BLASTX nr result
ID: Cocculus23_contig00039504
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00039504
(262 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006491362.1| PREDICTED: pentatricopeptide repeat-containi... 82 8e-14
ref|XP_006444734.1| hypothetical protein CICLE_v10019806mg [Citr... 82 8e-14
ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi... 80 2e-13
emb|CBI38708.3| unnamed protein product [Vitis vinifera] 80 2e-13
ref|XP_002515072.1| pentatricopeptide repeat-containing protein,... 76 6e-12
ref|XP_007219034.1| hypothetical protein PRUPE_ppa004557mg [Prun... 74 2e-11
ref|XP_003619886.1| Pentatricopeptide repeat-containing protein ... 72 1e-10
ref|XP_007041542.1| Tetratricopeptide repeat (TPR)-like superfam... 71 1e-10
ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containi... 71 2e-10
ref|XP_004306649.1| PREDICTED: pentatricopeptide repeat-containi... 70 2e-10
gb|AFK47097.1| unknown [Medicago truncatula] 70 2e-10
ref|XP_003614316.1| Pentatricopeptide repeat-containing protein ... 70 4e-10
ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containi... 67 2e-09
ref|XP_007152653.1| hypothetical protein PHAVU_004G147700g [Phas... 66 6e-09
ref|XP_006386647.1| hypothetical protein POPTR_0002s18000g [Popu... 65 1e-08
ref|XP_002301440.2| pentatricopeptide repeat-containing family p... 65 1e-08
ref|XP_004512775.1| PREDICTED: pentatricopeptide repeat-containi... 65 1e-08
gb|EYU37119.1| hypothetical protein MIMGU_mgv1a022987mg [Mimulus... 63 4e-08
ref|XP_006418005.1| hypothetical protein EUTSA_v10007424mg [Eutr... 62 6e-08
ref|NP_172051.1| pentatricopeptide repeat-containing protein [Ar... 61 1e-07
>ref|XP_006491362.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Citrus sinensis]
Length = 504
Score = 82.0 bits (201), Expect = 8e-14
Identities = 38/67 (56%), Positives = 47/67 (70%)
Frame = -1
Query: 259 VAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAF 80
V YN LI GLC +GK+YEAV+WLEEMISQ PD+SVW+ L++S+C NTA+ C
Sbjct: 438 VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497
Query: 79 HQLCSQS 59
QL S S
Sbjct: 498 EQLSSCS 504
>ref|XP_006444734.1| hypothetical protein CICLE_v10019806mg [Citrus clementina]
gi|557546996|gb|ESR57974.1| hypothetical protein
CICLE_v10019806mg [Citrus clementina]
Length = 504
Score = 82.0 bits (201), Expect = 8e-14
Identities = 38/67 (56%), Positives = 47/67 (70%)
Frame = -1
Query: 259 VAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAF 80
V YN LI GLC +GK+YEAV+WLEEMISQ PD+SVW+ L++S+C NTA+ C
Sbjct: 438 VETYNVLIRGLCSIGKQYEAVMWLEEMISQAKLPDISVWSSLVASVCCNTADLNVCRKTL 497
Query: 79 HQLCSQS 59
QL S S
Sbjct: 498 EQLSSCS 504
>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Vitis vinifera]
Length = 503
Score = 80.5 bits (197), Expect = 2e-13
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = -1
Query: 259 VAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAF 80
V YN LI GLC++G++Y+AV+WLEEM+ QG P VSVW+ L++S+CSN EAG C
Sbjct: 438 VETYNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVASVCSNMTEAGVCSETL 497
Query: 79 HQLCS 65
+L S
Sbjct: 498 EKLWS 502
>emb|CBI38708.3| unnamed protein product [Vitis vinifera]
Length = 466
Score = 80.5 bits (197), Expect = 2e-13
Identities = 35/65 (53%), Positives = 47/65 (72%)
Frame = -1
Query: 259 VAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAF 80
V YN LI GLC++G++Y+AV+WLEEM+ QG P VSVW+ L++S+CSN EAG C
Sbjct: 401 VETYNTLIRGLCLMGRQYDAVIWLEEMVVQGKLPAVSVWDSLVASVCSNMTEAGVCSETL 460
Query: 79 HQLCS 65
+L S
Sbjct: 461 EKLWS 465
>ref|XP_002515072.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545552|gb|EEF47056.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 504
