BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00040211
         (544 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007025201.1| Pentatricopeptide repeat (PPR) superfamily p...    62   1e-19
ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containi...    62   4e-19
emb|CBI30808.3| unnamed protein product [Vitis vinifera]               62   4e-19
ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containi...    62   2e-18
ref|XP_006369868.1| hypothetical protein POPTR_0001s34330g [Popu...    58   8e-18
ref|XP_006467551.1| PREDICTED: pentatricopeptide repeat-containi...    58   2e-17
gb|EXB58304.1| hypothetical protein L484_015638 [Morus notabilis]      57   4e-17
ref|XP_002865191.1| pentatricopeptide repeat-containing protein ...    55   6e-17
ref|XP_006449607.1| hypothetical protein CICLE_v10018369mg [Citr...    58   7e-17
ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containi...    59   1e-15
ref|XP_007159542.1| hypothetical protein PHAVU_002G246300g [Phas...    58   4e-15
ref|XP_006282004.1| hypothetical protein CARUB_v10028231mg [Caps...    57   6e-15
ref|XP_006398338.1| hypothetical protein EUTSA_v10000805mg [Eutr...    55   1e-14
ref|XP_004504222.1| PREDICTED: pentatricopeptide repeat-containi...    55   1e-14
ref|XP_004233864.1| PREDICTED: pentatricopeptide repeat-containi...    55   3e-14
ref|XP_003629914.1| Pentatricopeptide repeat-containing protein ...    54   5e-14
ref|NP_199458.1| pentatricopeptide repeat-containing protein [Ar...    54   5e-14
ref|XP_006355631.1| PREDICTED: pentatricopeptide repeat-containi...    55   8e-14
ref|XP_006406136.1| hypothetical protein EUTSA_v10020066mg [Eutr...    57   1e-13
ref|XP_007038997.1| Tetratricopeptide repeat-like superfamily pr...    54   2e-13

>ref|XP_007025201.1| Pentatricopeptide repeat (PPR) superfamily protein [Theobroma
           cacao] gi|508780567|gb|EOY27823.1| Pentatricopeptide
           repeat (PPR) superfamily protein [Theobroma cacao]
          Length = 717

 Score = 62.4 bits (150), Expect(2) = 1e-19
 Identities = 42/84 (50%), Positives = 49/84 (58%), Gaps = 11/84 (13%)
 Frame = -3

Query: 344 WSTKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD 198
           +S +IYQKLD LGGKL      P     L      +K++   YHS RLA  FGLV     
Sbjct: 606 FSEEIYQKLDWLGGKLKEFGYVPDERFALHDVEDEQKQEMLSYHSERLAIAFGLVTTAGG 665

Query: 197 *IIRVMKNLQICGDCHSAIKLKLK 126
             I VMKNL++CGDCHSAIKL  K
Sbjct: 666 SAITVMKNLRVCGDCHSAIKLIAK 689



 Score = 59.7 bits (143), Expect(2) = 1e-19
 Identities = 29/42 (69%), Positives = 35/42 (83%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ SAAYVLLSN+YASAGRW+DV  +R+ MK+R IVKQP  S
Sbjct: 545 PHCSAAYVLLSNLYASAGRWSDVSRMRVRMKQRGIVKQPGCS 586


>ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score = 62.0 bits (149), Expect(2) = 4e-19
 Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 11/83 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD* 195
           S +IYQKL+ LGGKL      P     L      +K+    YHS RLA  FGL++  +  
Sbjct: 566 SDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGS 625

Query: 194 IIRVMKNLQICGDCHSAIKLKLK 126
            I VMKNL++CGDCHSAIKL  K
Sbjct: 626 TITVMKNLRVCGDCHSAIKLIAK 648



 Score = 58.5 bits (140), Expect(2) = 4e-19
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ S+AYVLLSN+YASA RW+DV  IR  MK+R I KQP RS
Sbjct: 504 PHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRS 545


>emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 62.0 bits (149), Expect(2) = 4e-19
 Identities = 40/83 (48%), Positives = 49/83 (59%), Gaps = 11/83 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD* 195
           S +IYQKL+ LGGKL      P     L      +K+    YHS RLA  FGL++  +  
Sbjct: 550 SDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGS 609

Query: 194 IIRVMKNLQICGDCHSAIKLKLK 126
            I VMKNL++CGDCHSAIKL  K
Sbjct: 610 TITVMKNLRVCGDCHSAIKLIAK 632



 Score = 58.5 bits (140), Expect(2) = 4e-19
 Identities = 28/42 (66%), Positives = 33/42 (78%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ S+AYVLLSN+YASA RW+DV  IR  MK+R I KQP RS
Sbjct: 488 PHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRS 529


>ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
           gi|449533166|ref|XP_004173548.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score = 62.0 bits (149), Expect(2) = 2e-18
 Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 11/83 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLTTPCMM---------LRLSRKKKCCLYHS*RLA--FGLVNMYKD* 195
           S KIYQKL+ LGGKL     +         +   +K++   YHS RLA  FGL++  +  
Sbjct: 602 SRKIYQKLEWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGS 661

Query: 194 IIRVMKNLQICGDCHSAIKLKLK 126
            I VMKNL+ICGDCH+A+KL  K
Sbjct: 662 TIIVMKNLRICGDCHNAVKLTSK 684



 Score = 55.8 bits (133), Expect(2) = 2e-18
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS----KGIK 371
           PN SAAY LLSN+YAS G+W +V  IR  MK+  I+KQP  S    KGIK
Sbjct: 540 PNCSAAYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIK 589


>ref|XP_006369868.1| hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
           gi|550348837|gb|ERP66437.1| hypothetical protein
           POPTR_0001s34330g [Populus trichocarpa]
          Length = 675

 Score = 58.2 bits (139), Expect(2) = 8e-18
 Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 11/83 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD* 195
           S +IY+KLD LG KL      P     L      +K++   +HS RLA  FGLV+  +  
Sbjct: 565 SERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGS 624

Query: 194 IIRVMKNLQICGDCHSAIKLKLK 126
            I VMKNL++CGDCHS IKL  K
Sbjct: 625 TITVMKNLRVCGDCHSVIKLMSK 647



 Score = 57.8 bits (138), Expect(2) = 8e-18
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           PN S+AYVLLSN+YASAGRW DV  +R+ MK+  +VKQP  S
Sbjct: 503 PNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSS 544


>ref|XP_006467551.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Citrus sinensis]
          Length = 696

 Score = 57.8 bits (138), Expect(2) = 2e-17
 Identities = 28/42 (66%), Positives = 34/42 (80%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ SAAYVLLSN+YASAGRW+DV  +R+ MK+  IVKQP  S
Sbjct: 524 PHCSAAYVLLSNLYASAGRWSDVSRLRVKMKQGGIVKQPGCS 565



 Score = 56.6 bits (135), Expect(2) = 2e-17
 Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLTT----PCMMLRL-----SRKKKCCLYHS*RLAFG--LVNMYKD* 195
           S KIY+KLD LGGKL      P     L      +K++   +HS RLA G  L+   +  
Sbjct: 586 SEKIYEKLDWLGGKLKEFGYCPERSYSLHDVEDEQKEEMLSFHSERLAIGFALITTVEGS 645

Query: 194 IIRVMKNLQICGDCHSAIKL 135
            I VMKNL++CGDCH AIKL
Sbjct: 646 TITVMKNLRVCGDCHHAIKL 665


>gb|EXB58304.1| hypothetical protein L484_015638 [Morus notabilis]
          Length = 694

 Score = 57.0 bits (136), Expect(2) = 4e-17
 Identities = 40/83 (48%), Positives = 47/83 (56%), Gaps = 11/83 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD* 195
           S KIYQKLD LG KL      P     L      +K++    HS RLA  F LV+  +  
Sbjct: 584 SEKIYQKLDWLGVKLKEFGYVPDQQFALHDVEAEQKEEMLSSHSERLAIVFALVSTAEGS 643

