGTYHEIYGHYL 638

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVRNVKKEI CI IRTTVG+I+FYREIEEA+QGFCRACS  T
Sbjct: 639  IVRNVKKEILCIDIRTTVGHISFYREIEEAIQGFCRACSYST 680


>ref|YP_008081356.1| RNA polymerase beta' subunit (chloroplast) [Tetracentron sinense]
            gi|479279194|gb|AGJ72048.1| RNA polymerase beta' subunit
            (chloroplast) [Tetracentron sinense]
          Length = 682

 Score =  414 bits (1063), Expect = e-113
 Identities = 199/224 (88%), Positives = 211/224 (94%), Gaps = 2/224 (0%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYT-- 400
            LLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPCNYRNY+NE+ D+NNYKYT  
Sbjct: 519  LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNYRNYKNERIDDNNYKYTKE 578

Query: 399  KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGR 220
            KEPYF SSYDA+GAYRQKRI LDSPLWLRWRLDQR+IASREVP+EV YES+GTYHE+YG 
Sbjct: 579  KEPYFFSSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREVPIEVHYESLGTYHEIYGH 638

Query: 219  YLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            YLIVR+VKK+I CIYIRTTVG I FYREIEEA+QGFCRACS GT
Sbjct: 639  YLIVRSVKKQILCIYIRTTVGPIYFYREIEEAIQGFCRACSYGT 682


>ref|YP_740556.1| RNA polymerase beta [Platanus occidentalis]
            gi|122166044|sp|Q09G55.1|RPOC1_PLAOC RecName:
            Full=DNA-directed RNA polymerase subunit beta'; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta'; Short=RNA polymerase subunit beta'
            gi|114054375|gb|ABI49769.1| RNA polymerase beta [Platanus
            occidentalis]
          Length = 682

 Score =  414 bits (1063), Expect = e-113
 Identities = 202/224 (90%), Positives = 212/224 (94%), Gaps = 2/224 (0%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEG AICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGCAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYT-- 400
            LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNP N RNYQNE+ D+NNY+YT  
Sbjct: 519  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPRNRRNYQNERIDDNNYRYTKE 578

Query: 399  KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGR 220
            KEPYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVIASREVP+EVQYES+GTYHE+YG 
Sbjct: 579  KEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGH 638

Query: 219  YLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            YLIVR+VKKEI CIYIRTTVG+I+FYREIEEA+QGFCRACS GT
Sbjct: 639  YLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRACSYGT 682


>gb|ABW40754.1| RNA polymerase beta subunit [Papaver somniferum]
          Length = 682

 Score =  413 bits (1062), Expect = e-113
 Identities = 199/224 (88%), Positives = 210/224 (93%), Gaps = 2/224 (0%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYT-- 400
            LLSPAIGDPIS+PTQDMLMGLYVLTIGNRRGICANRYNPCN+ NYQNEK D+NNYKYT  
Sbjct: 519  LLSPAIGDPISIPTQDMLMGLYVLTIGNRRGICANRYNPCNHLNYQNEKIDDNNYKYTKE 578

Query: 399  KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGR 220
            KEPYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVI SREVP+EVQY+S GTYHE+YG 
Sbjct: 579  KEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIGSREVPIEVQYDSFGTYHEIYGH 638

Query: 219  YLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            YLIVR+VKKE  CIYIRTTVG+I+FYREIEEA+QGF +ACS  T
Sbjct: 639  YLIVRSVKKETLCIYIRTTVGHISFYREIEEAIQGFSQACSYDT 682


>gb|ABW40753.1| RNA polymerase beta subunit [Papaver somniferum]
          Length = 682

 Score =  412 bits (1058), Expect = e-113
 Identities = 198/224 (88%), Positives = 209/224 (93%), Gaps = 2/224 (0%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYT-- 400
            LLSPAIGDPIS+PTQDMLMGLYVLTIGNRRGICANRYNPCN+ NYQNEK D+NNYKYT  
Sbjct: 519  LLSPAIGDPISIPTQDMLMGLYVLTIGNRRGICANRYNPCNHLNYQNEKIDDNNYKYTKE 578

