BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00041763
         (402 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004293229.1| PREDICTED: putative pentatricopeptide repeat...   110   8e-28
gb|EXC07317.1| hypothetical protein L484_021225 [Morus notabilis]     105   3e-26
ref|XP_006473439.1| PREDICTED: putative pentatricopeptide repeat...   102   6e-25
ref|XP_006434922.1| hypothetical protein CICLE_v10003562mg [Citr...   102   1e-24
ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat...   104   3e-24
ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat...   104   3e-24
emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]   105   3e-23
ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat...   105   3e-23
emb|CBI19634.3| unnamed protein product [Vitis vinifera]              105   2e-22
ref|XP_006366458.1| PREDICTED: putative pentatricopeptide repeat...   100   4e-22
ref|XP_004238594.1| PREDICTED: putative pentatricopeptide repeat...    98   7e-22
ref|XP_006375054.1| hypothetical protein POPTR_0014s03970g [Popu...    97   8e-21
ref|XP_006856131.1| hypothetical protein AMTR_s00059p00156460 [A...    97   2e-20
ref|XP_007017448.1| Pentatricopeptide repeat superfamily protein...   101   1e-19
ref|NP_173362.2| pentatricopeptide repeat-containing protein [Ar...    96   7e-18
ref|XP_006416521.1| hypothetical protein EUTSA_v10006776mg [Eutr...    94   1e-17
ref|XP_002890327.1| pentatricopeptide repeat-containing protein ...    94   2e-17
ref|XP_006306730.1| hypothetical protein CARUB_v10008259mg [Caps...    93   4e-17
ref|XP_002510334.1| pentatricopeptide repeat-containing protein,...    90   4e-16
gb|AAF82237.1|AC069143_13 Contains a weak similarity to an actin...    89   8e-16

>ref|XP_004293229.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Fragaria vesca subsp. vesca]
          Length = 884

 Score =  110 bits (275), Expect(2) = 8e-28
 Identities = 56/93 (60%), Positives = 68/93 (73%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           S  FS+ +LN+VLR L+LN NACL  FK ASKQQ FR   KSYC IVHIL RAR +D+ R
Sbjct: 54  SFEFSDQLLNSVLRNLKLNPNACLAFFKLASKQQKFRPNLKSYCIIVHILSRARLYDQTR 113

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
            YLNELV +C S   +  V++ELV V+REF+FS
Sbjct: 114 AYLNELVALCKSNYPVFVVWNELVRVYREFNFS 146



 Score = 38.9 bits (89), Expect(2) = 8e-28
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -3

Query: 400 YKLNQPELLDRICRILILERFGIINQL 320
           YKL +PELLDRI R+L+L+R+  +N L
Sbjct: 27  YKLTRPELLDRISRLLVLQRYDALNNL 53


>gb|EXC07317.1| hypothetical protein L484_021225 [Morus notabilis]
          Length = 921

 Score =  105 bits (261), Expect(2) = 3e-26
 Identities = 52/93 (55%), Positives = 69/93 (74%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           S  FS+++L++VLR+L+LN NACL  F+ ASK+QNFR   KSYC IVHIL RAR +DE R
Sbjct: 62  SFQFSDELLDSVLRKLKLNPNACLGFFRLASKRQNFRPNLKSYCVIVHILSRARMYDETR 121

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
            +L ELV +C +  S   +++ELV V+ EFSFS
Sbjct: 122 AHLKELVSLCRNNYSAFTIWNELVRVYEEFSFS 154



 Score = 38.9 bits (89), Expect(2) = 3e-26
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = -3

Query: 400 YKLNQPELLDRICRILILERFGIINQL 320
           YKL +PEL+DRI R+L+L+RF  I++L
Sbjct: 35  YKLTRPELVDRISRLLVLQRFNAIDEL 61


>ref|XP_006473439.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like isoform X1 [Citrus sinensis]
           gi|568838908|ref|XP_006473440.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X2 [Citrus sinensis]
           gi|568838910|ref|XP_006473441.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X3 [Citrus sinensis]
           gi|568838912|ref|XP_006473442.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X4 [Citrus sinensis]
           gi|568838914|ref|XP_006473443.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X5 [Citrus sinensis]
           gi|568838916|ref|XP_006473444.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X6 [Citrus sinensis]
           gi|568838918|ref|XP_006473445.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X7 [Citrus sinensis]
          Length = 955