Query: 194 IIRVMKNLQICGDCHSAIKLKLK 126
            I VMKNL++CGDCHSAIKL  K
Sbjct: 644 TITVMKNLRVCGDCHSAIKLIAK 666



 Score = 56.6 bits (135), Expect(2) = 4e-17
 Identities = 27/42 (64%), Positives = 32/42 (76%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ SAAYVLLSN+YASA RW+DV  +R +MK   IVKQP  S
Sbjct: 522 PHCSAAYVLLSNIYASANRWSDVSRVRETMKRNGIVKQPGSS 563


>ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311026|gb|EFH41450.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 697

 Score = 54.7 bits (130), Expect(3) = 6e-17
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = -1

Query: 502 SSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           SSAAYVLLSN+YASAGRW+ V  +R+ MK++ I+K+P  S
Sbjct: 529 SSAAYVLLSNIYASAGRWSSVSKLRVKMKQKGIMKKPGSS 568



 Score = 47.4 bits (111), Expect(3) = 6e-17
 Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
 Frame = -3

Query: 266 RKKKCCLYHS*RLA--FGLVNMYKD*IIRVMKNLQICGDCHSAIKL 135
           +K++   YHS RLA  FGL+N  +   + VMKNL++C DCH+ IKL
Sbjct: 621 QKEEMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHTVIKL 666



 Score = 30.8 bits (68), Expect(3) = 6e-17
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
 Frame = -2

Query: 384 VKGSRHEFLHGDSME-----------HENLPKA*HIRWETNDTLHDVKAEQKEEML 250
           ++G +HEF  GD               E L +  ++  +    LHDV+ EQKEEML
Sbjct: 572 IRGKKHEFFSGDRPHCLRIFEKLEFLREKLKELGYVP-DYRSALHDVEDEQKEEML 626


>ref|XP_006449607.1| hypothetical protein CICLE_v10018369mg [Citrus clementina]
           gi|557552218|gb|ESR62847.1| hypothetical protein
           CICLE_v10018369mg [Citrus clementina]
          Length = 652

 Score = 57.8 bits (138), Expect(2) = 7e-17
 Identities = 28/42 (66%), Positives = 34/42 (80%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ SAAYVLLSN+YASAGRW+DV  +R+ MK+  IVKQP  S
Sbjct: 480 PHCSAAYVLLSNLYASAGRWSDVSRLRVKMKQGGIVKQPGCS 521



 Score = 55.1 bits (131), Expect(2) = 7e-17
 Identities = 36/80 (45%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLTT----PCMMLRL-----SRKKKCCLYHS*RLAFG--LVNMYKD* 195
           S KIY++LD LGGKL      P     L      +K++   +HS RLA G  L+   +  
Sbjct: 542 SEKIYERLDWLGGKLKEFGYCPERSYSLHDVEDEQKEEMLSFHSERLAIGFALITTAEGS 601

Query: 194 IIRVMKNLQICGDCHSAIKL 135
            I VMKNL++CGDCH AIKL
Sbjct: 602 TITVMKNLRVCGDCHHAIKL 621


>ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score = 58.9 bits (141), Expect(2) = 1e-15
 Identities = 38/81 (46%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
 Frame = -3

Query: 335 KIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD*II 189
           KIYQKL+ LG KL      P     L      +K++   YHS RLA  FGL++  +   I
Sbjct: 613 KIYQKLEWLGVKLKELGYVPDQQFALHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAI 672

Query: 188 RVMKNLQICGDCHSAIKLKLK 126
            VMKNL++CGDCH+AIKL  K
Sbjct: 673 TVMKNLRVCGDCHNAIKLMAK 693



 Score = 49.7 bits (117), Expect(2) = 1e-15
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ SAAYVLLSN+YAS+ RW +V  IR  MK   +VK+P  S
Sbjct: 549 PDCSAAYVLLSNLYASSSRWAEVALIRRKMKHNGVVKKPGSS 590