Score = 75.9 bits (185), Expect = 6e-12
Identities = 34/67 (50%), Positives = 47/67 (70%)
Frame = -1
Query: 259 VAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAF 80
V +N LI GLC +G++YEA +WLEEMIS P++SVWN L++ +CSNTA+ AC F
Sbjct: 438 VDTFNMLIRGLCSIGRQYEATMWLEEMISLDEAPELSVWNSLVTCLCSNTADIDACCETF 497
Query: 79 HQLCSQS 59
+L + S
Sbjct: 498 KRLSNCS 504
>ref|XP_007219034.1| hypothetical protein PRUPE_ppa004557mg [Prunus persica]
gi|462415496|gb|EMJ20233.1| hypothetical protein
PRUPE_ppa004557mg [Prunus persica]
Length = 503
Score = 74.3 bits (181), Expect = 2e-11
Identities = 33/62 (53%), Positives = 46/62 (74%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAFHQL 71
YNR+I GLC +GK+YEAV+WLEEM S+ M P+ SVW+ L++S+C N A C +A+ +L
Sbjct: 441 YNRVITGLCSVGKQYEAVMWLEEMTSRAMLPEYSVWSSLVASVCCNMANIEVCSDAYKRL 500
Query: 70 CS 65
S
Sbjct: 501 KS 502
>ref|XP_003619886.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494901|gb|AES76104.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 576
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 11/73 (15%)
Frame = -1
Query: 262 SVAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCS----------- 116
S +YN LI GLC LG++YEAV+WLE+MISQG P++SVWN L SS C+
Sbjct: 419 SANSYNLLIEGLCSLGRQYEAVMWLEDMISQGKLPEISVWNSLASSFCNSGMMKVSAETF 478
Query: 115 NTAEAGACLNAFH 77
N C +FH
Sbjct: 479 NQMNISYCFTSFH 491
>ref|XP_007041542.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao] gi|508705477|gb|EOX97373.1| Tetratricopeptide
repeat (TPR)-like superfamily protein [Theobroma cacao]
Length = 500
Score = 71.2 bits (173), Expect = 1e-10
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGAC 92
YN L+ GLC +G++YEAV+WLEEM+SQGM P S+WN L++S+C ++ AC
Sbjct: 441 YNILVRGLCSVGRQYEAVMWLEEMVSQGMVPHFSLWNSLVASVCCKRSDIDAC 493
>ref|XP_004140638.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
gi|449526108|ref|XP_004170056.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g05600-like [Cucumis sativus]
Length = 497
Score = 70.9 bits (172), Expect = 2e-10
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGAC 92
+N LI GLC +GK YEAV+WLEEMISQG P V VWN L+SS+C + A C
Sbjct: 441 FNTLIKGLCSVGKHYEAVMWLEEMISQGQLPHVCVWNSLVSSLCCDVAGIDMC 493
>ref|XP_004306649.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Fragaria vesca subsp. vesca]
Length = 506
Score = 70.5 bits (171), Expect = 2e-10
Identities = 29/66 (43%), Positives = 47/66 (71%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAFHQL 71
Y+++I GLC +G++Y+AV+WLEEM SQ + P+ +VWN L++S+C N A AC +++L
Sbjct: 441 YSKVIRGLCSVGRQYDAVMWLEEMTSQAILPEYTVWNSLVASVCCNIANNEACSEVYNRL 500
Query: 70 CSQSGI 53
S +
Sbjct: 501 KSSPSV 506
>gb|AFK47097.1| unknown [Medicago truncatula]
Length = 378
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/50 (62%), Positives = 40/50 (80%)
Frame = -1
Query: 262 SVAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSN 113
S +YN LI GLC LG++YEAV+WLE+MISQG P++SVWN L SS C++
Sbjct: 313 SANSYNLLIEGLCSLGRQYEAVMWLEDMISQGKLPEISVWNSLASSSCNS 362
>ref|XP_003614316.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515651|gb|AES97274.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 504
Score = 69.7 bits (169), Expect = 4e-10
Identities = 30/46 (65%), Positives = 38/46 (82%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSN 113
YN LI GLC LG++YEAV+WLE+MISQG P++SVWN L SS C++
Sbjct: 443 YNLLIEGLCSLGRQYEAVMWLEDMISQGKLPEISVWNSLASSFCNS 488
>ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Glycine max]
Length = 502
Score = 67.4 bits (163), Expect = 2e-09
Identities = 28/47 (59%), Positives = 38/47 (80%)