 Score =  102 bits (253), Expect(2) = 6e-25
 Identities = 51/93 (54%), Positives = 69/93 (74%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           S +FS+D+L++VL++LRLN +A L  F+ ASKQQ FR   K YCKIVHIL RAR FDE R
Sbjct: 63  SFDFSDDLLDSVLQKLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETR 122

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
            +L ELVG+C +  +   ++DELV  ++EF+FS
Sbjct: 123 AFLYELVGLCKNNYAGFLIWDELVRAYKEFAFS 155



 Score = 37.7 bits (86), Expect(2) = 6e-25
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -3

Query: 400 YKLNQPELLDRICRILILERFGIINQL 320
           Y+L+QPELLDRI R+L+L RF  ++ L
Sbjct: 36  YRLSQPELLDRITRLLVLGRFDAVDNL 62


>ref|XP_006434922.1| hypothetical protein CICLE_v10003562mg [Citrus clementina]
           gi|557537044|gb|ESR48162.1| hypothetical protein
           CICLE_v10003562mg [Citrus clementina]
          Length = 955

 Score =  102 bits (255), Expect(2) = 1e-24
 Identities = 51/93 (54%), Positives = 69/93 (74%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           S +FS+D+L++VL +LRLN +A L  F+ ASKQQ FR   K YCKIVHIL RAR FDE R
Sbjct: 63  SFDFSDDLLDSVLHKLRLNPDASLGFFQLASKQQKFRPNIKCYCKIVHILSRARMFDETR 122

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
            +L+ELVG+C +  +   ++DELV  ++EF+FS
Sbjct: 123 AFLDELVGLCKNNYAGFLIWDELVRAYKEFAFS 155



 Score = 36.2 bits (82), Expect(2) = 1e-24
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = -3

Query: 400 YKLNQPELLDRICRILILERFGIINQL 320
           Y+L++PELLDRI R+L+L RF  ++ L
Sbjct: 36  YRLSRPELLDRITRLLVLGRFDAVDNL 62


>ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  104 bits (259), Expect(2) = 3e-24
 Identities = 54/93 (58%), Positives = 66/93 (70%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           S +FS ++++ VLR LRLN +A L  FK ASKQ  FR    SYCKIVHIL RAR + E R
Sbjct: 93  SFSFSNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMYKEVR 152

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           +YLNELV +C +    S V+DELV V+REFSFS
Sbjct: 153 VYLNELVVLCKNNYIASAVWDELVSVYREFSFS 185



 Score = 33.1 bits (74), Expect(2) = 3e-24
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = -3

Query: 397 KLNQPELLDRICRILILERFGIINQL 320
           KL+QP+L+DRI R+L+L RF  +  L
Sbjct: 67  KLSQPDLVDRISRLLVLRRFDALANL 92


>ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score =  104 bits (259), Expect(2) = 3e-24
 Identities = 54/93 (58%), Positives = 66/93 (70%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           S +FS ++++ VLR LRLN +A L  FK ASKQ  FR    SYCKIVHIL RAR + E R
Sbjct: 93  SFSFSNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMYKEVR 152

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           +YLNELV +C +    S V+DELV V+REFSFS
Sbjct: 153 VYLNELVVLCKNNYIASAVWDELVSVYREFSFS 185



 Score = 33.1 bits (74), Expect(2) = 3e-24
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = -3

Query: 397 KLNQPELLDRICRILILERFGIINQL 320
           KL+QP+L+DRI R+L+L RF  +  L
Sbjct: 67  KLSQPDLVDRISRLLVLRRFDALANL 92


>emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  105 bits (263), Expect(2) = 3e-23
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = -1

Query: 321 FSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEARIYL 142
           FS+DI++AVLR LRLN  A L  F++ SKQQNFR   KSYCK+VHIL R R +DE R YL
Sbjct: 66  FSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYL 125

Query: 141 NELVGICLSMSSISFVFDELVDVHREFSFS 52
           N+LV +C      + ++DELV V+REF+FS
Sbjct: 126 NQLVDLCKFKDRGNVIWDELVGVYREFAFS 155



 Score = 28.1 bits (61), Expect(2) = 3e-23
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 385 PELLDRICRILILERFGIINQL 320
           PEL+ RICR+++L R   I++L
Sbjct: 41  PELVSRICRLVLLRRCNAISKL 62


>ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  105 bits (263), Expect(2) = 3e-23
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = -1

Query: 321 FSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEARIYL 142
           FS+DI++AVLR LRLN  A L  F++ SKQQNFR   KSYCK+VHIL R R +DE R YL
Sbjct: 66  FSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYL 125

Query: 141 NELVGICLSMSSISFVFDELVDVHREFSFS 52
           N+LV +C      + ++DELV V+REF+FS
Sbjct: 126 NQLVDLCKFKDRGNVIWDELVGVYREFAFS 155



 Score = 28.1 bits (61), Expect(2) = 3e-23
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 385 PELLDRICRILILERFGIINQL 320
           PEL+ RICR+++L R   I++L
Sbjct: 41  PELVSRICRLVLLRRCNAISKL 62


>emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  105 bits (263), Expect(2) = 2e-22
 Identities = 52/90 (57%), Positives = 66/90 (73%)
 Frame = -1

Query: 321 FSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEARIYL 142
           FS+DI++AVLR LRLN  A L  F++ SKQQNFR   KSYCK+VHIL R R +DE R YL
Sbjct: 32  FSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYL 91

Query: 141 NELVGICLSMSSISFVFDELVDVHREFSFS 52
           N+LV +C      + ++DELV V+REF+FS
Sbjct: 92  NQLVDLCKFKDRGNVIWDELVGVYREFAFS 121



 Score = 25.8 bits (55), Expect(2) = 2e-22
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 394 LNQPELLDRICRILILERFGIINQL 320
           + QP  + RICR+++L R   I++L
Sbjct: 4   VRQPLAISRICRLVLLRRCNAISKL 28


>ref|XP_006366458.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like isoform X1 [Solanum tuberosum]
           gi|565401957|ref|XP_006366459.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X2 [Solanum tuberosum]
           gi|565401959|ref|XP_006366460.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X3 [Solanum tuberosum]
           gi|565401961|ref|XP_006366461.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein
           At1g19290-like isoform X4 [Solanum tuberosum]
          Length = 843

 Score =  100 bits (249), Expect(2) = 4e-22
 Identities = 49/91 (53%), Positives = 69/91 (75%)
 Frame = -1

Query: 324 NFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEARIY 145
           +FS +++++VL +L+L+ NA LH FK AS +Q FR +  SYC+IVHIL R R FDEAR Y
Sbjct: 56  DFSNNLVDSVLVKLKLHPNASLHFFKLASGRQFFRPHVVSYCRIVHILSRGRMFDEARFY 115

Query: 144 LNELVGICLSMSSISFVFDELVDVHREFSFS 52
           L+EL+ +  +  S+SFV+DEL+ V+REF FS
Sbjct: 116 LSELLELSRNKKSVSFVWDELMTVYREFKFS 146



 Score = 29.6 bits (65), Expect(2) = 4e-22
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -3

Query: 391 NQP-ELLDRICRILILERFGIINQL 320
           N+P EL D+ICR+LIL+R+  ++ L
Sbjct: 29  NRPHELADKICRLLILQRYTAVDSL 53


>ref|XP_004238594.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Solanum lycopersicum]
          Length = 843

 Score = 97.8 bits (242), Expect(2) = 7e-22
 Identities = 48/91 (52%), Positives = 68/91 (74%)
 Frame = -1

Query: 324 NFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEARIY 145
           +FS +++++VL +L+L+ +A LH FK AS +Q FR +  SYC+IVHIL R R FDEAR Y
Sbjct: 56  DFSNNLVDSVLVKLKLHPDASLHFFKLASGRQFFRPHVVSYCRIVHILSRGRMFDEARFY 115

Query: 144 LNELVGICLSMSSISFVFDELVDVHREFSFS 52
           L+EL+ +  +   +SFV+DELV V+REF FS
Sbjct: 116 LSELLELSRNKKPVSFVWDELVTVYREFKFS 146



 Score = 31.6 bits (70), Expect(2) = 7e-22
 Identities = 14/25 (56%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = -3

Query: 391 NQP-ELLDRICRILILERFGIINQL 320
           N+P EL DRICR+LIL+R+  ++ L
Sbjct: 29  NRPHELADRICRLLILQRYAAVDSL 53


>ref|XP_006375054.1| hypothetical protein POPTR_0014s03970g [Populus trichocarpa]
           gi|550323368|gb|ERP52851.1| hypothetical protein
           POPTR_0014s03970g [Populus trichocarpa]
          Length = 948