>ref|XP_007159542.1| hypothetical protein PHAVU_002G246300g [Phaseolus vulgaris]
           gi|561032957|gb|ESW31536.1| hypothetical protein
           PHAVU_002G246300g [Phaseolus vulgaris]
          Length = 708

 Score = 57.8 bits (138), Expect(2) = 4e-15
 Identities = 37/78 (47%), Positives = 47/78 (60%), Gaps = 11/78 (14%)
 Frame = -3

Query: 335 KIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD*II 189
           KIYQKL+ LG KL      P     L      +K++   YHS RLA  FGL++  +   I
Sbjct: 600 KIYQKLEWLGMKLKESGYVPDQQFALHDVETEQKEEILSYHSERLAIAFGLLSTVEGSTI 659

Query: 188 RVMKNLQICGDCHSAIKL 135
            VMKNL++CGDCH+AIKL
Sbjct: 660 TVMKNLRVCGDCHTAIKL 677



 Score = 48.9 bits (115), Expect(2) = 4e-15
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ SAAYVL+SN++AS+ RW +V  IR  MK   +VKQP  S
Sbjct: 536 PDCSAAYVLMSNLFASSSRWAEVALIRKKMKRNGVVKQPGSS 577


>ref|XP_006282004.1| hypothetical protein CARUB_v10028231mg [Capsella rubella]
           gi|482550708|gb|EOA14902.1| hypothetical protein
           CARUB_v10028231mg [Capsella rubella]
          Length = 696

 Score = 57.0 bits (136), Expect(2) = 6e-15
 Identities = 25/41 (60%), Positives = 35/41 (85%)
 Frame = -1

Query: 505 NSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           NSSAAY+LLSN+YASAGRW++V  +R+ MK++ I+K+P  S
Sbjct: 527 NSSAAYILLSNIYASAGRWSNVSKLRVKMKQKGIMKKPGSS 567



 Score = 49.3 bits (116), Expect(2) = 6e-15
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 11/78 (14%)
 Frame = -3

Query: 335 KIYQKLDTLGGKLT---------TPCMMLRLSRKKKCCLYHS*RLA--FGLVNMYKD*II 189
           +IY+KL+ L  KL          +    +   +K++   YHS RLA  FGL+N  +   I
Sbjct: 588 RIYEKLEFLKEKLKGLGYVTDYRSALHDVDNEQKEEMLWYHSERLAIAFGLINTVEGSTI 647

Query: 188 RVMKNLQICGDCHSAIKL 135
            VMKNL++C DCHS +KL
Sbjct: 648 TVMKNLRVCEDCHSVVKL 665


>ref|XP_006398338.1| hypothetical protein EUTSA_v10000805mg [Eutrema salsugineum]
           gi|557099427|gb|ESQ39791.1| hypothetical protein
           EUTSA_v10000805mg [Eutrema salsugineum]
          Length = 696

 Score = 55.1 bits (131), Expect(2) = 1e-14
 Identities = 25/40 (62%), Positives = 34/40 (85%)
 Frame = -1

Query: 502 SSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           SSAAYVLLSN+YASAGRW++V  +R+ MK++ I+K+P  S
Sbjct: 528 SSAAYVLLSNIYASAGRWSNVSKLRVKMKQKGIMKKPGSS 567



 Score = 50.4 bits (119), Expect(2) = 1e-14
 Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD* 195
           S ++Y+KL+ L  KL      P     L      +K++   YHS RLA  FGLVN  +  
Sbjct: 586 SLRVYEKLEFLRDKLKELGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLVNTVEGS 645

Query: 194 IIRVMKNLQICGDCHSAIKL 135
            + VMKNL++C DCH+ IKL
Sbjct: 646 TVTVMKNLRVCEDCHAVIKL 665


>ref|XP_004504222.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cicer arietinum]
          Length = 708

 Score = 55.5 bits (132), Expect(2) = 1e-14
 Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
 Frame = -3