Query: 399  KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGR 220
            KEPYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVI SREVP+EVQY+S GTYHE+YG 
Sbjct: 579  KEPYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIGSREVPIEVQYDSFGTYHEIYGH 638

Query: 219  YLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            YLIVR+VKKE  CIYIRTTVG+I+FYREIEEA+QGF +ACS  T
Sbjct: 639  YLIVRSVKKETLCIYIRTTVGHISFYREIEEAIQGFSQACSYDT 682


>ref|YP_008993167.1| RNA polymerase beta (chloroplast) [Magnolia cathcartii]
          Length = 684

 Score =  410 bits (1055), Expect = e-112
 Identities = 197/222 (88%), Positives = 208/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 463  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 522

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDML+GLY+LTIGNRRGIC+NRYNPCN RNYQNE  D+N Y   KE
Sbjct: 523  LLSPAIGDPISVPTQDMLIGLYILTIGNRRGICSNRYNPCNRRNYQNETVDDNKYTKEKE 582

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVIASREVP+EVQYES+GTYHE+YG YL
Sbjct: 583  PYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYL 642

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVR+VKKEI CIYIRTTVG+I+FYREIEEA+QGFCRA S  T
Sbjct: 643  IVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYSYDT 684


>ref|YP_008592630.1| RNA polymerase beta (chloroplast) [Berberis bealei]
            gi|536462671|gb|AGU37036.1| RNA polymerase beta
            (chloroplast) [Berberis bealei]
          Length = 684

 Score =  410 bits (1055), Expect = e-112
 Identities = 198/222 (89%), Positives = 208/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAI LHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 463  HRLGIQAFQPILVEGRAIFLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 522

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDMLMGLYVLTIGN RGICA RYNPCN+RN QNEK DNNNYKY KE
Sbjct: 523  LLSPAIGDPISVPTQDMLMGLYVLTIGNHRGICAKRYNPCNHRNSQNEKMDNNNYKYAKE 582

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGAYRQKRI L+SPLWL+WRLDQRVIASREVP+EVQYES+GTYHE+YG YL
Sbjct: 583  PYFCSSYDALGAYRQKRINLNSPLWLQWRLDQRVIASREVPIEVQYESLGTYHEIYGHYL 642

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVRN+KKEI CI IRTTVG+I+FYREIEEA+QGF RACS  T
Sbjct: 643  IVRNIKKEILCIDIRTTVGHISFYREIEEAIQGFYRACSYDT 684


>ref|YP_008993597.1| RNA polymerase beta (chloroplast) [Magnolia odora]
          Length = 685

 Score =  409 bits (1051), Expect = e-112
 Identities = 196/222 (88%), Positives = 207/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 464  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 523

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDML+GLY+LTIGNRRGIC+NRYNPCN RNYQNE  D+N Y   KE
Sbjct: 524  LLSPAIGDPISVPTQDMLIGLYILTIGNRRGICSNRYNPCNRRNYQNETVDDNKYTKEKE 583

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVIASREVP+EVQYES+GTYHE+YG YL
Sbjct: 584  PYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYL 643

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVR+VKKEI CIYIRTT G+I+FYREIEEA+QGFCRA S  T
Sbjct: 644  IVRSVKKEILCIYIRTTAGHISFYREIEEAIQGFCRAYSYDT 685


>ref|YP_008965484.1| RNA polymerase beta [Pyrus spinosa] gi|565666456|emb|CDI73556.1| RNA
            polymerase beta [Pyrus spinosa]
          Length = 687

 Score =  409 bits (1051), Expect = e-112
 Identities = 192/222 (86%), Positives = 208/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 466  HRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 525

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPCN RNYQN++ D+NNYKYTKE
Sbjct: 526  LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKE 585