 Score = 97.1 bits (240), Expect(2) = 8e-21
 Identities = 45/93 (48%), Positives = 66/93 (70%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           + +FS+ +++++L +L+LN  ACL+ F+ A+KQ NF    KSYCK+VHIL RAR +DE R
Sbjct: 56  NFHFSDSLVDSILVKLKLNPEACLNFFQLAAKQPNFTPSVKSYCKLVHILSRARMYDETR 115

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
            YLNEL  +C +  +   V DELV V+++F FS
Sbjct: 116 SYLNELASLCKNNYTSFLVLDELVRVYKDFKFS 148



 Score = 28.9 bits (63), Expect(2) = 8e-21
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 394 LNQPELLDRICRILILERFGIINQL 320
           L++PEL +RI R+LIL RF  +  L
Sbjct: 31  LSRPELHERISRLLILRRFDALENL 55


>ref|XP_006856131.1| hypothetical protein AMTR_s00059p00156460 [Amborella trichopoda]
           gi|548859990|gb|ERN17598.1| hypothetical protein
           AMTR_s00059p00156460 [Amborella trichopoda]
          Length = 962

 Score = 97.1 bits (240), Expect(2) = 2e-20
 Identities = 51/93 (54%), Positives = 65/93 (69%)
 Frame = -1

Query: 330 SINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEAR 151
           S +FS+++++ VLR+LRL   A L+ FK A +QQ FR  +  YCKI+HIL RA+ F EAR
Sbjct: 78  SFDFSDELVDGVLRKLRLRPVASLNFFKIAQQQQKFRPNSLCYCKIIHILSRAKMFSEAR 137

Query: 150 IYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
            YLNELV    S  S S VF EL+DV +EFSFS
Sbjct: 138 QYLNELVSFSTSKCSDSLVFYELLDVFKEFSFS 170



 Score = 27.7 bits (60), Expect(2) = 2e-20
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 394 LNQPELLDRICRILILERFGIINQL 320
           L Q +L++ +CRILIL R   I+ L
Sbjct: 53  LTQTQLIETLCRILILNRLEAISHL 77


>ref|XP_007017448.1| Pentatricopeptide repeat superfamily protein [Theobroma cacao]
           gi|508722776|gb|EOY14673.1| Pentatricopeptide repeat
           superfamily protein [Theobroma cacao]
          Length = 937

 Score =  101 bits (251), Expect = 1e-19
 Identities = 55/102 (53%), Positives = 71/102 (69%)
 Frame = -1

Query: 357 Y*FLRDLASSINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILL 178
           Y  L DL  S +FS ++L++VLR L+LN NA  + FK ASKQQ FR    SYC IVHIL 
Sbjct: 57  YNALNDL--SFDFSNELLDSVLRSLKLNPNASFYFFKLASKQQKFRPNITSYCIIVHILS 114

Query: 177 RARRFDEARIYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           RAR +DE R +L+ELVG+C +  S   V++ELV V++EF FS
Sbjct: 115 RARMYDETRAHLSELVGLCKNKYSSFLVWNELVRVYKEFKFS 156


>ref|NP_173362.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|193806505|sp|Q9LN69.2|PPR50_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At1g19290 gi|332191705|gb|AEE29826.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 904

 Score = 95.5 bits (236), Expect = 7e-18
 Identities = 55/102 (53%), Positives = 70/102 (68%)
 Frame = -1

Query: 357 Y*FLRDLASSINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILL 178
           Y  L DL  S++FS+++LN++LRRLRLN  ACL IF  ASKQQ FR   K+YCK+VHIL 
Sbjct: 58  YEALHDL--SLDFSDELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILS 115

Query: 177 RARRFDEARIYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           RAR + + + YL ELV +     S   V+ ELV V +EFSFS
Sbjct: 116 RARNYQQTKSYLCELVAL---NHSGFVVWGELVRVFKEFSFS 154


>ref|XP_006416521.1| hypothetical protein EUTSA_v10006776mg [Eutrema salsugineum]
           gi|557094292|gb|ESQ34874.1| hypothetical protein
           EUTSA_v10006776mg [Eutrema salsugineum]
          Length = 856

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 56/102 (54%), Positives = 69/102 (67%)
 Frame = -1