Query: 335 KIYQKLDTLGGKLTTPCMM---------LRLSRKKKCCLYHS*RLA--FGLVNMYKD*II 189
           KIY+KLD LG KL     +         + + ++++   YHS RLA  FGL++  +   I
Sbjct: 600 KIYEKLDWLGVKLKEMGYVPDQQFALHDVEIEQQEEMLSYHSERLAIAFGLLSTVEGSRI 659

Query: 188 RVMKNLQICGDCHSAIKLKLK 126
            VMKNL++CGDCH+ IKL  K
Sbjct: 660 TVMKNLRVCGDCHNVIKLLAK 680



 Score = 49.7 bits (117), Expect(2) = 1e-14
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ S AYVLLSN+YAS  RW++V  IR  MK   +VKQP  S
Sbjct: 536 PDCSPAYVLLSNLYASLRRWSEVAKIRSKMKHNGVVKQPGSS 577


>ref|XP_004233864.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Solanum lycopersicum]
          Length = 688

 Score = 54.7 bits (130), Expect(2) = 3e-14
 Identities = 26/42 (61%), Positives = 31/42 (73%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           PN SAAYVLLSN+YA +GRWNDV  +R +M+ R   KQP  S
Sbjct: 517 PNCSAAYVLLSNIYAFSGRWNDVARVRGNMRRRGNTKQPGCS 558



 Score = 49.3 bits (116), Expect(2) = 3e-14
 Identities = 36/83 (43%), Positives = 45/83 (54%), Gaps = 11/83 (13%)
 Frame = -3

Query: 341 STKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD* 195
           S +IY+KL+ L  KL      P     L      +K+    YHS RLA  F L+  +   
Sbjct: 579 SRRIYEKLEMLTEKLKEYGYVPDQRYALHDVEDEQKEVLLSYHSERLAICFALITTHGS- 637

Query: 194 IIRVMKNLQICGDCHSAIKLKLK 126
            I VMKNL++CGDCHSAIKL  K
Sbjct: 638 AITVMKNLRVCGDCHSAIKLIAK 660


>ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523936|gb|AET04390.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 53.5 bits (127), Expect(2) = 5e-14
 Identities = 27/42 (64%), Positives = 31/42 (73%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P+ SAAYVLLSN+YAS+ RW +V  IRM MK   IVKQP  S
Sbjct: 555 PDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSS 596



 Score = 49.7 bits (117), Expect(2) = 5e-14
 Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
 Frame = -3

Query: 335 KIYQKLDTLGGKLTTPCMM---------LRLSRKKKCCLYHS*RLA--FGLVNMYKD*II 189
           +IY+KL  LG KL     +         + + + ++   YHS RLA  FGL++  +   I
Sbjct: 619 EIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNEEMLSYHSERLAIAFGLLSTVEGSTI 678

Query: 188 RVMKNLQICGDCHSAIKLKLK 126
            +MKNL++CGDCH+AI L  K
Sbjct: 679 TIMKNLRVCGDCHTAITLMAK 699


>ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
           gi|10177583|dbj|BAB10814.1| unnamed protein product
           [Arabidopsis thaliana] gi|332008005|gb|AED95388.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 697

 Score = 53.9 bits (128), Expect(2) = 5e-14
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = -1

Query: 502 SSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           SSAAYVLLSN+YASAGRW++V  +R+ MK+  I+K+P  S
Sbjct: 529 SSAAYVLLSNIYASAGRWSNVSKLRVKMKKNGIMKKPGSS 568



 Score = 49.3 bits (116), Expect(2) = 5e-14
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 11/79 (13%)
 Frame = -3

Query: 338 TKIYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD*I 192
           ++IY+KL+ L  KL      P     L      +K++   YHS RLA  FGL+N  +   
Sbjct: 588 SRIYEKLEFLREKLKELGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSA 647

Query: 191 IRVMKNLQICGDCHSAIKL 135
           + VMKNL++C DCH+ IKL
Sbjct: 648 VTVMKNLRVCEDCHTVIKL 666


>ref|XP_006355631.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Solanum tuberosum]
          Length = 688

