BLASTX nr result
ID: Cocculus23_contig00040534
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00040534
(227 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCH50976.1| T4.15 [Malus x robusta] 43 1e-08
gb|ABB00038.1| reverse transcriptase family member [Glycine max] 42 1e-07
gb|AAT40504.2| Polyprotein, putative [Solanum demissum] 42 4e-07
ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596... 41 5e-07
gb|AEJ72569.1| putative reverse transcriptase family member [Mal... 42 1e-06
gb|AAT40500.1| Putative reverse transcriptase, identical [Solanu... 39 2e-06
gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis] 39 2e-06
ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis] g... 41 4e-06
ref|XP_003588515.1| hypothetical protein MTR_1g008050 [Medicago ... 39 5e-06
>emb|CCH50976.1| T4.15 [Malus x robusta]
Length = 986
Score = 42.7 bits (99), Expect(2) = 1e-08
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRK 202
VA I KMRENQLRWFG QRR DA IR+
Sbjct: 902 VAEIQGKMRENQLRWFGHVQRRPTDAPIRR 931
Score = 42.0 bits (97), Expect(2) = 1e-08
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 4 QHVSKINVIKIRMLIWICGKTLKDIIPNEQIR 99
QHV K+ V ++RML W+CG T KD I NE IR
Sbjct: 866 QHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIR 897
>gb|ABB00038.1| reverse transcriptase family member [Glycine max]
Length = 377
Score = 42.0 bits (97), Expect(2) = 1e-07
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1
Query: 4 QHVSKINVIKIRMLIWICGKTLKDIIPNEQIRK 102
QH +K+ V ++RML W+CGKT +D I NE IR+
Sbjct: 258 QHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRE 290
Score = 39.3 bits (90), Expect(2) = 1e-07
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRK 202
VA I +KM EN+LRWFG +RR +D+V+R+
Sbjct: 294 VAPIVEKMVENRLRWFGHVERRPVDSVLRR 323
>gb|AAT40504.2| Polyprotein, putative [Solanum demissum]
Length = 868
Score = 41.6 bits (96), Expect(2) = 4e-07
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRKRYLLTING 226
VAS+ DK+RE +LRWFG +RR DA +R+ ++ + G
Sbjct: 610 VASVVDKLREARLRWFGHVKRRSADAPVRRCEVMVVEG 647
Score = 38.1 bits (87), Expect(2) = 4e-07
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 7 HVSKINVIKIRMLIWICGKTLKDIIPNEQIRK 102
HV K++V ++RML W+CG T D I NE IR+
Sbjct: 575 HVHKMHVAEMRMLRWMCGHTRSDKIRNEVIRE 606
>ref|XP_006361364.1| PREDICTED: uncharacterized protein LOC102596609 [Solanum tuberosum]
Length = 278
Score = 40.8 bits (94), Expect(2) = 5e-07
Identities = 19/38 (50%), Positives = 26/38 (68%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRKRYLLTING 226
VAS+ DK+RE +LRWFG +RR DA +R+ L + G
Sbjct: 197 VASVVDKLREARLRWFGHVRRRCADAPVRRCEGLVVEG 234
Score = 38.5 bits (88), Expect(2) = 5e-07
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 7 HVSKINVIKIRMLIWICGKTLKDIIPNEQIRK 102
HV K++V ++RML W+CG T D I NE IR+
Sbjct: 162 HVQKMHVAEMRMLRWMCGHTRSDKIRNEVIRE 193
>gb|AEJ72569.1| putative reverse transcriptase family member [Malus domestica]
Length = 212
Score = 42.0 bits (97), Expect(2) = 1e-06
Identities = 19/32 (59%), Positives = 23/32 (71%)
Frame = +1
Query: 4 QHVSKINVIKIRMLIWICGKTLKDIIPNEQIR 99
QHV K+ V ++RML W+CG T KD I NE IR
Sbjct: 92 QHVHKMGVAEMRMLRWMCGHTRKDKIRNEDIR 123
Score = 35.8 bits (81), Expect(2) = 1e-06
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRK 202
VA I MREN+LRWFG QRR A IR+
Sbjct: 128 VAEIEGNMRENRLRWFGHVQRRPTYAPIRR 157
>gb|AAT40500.1| Putative reverse transcriptase, identical [Solanum demissum]
Length = 213
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRKRYLLTI 220
VAS+ DK+RE +LRWFG +RR DA +R+ ++ +
Sbjct: 142 VASVVDKLREARLRWFGHVKRRSADAPVRRCEVMVV 177
Score = 38.1 bits (87), Expect(2) = 2e-06
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 7 HVSKINVIKIRMLIWICGKTLKDIIPNEQIRK 102
HV K++V ++RML W+CG T D I NE IR+
Sbjct: 107 HVHKMHVAEMRMLRWMCGHTRSDKIRNEVIRE 138
>gb|EXB94379.1| E3 ubiquitin-protein ligase UPL6 [Morus notabilis]
Length = 1413
Score = 38.9 bits (89), Expect(2) = 2e-06
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 1 KQHVSKINVIKIRMLIWICGKTLKDIIPNEQIR 99
+QH+SK++V ++RML W+ G+T D I NE IR
Sbjct: 978 RQHISKMSVAEMRMLRWMSGQTRMDRIKNEVIR 1010
Score = 38.1 bits (87), Expect(2) = 2e-06
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIR 199
VA I DK+RE +LRWFG QRR ++A +R
Sbjct: 1015 VAPIEDKVREGRLRWFGHVQRRPLEAPVR 1043
>ref|WP_009187176.1| hypothetical protein [Cecembia lonarensis]
gi|405551390|gb|EKB47241.1| hypothetical protein
B879_04163 [Cecembia lonarensis LW9]
Length = 133
Score = 40.8 bits (94), Expect(2) = 4e-06
Identities = 19/30 (63%), Positives = 22/30 (73%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRK 202
VA I KMREN+LRWFG QRR DA +R+
Sbjct: 49 VAEIEGKMRENRLRWFGHVQRRPTDAPVRR 78
Score = 35.4 bits (80), Expect(2) = 4e-06
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +1
Query: 4 QHVSKINVIKIRMLIWICGKTLKDIIPNEQIR 99
QHV K+ V ++RML +CG T KD I NE I+
Sbjct: 13 QHVHKMGVAEMRMLRGMCGHTRKDKIRNEDIQ 44
>ref|XP_003588515.1| hypothetical protein MTR_1g008050 [Medicago truncatula]
gi|355477563|gb|AES58766.1| hypothetical protein
MTR_1g008050 [Medicago truncatula]
Length = 1675
Score = 38.5 bits (88), Expect(2) = 5e-06
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +1
Query: 4 QHVSKINVIKIRMLIWICGKTLKDIIPNEQIRK 102
QH SK++V ++RML W+ GKT +D I N+ IR+
Sbjct: 1277 QHESKVSVAEMRMLRWMSGKTRQDRIRNDTIRE 1309
Score = 37.4 bits (85), Expect(2) = 5e-06
Identities = 16/30 (53%), Positives = 23/30 (76%)
Frame = +2
Query: 113 VASIGDKMRENQLRWFGLAQRRLIDAVIRK 202
VA I +K+ EN+LRW G +RR +DAV+R+
Sbjct: 1313 VAPIVEKLVENRLRWLGHVERRPVDAVVRR 1342