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            P+F +SYDA+GAYRQKRI LDSPLWLRWRLDQRVI SRE P+EV YES+GTYHE+YG YL
Sbjct: 586  PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYL 645

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVR++KKEI CIY+RTTVG+I+ YREIEEA+QGFCRA S GT
Sbjct: 646  IVRSIKKEIICIYVRTTVGHISLYREIEEAIQGFCRAYSYGT 687


>ref|YP_008081448.1| RNA polymerase beta' subunit (chloroplast) [Trochodendron aralioides]
            gi|479279287|gb|AGJ72140.1| RNA polymerase beta' subunit
            (chloroplast) [Trochodendron aralioides]
          Length = 689

 Score =  409 bits (1051), Expect = e-112
 Identities = 199/231 (86%), Positives = 211/231 (91%), Gaps = 9/231 (3%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYT-- 400
            LLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPCN+RNY+NE+ D+NNYKYT  
Sbjct: 519  LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNHRNYKNERIDDNNYKYTKE 578

Query: 399  -------KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGT 241
                   KEPYF SSYDA+GAYRQKRI LDSPLWLRWRLDQRVIASREVP+EV YES+GT
Sbjct: 579  KDKYTKEKEPYFFSSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREVPVEVHYESLGT 638

Query: 240  YHEVYGRYLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            YHE+YG YLIVR+VKK+I CIYIRTTVG I FYREIEEA+QGFCRACS GT
Sbjct: 639  YHEIYGHYLIVRSVKKQILCIYIRTTVGPIYFYREIEEAIQGFCRACSYGT 689


>ref|YP_004842230.1| RNA polymerase beta' subunit [Pyrus pyrifolia]
            gi|345433552|dbj|BAK69374.1| RNA polymerase beta' subunit
            [Pyrus pyrifolia]
          Length = 681

 Score =  409 bits (1051), Expect = e-112
 Identities = 192/222 (86%), Positives = 208/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 460  HRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 519

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPCN RNYQN++ D+NNYKYTKE
Sbjct: 520  LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNKRIDDNNYKYTKE 579

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            P+F +SYDA+GAYRQKRI LDSPLWLRWRLDQRVI SRE P+EV YES+GTYHE+YG YL
Sbjct: 580  PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVITSRETPIEVHYESLGTYHEIYGHYL 639

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVR++KKEI CIY+RTTVG+I+ YREIEEA+QGFCRA S GT
Sbjct: 640  IVRSIKKEIICIYVRTTVGHISLYREIEEAIQGFCRAYSYGT 681


>gb|ADD31185.1| RNA polymerase beta' subunit protein [Trochodendron aralioides]
          Length = 696

 Score =  409 bits (1051), Expect = e-112
 Identities = 199/231 (86%), Positives = 211/231 (91%), Gaps = 9/231 (3%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 466  HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 525

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYT-- 400
            LLSPAIGDPISVPTQDML+GLYVLT GNRRGICANRYNPCN+RNY+NE+ D+NNYKYT  
Sbjct: 526  LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNHRNYKNERIDDNNYKYTKE 585

Query: 399  -------KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGT 241
                   KEPYF SSYDA+GAYRQKRI LDSPLWLRWRLDQRVIASREVP+EV YES+GT
Sbjct: 586  KDKYTKEKEPYFFSSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREVPVEVHYESLGT 645

Query: 240  YHEVYGRYLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            YHE+YG YLIVR+VKK+I CIYIRTTVG I FYREIEEA+QGFCRACS GT
Sbjct: 646  YHEIYGHYLIVRSVKKQILCIYIRTTVGPIYFYREIEEAIQGFCRACSYGT 696


>gb|ADD31167.1| RNA polymerase beta' subunit protein [Meliosma aff. cuneifolia Moore
            333]
          Length = 703