 Score = 55.5 bits (132), Expect(2) = 8e-14
 Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS----KGIK 371
           PN SAAYVLLSN+YA +GRWNDV  +R +M+ R   KQP  S    KGI+
Sbjct: 517 PNCSAAYVLLSNIYAFSGRWNDVARVRGNMRRRGNTKQPGCSWVNQKGIR 566



 Score = 47.0 bits (110), Expect(2) = 8e-14
 Identities = 35/80 (43%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
 Frame = -3

Query: 332 IYQKLDTLGGKLT----TPCMMLRL-----SRKKKCCLYHS*RLA--FGLVNMYKD*IIR 186
           IY+KL+ L  KL      P     L      +K+    YHS RLA  F L+  +    I 
Sbjct: 582 IYEKLEWLTEKLKEYGYVPDQRYALHDVEDEQKEVLLSYHSERLAICFALITTHGS-AIT 640

Query: 185 VMKNLQICGDCHSAIKLKLK 126
           VMKNL++CGDCHSAIKL  K
Sbjct: 641 VMKNLRVCGDCHSAIKLIAK 660


>ref|XP_006406136.1| hypothetical protein EUTSA_v10020066mg [Eutrema salsugineum]
           gi|557107282|gb|ESQ47589.1| hypothetical protein
           EUTSA_v10020066mg [Eutrema salsugineum]
          Length = 836

 Score = 56.6 bits (135), Expect(3) = 1e-13
 Identities = 26/42 (61%), Positives = 32/42 (76%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQPARS 383
           P  + +YVLLSNVYASAGRWNDV  +R+SMKE+ + K P  S
Sbjct: 668 PERTGSYVLLSNVYASAGRWNDVAKVRLSMKEKGLRKPPGTS 709



 Score = 42.4 bits (98), Expect(3) = 1e-13
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = -3

Query: 230 LAFGLVNMYKD*IIRVMKNLQICGDCHSAIKLKLK 126
           +AFGL++  K   IR++KNL++C DCHS  KL  K
Sbjct: 774 MAFGLISSKKGTTIRIVKNLRVCSDCHSFAKLASK 808



 Score = 22.7 bits (47), Expect(3) = 1e-13
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)
 Frame = -2

Query: 384 VKGSRHEFLHGDSMEHENLPKA*HIRWETN---------DTLHDVKAEQKEEMLS 247
           ++G  HEF  GD   H  +P+   +  E +         + L DV  ++K  MLS
Sbjct: 713 IRGKTHEFTSGDE-SHPEMPRIEAMLDEISHLGHVPDLGNVLMDVDDQEKRFMLS 766


>ref|XP_007038997.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
           gi|508776242|gb|EOY23498.1| Tetratricopeptide
           repeat-like superfamily protein [Theobroma cacao]
          Length = 860

 Score = 53.9 bits (128), Expect(2) = 2e-13
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = -1

Query: 508 PNSSAAYVLLSNVYASAGRWNDVWGIRMSMKERRIVKQ 395
           P+ +AAY+LLSN+YASAG+W DV  IR  MKER ++K+
Sbjct: 688 PHDAAAYILLSNLYASAGQWEDVAQIRKDMKERNLIKE 725



 Score = 47.4 bits (111), Expect(2) = 2e-13
 Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 11/77 (14%)
 Frame = -3

Query: 335 KIYQKLDTLGGKLT-------TPCMMLRLS--RKKKCCLYHS*RLA--FGLVNMYKD*II 189
           +IY+KLD +  K+        T  ++  L   +K++    HS ++A  FGL++  +   I
Sbjct: 752 EIYEKLDEMAFKIKGLGYVPDTDFVLHELEEEQKEQYVFQHSEKIAVAFGLISTSRSKPI 811

Query: 188 RVMKNLQICGDCHSAIK 138
           RV KNL++CGDCH+AIK
Sbjct: 812 RVFKNLRVCGDCHTAIK 828