Frame = -1
Query: 253 AYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSN 113
+YN LI GLC +G++YEAV+WLE+MISQG P++SVWN L S C++
Sbjct: 440 SYNSLIRGLCSIGRQYEAVMWLEDMISQGKLPEISVWNSLASLFCNS 486
>ref|XP_007152653.1| hypothetical protein PHAVU_004G147700g [Phaseolus vulgaris]
gi|561025962|gb|ESW24647.1| hypothetical protein
PHAVU_004G147700g [Phaseolus vulgaris]
Length = 502
Score = 65.9 bits (159), Expect = 6e-09
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = -1
Query: 253 AYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSN 113
+YN +I GLC LG++YEAV+WLE+MISQG P+ SVWN L S C++
Sbjct: 440 SYNSVIKGLCSLGRQYEAVMWLEDMISQGKLPETSVWNSLASLFCNS 486
>ref|XP_006386647.1| hypothetical protein POPTR_0002s18000g [Populus trichocarpa]
gi|550345261|gb|ERP64444.1| hypothetical protein
POPTR_0002s18000g [Populus trichocarpa]
Length = 467
Score = 64.7 bits (156), Expect = 1e-08
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAFHQL 71
YN LI GL +G++YEAV+WLEEM+SQ P++ VW L++S+C N F+QL
Sbjct: 405 YNILIRGLSSMGRQYEAVIWLEEMVSQDKLPELYVWRSLVTSVCCNMVAVDVSCETFNQL 464
Query: 70 CS 65
S
Sbjct: 465 IS 466
>ref|XP_002301440.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550345260|gb|EEE80713.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 503
Score = 64.7 bits (156), Expect = 1e-08
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSNTAEAGACLNAFHQL 71
YN LI GL +G++YEAV+WLEEM+SQ P++ VW L++S+C N F+QL
Sbjct: 441 YNILIRGLSSMGRQYEAVIWLEEMVSQDKLPELYVWRSLVTSVCCNMVAVDVSCETFNQL 500
Query: 70 CS 65
S
Sbjct: 501 IS 502
>ref|XP_004512775.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g05600-like [Cicer arietinum]
Length = 502
Score = 64.7 bits (156), Expect = 1e-08
Identities = 29/46 (63%), Positives = 37/46 (80%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMCSN 113
YN LI GLC LG++YEAV+ LE+MISQG P++SVWN L SS C++
Sbjct: 441 YNMLIEGLCSLGRQYEAVMLLEDMISQGKLPEISVWNSLSSSFCNS 486
>gb|EYU37119.1| hypothetical protein MIMGU_mgv1a022987mg [Mimulus guttatus]
Length = 461
Score = 63.2 bits (152), Expect = 4e-08
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = -1
Query: 250 YNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMC 119
Y R+I GLC++G ++AV+WLEEMISQG PD SVW L+SS+C
Sbjct: 408 YGRVIRGLCLIGNTFKAVLWLEEMISQGKIPDTSVWCSLVSSVC 451
>ref|XP_006418005.1| hypothetical protein EUTSA_v10007424mg [Eutrema salsugineum]
gi|557095776|gb|ESQ36358.1| hypothetical protein
EUTSA_v10007424mg [Eutrema salsugineum]
Length = 504
Score = 62.4 bits (150), Expect = 6e-08
Identities = 27/47 (57%), Positives = 35/47 (74%)
Frame = -1
Query: 259 VAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMC 119
V Y+ +I GLC + +RYEAV+WLEEM+SQ M P+ SVW L SS+C
Sbjct: 440 VDTYSVMIKGLCAMDRRYEAVMWLEEMVSQDMMPESSVWTALASSVC 486
>ref|NP_172051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334182311|ref|NP_001184914.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
gi|75213450|sp|Q9SYK1.1|PPR11_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At1g05600 gi|4836924|gb|AAD30626.1|AC007153_18
Hypothetical protein [Arabidopsis thaliana]
gi|53828567|gb|AAU94393.1| At1g05600 [Arabidopsis
thaliana] gi|56790224|gb|AAW30029.1| At1g05600
[Arabidopsis thaliana] gi|332189741|gb|AEE27862.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana] gi|332189742|gb|AEE27863.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 61.2 bits (147), Expect = 1e-07
Identities = 26/47 (55%), Positives = 34/47 (72%)
Frame = -1
Query: 259 VAAYNRLIGGLCVLGKRYEAVVWLEEMISQGMTPDVSVWNLLLSSMC 119
V Y+ +I GLC + +RYEAV+WLEEM+SQ M P+ SVW L S+C
Sbjct: 440 VETYHMMIKGLCDMDRRYEAVMWLEEMVSQDMVPESSVWKALAESVC 486