 Score =  409 bits (1051), Expect = e-112
 Identities = 197/221 (89%), Positives = 210/221 (95%), Gaps = 2/221 (0%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYT-- 400
            LLSPAIGDPISVPTQDML+GLYVLTIGNRRGICANRYNPCN+RNYQN++ D+NN KYT  
Sbjct: 519  LLSPAIGDPISVPTQDMLIGLYVLTIGNRRGICANRYNPCNHRNYQNKRIDDNNEKYTKE 578

Query: 399  KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGR 220
            KEPYF SSYD LGAY+QKRI LDSPLW RWRLDQRVIASREVP+EVQYES+GTYHE+YG 
Sbjct: 579  KEPYFCSSYDVLGAYQQKRITLDSPLWFRWRLDQRVIASREVPVEVQYESLGTYHEIYGH 638

Query: 219  YLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACS 97
            YLIVR+VKKEI CIYIRTTVG+I+FYREIEEA+QGF RACS
Sbjct: 639  YLIVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFWRACS 679


>gb|ADD31163.1| RNA polymerase beta' subunit protein [Dillenia indica]
          Length = 689

 Score =  409 bits (1050), Expect = e-112
 Identities = 194/224 (86%), Positives = 210/224 (93%), Gaps = 2/224 (0%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 466  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 525

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDN--NNYKYT 400
            LLSPAIGDPIS+PTQDML+GLYVLT GNRRGICA RYNPCN +NYQNE+ D+  NNYKYT
Sbjct: 526  LLSPAIGDPISIPTQDMLIGLYVLTSGNRRGICATRYNPCNCKNYQNERIDDITNNYKYT 585

Query: 399  KEPYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGR 220
            KEP FS+SYDA+GA+RQKRI LDSPLWLRWRLDQR+IASRE P+EV YES+GTYHE+YG 
Sbjct: 586  KEPLFSNSYDAIGAFRQKRINLDSPLWLRWRLDQRIIASREAPIEVHYESLGTYHEIYGH 645

Query: 219  YLIVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            YLIVR+VKKEI CIYIRTTVG+I+ YREIEEA+QGFCRACS GT
Sbjct: 646  YLIVRSVKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 689


>ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]
            gi|212288463|sp|B1A926.1|RPOC1_CARPA RecName:
            Full=DNA-directed RNA polymerase subunit beta'; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta'; Short=RNA polymerase subunit beta'
            gi|166344123|gb|ABY86773.1| RNA polymerase beta' chain
            [Carica papaya]
          Length = 680

 Score =  408 bits (1049), Expect = e-112
 Identities = 194/222 (87%), Positives = 208/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDMLMGLYVLT G RRGICANRYNPCN +NYQNE+ D+NNYKYTKE
Sbjct: 519  LLSPAIGDPISVPTQDMLMGLYVLTSGTRRGICANRYNPCNRKNYQNERIDDNNYKYTKE 578

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            P+F +SYDA+GAYRQKRI LDSPLWLRW+LDQRVIASRE P+EV YES+GTYHE+YG YL
Sbjct: 579  PFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYL 638

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVR+VKKEI CIYIRTTVG+I+ YREIEEA+QGFCRACS  T
Sbjct: 639  IVRSVKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYDT 680


>ref|YP_008993511.1| RNA polymerase beta (chloroplast) [Magnolia liliifera]
          Length = 685

 Score =  408 bits (1048), Expect = e-111
 Identities = 197/222 (88%), Positives = 207/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 464  HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 523

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDML+GLY+LTIGNRRGIC+NRYNPCN RNYQNE  DNN Y   KE
Sbjct: 524  LLSPAIGDPISVPTQDMLIGLYILTIGNRRGICSNRYNPCNRRNYQNETVDNNKYTKEKE 583

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVIASREVP+EVQYES+GTYHE+YG YL
Sbjct: 584  PYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYL 643

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVR+VKKEI CIYIRTTVG+I+FYREIEEA+QGFCRA S  T
Sbjct: 644  IVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYSYDT 685