Query: 357 Y*FLRDLASSINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILL 178
           Y  L DL  SI+FS+ +LN++LR LRLN  ACL IF  ASKQQ FR    +YCK+VHIL 
Sbjct: 58  YDALHDL--SIDFSDKLLNSLLRNLRLNPEACLEIFNLASKQQKFRPDYTAYCKMVHILS 115

Query: 177 RARRFDEARIYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           RAR +D+ R YL ELV +     S   V+DELV V ++FSFS
Sbjct: 116 RARMYDKTRTYLCELVAL---NHSGFVVWDELVRVFKKFSFS 154


>ref|XP_002890327.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336169|gb|EFH66586.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 903

 Score = 94.0 bits (232), Expect = 2e-17
 Identities = 54/102 (52%), Positives = 70/102 (68%)
 Frame = -1

Query: 357 Y*FLRDLASSINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILL 178
           Y  L DL  S++FS+++LN++LRRLRLN  AC+ IF  ASKQQ FR   K+YCK+VHIL 
Sbjct: 58  YEALHDL--SLDFSDELLNSILRRLRLNPEACVEIFNLASKQQKFRPDYKAYCKMVHILS 115

Query: 177 RARRFDEARIYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           RAR + + + YL ELV +     S   V+ ELV V +EFSFS
Sbjct: 116 RARNYGQTKSYLCELVAL---NHSGFVVWGELVRVFKEFSFS 154


>ref|XP_006306730.1| hypothetical protein CARUB_v10008259mg [Capsella rubella]
           gi|482575441|gb|EOA39628.1| hypothetical protein
           CARUB_v10008259mg [Capsella rubella]
          Length = 903

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 54/102 (52%), Positives = 69/102 (67%)
 Frame = -1

Query: 357 Y*FLRDLASSINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILL 178
           Y  L DL  S++FS+  LN++LRRLRLN  ACL +F  ASKQQ FR   K+YCK+VHIL 
Sbjct: 58  YDALHDL--SVDFSDKFLNSLLRRLRLNPEACLELFNLASKQQKFRPDYKAYCKMVHILS 115

Query: 177 RARRFDEARIYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           RAR +D+ + Y+ ELV +     S   V+ ELV V +EFSFS
Sbjct: 116 RARLYDQTKSYICELVAL---NHSGFVVWAELVRVFKEFSFS 154


>ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551035|gb|EEF52521.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 947

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 52/102 (50%), Positives = 66/102 (64%)
 Frame = -1

Query: 357 Y*FLRDLASSINFSEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILL 178
           Y  L+DL  +  FS+ IL++VL +L+ N  A LH FK ASKQ NFR    S+CK+VHIL 
Sbjct: 48  YHALKDL--NFQFSDYILDSVLLKLKFNPIASLHFFKLASKQSNFRPNVNSHCKLVHILS 105

Query: 177 RARRFDEARIYLNELVGICLSMSSISFVFDELVDVHREFSFS 52
           RAR +DE R YLNELV    +  S   V++ELV V  +F FS
Sbjct: 106 RARMYDETRSYLNELVTPSKNNYSSLVVWNELVRVFEDFKFS 147


>gb|AAF82237.1|AC069143_13 Contains a weak similarity to an actin-binding LIM protein, isoform
           a, from Homo sapiens gi|4504999 and contains multiple
           LIM proteins PF|00412 and PPR repeats PF|01535. EST
           gb|N96780 comes from this gene, partial [Arabidopsis
           thaliana]
          Length = 763

 Score = 88.6 bits (218), Expect = 8e-16
 Identities = 48/89 (53%), Positives = 62/89 (69%)
 Frame = -1

Query: 318 SEDILNAVLRRLRLNSNACLHIFKWASKQQNFRHYAKSYCKIVHILLRARRFDEARIYLN 139
           ++++LN++LRRLRLN  ACL IF  ASKQQ FR   K+YCK+VHIL RAR + + + YL 
Sbjct: 580 ADELLNSILRRLRLNPEACLEIFNLASKQQKFRPDYKAYCKMVHILSRARNYQQTKSYLC 639

Query: 138 ELVGICLSMSSISFVFDELVDVHREFSFS 52
           ELV +     S   V+ ELV V +EFSFS
Sbjct: 640 ELVAL---NHSGFVVWGELVRVFKEFSFS 665