>gb|AEX98242.1| RNA polymerase beta' subunit (chloroplast) [Magnolia liliiflora]
          Length = 681

 Score =  408 bits (1048), Expect = e-111
 Identities = 197/222 (88%), Positives = 207/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 460  HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 519

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDML+GLY+LTIGNRRGIC+NRYNPCN RNYQNE  DNN Y   KE
Sbjct: 520  LLSPAIGDPISVPTQDMLIGLYILTIGNRRGICSNRYNPCNRRNYQNETVDNNKYTKEKE 579

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGAYRQKRI LDSPLWLRWRLDQRVIASREVP+EVQYES+GTYHE+YG YL
Sbjct: 580  PYFCSSYDALGAYRQKRINLDSPLWLRWRLDQRVIASREVPIEVQYESLGTYHEIYGHYL 639

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVR+VKKEI CIYIRTTVG+I+FYREIEEA+QGFCRA S  T
Sbjct: 640  IVRSVKKEILCIYIRTTVGHISFYREIEEAIQGFCRAYSYDT 681


>gb|AAZ03988.1| RNA polymerase beta' chain [Ranunculus macranthus]
          Length = 688

 Score =  408 bits (1048), Expect = e-111
 Identities = 197/222 (88%), Positives = 207/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSHMN
Sbjct: 467  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHIPLSLEAQAEARLLMFSHMN 526

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNP N+RN QNEK D+NN+ YTKE
Sbjct: 527  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNHRNSQNEKIDDNNHTYTKE 586

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGA+RQKRI LDSPLWLRWRLDQRVIA REVP+EVQ ES GTYHE+YG YL
Sbjct: 587  PYFCSSYDALGAFRQKRINLDSPLWLRWRLDQRVIAPREVPIEVQCESFGTYHEIYGHYL 646

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVRNV K+IFCI IRTTVG I+FYREIEEA+QGFCRACS  T
Sbjct: 647  IVRNVNKKIFCIDIRTTVGLISFYREIEEAIQGFCRACSYST 688


>ref|YP_001004177.1| RNA polymerase beta' subunit [Ranunculus macranthus]
            gi|212288309|sp|A1XGM9.1|RPOC1_RANMC RecName:
            Full=DNA-directed RNA polymerase subunit beta'; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta'; Short=RNA polymerase subunit beta'
            gi|85540795|gb|ABC70747.1| RNA polymerase beta' subunit
            [Ranunculus macranthus]
          Length = 680

 Score =  408 bits (1048), Expect = e-111
 Identities = 197/222 (88%), Positives = 207/222 (93%)
 Frame = -1

Query: 753  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 574
            HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVH+PLSLEAQAEARLLMFSHMN
Sbjct: 459  HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHIPLSLEAQAEARLLMFSHMN 518

Query: 573  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPCNYRNYQNEKSDNNNYKYTKE 394
            LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNP N+RN QNEK D+NN+ YTKE
Sbjct: 519  LLSPAIGDPISVPTQDMLMGLYVLTIGNRRGICANRYNPWNHRNSQNEKIDDNNHTYTKE 578

Query: 393  PYFSSSYDALGAYRQKRIKLDSPLWLRWRLDQRVIASREVPLEVQYESVGTYHEVYGRYL 214
            PYF SSYDALGA+RQKRI LDSPLWLRWRLDQRVIA REVP+EVQ ES GTYHE+YG YL
Sbjct: 579  PYFCSSYDALGAFRQKRINLDSPLWLRWRLDQRVIAPREVPIEVQCESFGTYHEIYGHYL 638

Query: 213  IVRNVKKEIFCIYIRTTVGNIAFYREIEEAVQGFCRACSCGT 88
            IVRNV K+IFCI IRTTVG I+FYREIEEA+QGFCRACS  T
Sbjct: 639  IVRNVNKKIFCIDIRTTVGLISFYREIEEAIQGFCRACSYST 680