BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00038879
         (398 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thali...    92   2e-19
gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsi...    88   4e-19
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...    90   7e-19
gb|AAC62796.1| contains similarity to reverse transcriptase (Pfa...    87   9e-19
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]              92   2e-18
gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsi...    88   3e-18
ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623...    82   6e-18
ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626...    82   6e-18
gb|ABW81181.1| gag-pol20 [Arabidopsis cebennensis]                     90   6e-18
emb|CAN70842.1| hypothetical protein VITISV_013563 [Vitis vinifera]    84   1e-17
ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607...    80   2e-17
gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]                83   2e-17
emb|CAN83959.1| hypothetical protein VITISV_013448 [Vitis vinifera]    86   2e-17
gb|EXB37477.1| hypothetical protein L484_001142 [Morus notabilis]      77   2e-17
ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614...    80   3e-17
emb|CAN68501.1| hypothetical protein VITISV_026904 [Vitis vinifera]    85   4e-17
emb|CAN69893.1| hypothetical protein VITISV_005621 [Vitis vinifera]    87   4e-17
emb|CAN61713.1| hypothetical protein VITISV_034504 [Vitis vinifera]    86   5e-17
gb|AAD20432.1| putative retroelement pol polyprotein [Arabidopsi...    87   6e-17
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]              85   8e-17

>gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thaliana]
          Length = 1295

 Score = 91.7 bits (226), Expect(2) = 2e-19
 Identities = 44/83 (53%), Positives = 54/83 (65%)
 Frame = -2

Query: 355 SPSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTI 176
           S  + SH LN +PT  P+K K R LG +R+ A   +V +LL    IRE+ YP+ L N  +
Sbjct: 602 STEVISHELNVDPTFKPVKQKYRKLGPDRAEAVNAEVVRLLEEGLIREVKYPEWLANPVV 661

Query: 175 VKKPNCKWRTCVDFTDLNKVCPK 107
           VKK N KWR CVDFTDLNK CPK
Sbjct: 662 VKKKNGKWRVCVDFTDLNKACPK 684



 Score = 29.6 bits (65), Expect(2) = 2e-19
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ T GHE+L+  +A+ +YNQI M
Sbjct: 696 VESTTGHEMLSFMDAFSAYNQILM 719


>gb|AAD20101.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 764

 Score = 88.2 bits (217), Expect(2) = 4e-19
 Identities = 43/82 (52%), Positives = 52/82 (63%)
 Frame = -2

Query: 352 PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
           P ++ H LN +PT   +K K R LG ERS A   +V KLL    I E+ YP+ L N  +V
Sbjct: 482 PEVACHELNVDPTFKLVKQKRRKLGPERSKAVNDEVDKLLDAGSIVEVKYPEWLANPVVV 541

Query: 172 KKPNCKWRTCVDFTDLNKVCPK 107
           KK N KWR C+DFTDLNK CPK
Sbjct: 542 KKKNDKWRVCIDFTDLNKACPK 563



 Score = 32.0 bits (71), Expect(2) = 4e-19
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ T G+ELL+  +A+  YNQIPM
Sbjct: 575 VEATTGNELLSFMDAFSGYNQIPM 598


>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 89.7 bits (221), Expect(2) = 7e-19
 Identities = 45/94 (47%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
 Frame = -2

Query: 382  FCRSIATLPS--PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREI 209
            F  S+  +P    +++ H LN +PT  PLK K R LG +R+    ++V KLL    I E+
Sbjct: 755  FAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNEEVKKLLDAGSIVEV 814

Query: 208  HYPDCLPNVTIVKKPNCKWRTCVDFTDLNKVCPK 107
             YPD L N  +VKK N KWR C+DFTDLNK CPK
Sbjct: 815  RYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPK 848



 Score = 29.6 bits (65), Expect(2) = 7e-19
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ TAG+ELL+  +A+  YNQI M
Sbjct: 860 VEATAGNELLSFMDAFSGYNQILM 883


>gb|AAC62796.1| contains similarity to reverse transcriptase (Pfam: PF00078 rvt,
           E=4.3e-08) [Arabidopsis thaliana]
           gi|7267135|emb|CAB80803.1| AT4g03800 [Arabidopsis
           thaliana]
          Length = 637

 Score = 87.4 bits (215), Expect(2) = 9e-19
 Identities = 49/98 (50%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
 Frame = -2

Query: 394 GLLRFCRSIATLPS--PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNF 221
           G L   R+ A +P   PSI  H LN +P   PLK K R LG ER+ A   K+ KLL    
Sbjct: 310 GDLEGSRTSAYMPDIDPSIICHELNVDPRFKPLKQKRRKLGVERAKAVNGKIDKLLKIGS 369

Query: 220 IREIHYPDCLPNVTIVKKPNCKWRTCVDFTDLNKVCPK 107
           IRE+ YPD +    +VKK N K R C+DFTDLNK CPK
Sbjct: 370 IREVQYPDWVAITVVVKKKNGKDRVCIDFTDLNKACPK 407



 Score = 31.6 bits (70), Expect(2) = 9e-19
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ TAG+ELLT  +A+  YNQI M
Sbjct: 419 VESTAGNELLTFMDAFLGYNQIMM 442


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score = 92.0 bits (227), Expect(2) = 2e-18
 Identities = 44/82 (53%), Positives = 56/82 (68%)
 Frame = -2

Query: 352  PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
            P+I++H LN +PT  P+K K R LG ER+ A  ++V KLL    I E+ YP+ L N  +V
Sbjct: 809  PAITAHELNVDPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVV 868

Query: 172  KKPNCKWRTCVDFTDLNKVCPK 107
            KK N KWR CVD+TDLNK CPK
Sbjct: 869  KKKNGKWRVCVDYTDLNKACPK 890



 Score = 25.8 bits (55), Expect(2) = 2e-18
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ T+G+ LL+  +A+  YNQI M
Sbjct: 902 VEATSGNGLLSFMDAFSGYNQILM 925


>gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1329

 Score = 87.8 bits (216), Expect(2) = 3e-18
 Identities = 43/83 (51%), Positives = 53/83 (63%)
 Frame = -2

Query: 355 SPSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTI 176
           S  + SH LN +PT  P+K K R LG +R+ A   +V +LL    IRE+ YP+ L N  +
Sbjct: 416 STEVISHELNVDPTFKPVKQKRRKLGPDRAQAVNIEVVRLLEVGRIREVKYPEWLANPVV 475

Query: 175 VKKPNCKWRTCVDFTDLNKVCPK 107
           VKK N KWR CVDFTDLNK C K
Sbjct: 476 VKKKNGKWRVCVDFTDLNKACSK 498



 Score = 29.3 bits (64), Expect(2) = 3e-18
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ T GHE+L+  +A+  YNQI M
Sbjct: 510 VESTTGHEMLSFMDAFSGYNQILM 533


>ref|XP_006488688.1| PREDICTED: uncharacterized protein LOC102623105 [Citrus sinensis]
          Length = 1407

 Score = 82.0 bits (201), Expect(2) = 6e-18
 Identities = 39/82 (47%), Positives = 51/82 (62%)
 Frame = -2

Query: 352  PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
            P ++ H+L        ++ K R   +ER  A   +V KLL   FIRE++YP+ + NV +V
Sbjct: 857  PEVACHKLAMKKGARAVRQKRRCFNQERYEAVNDEVEKLLRAGFIREVNYPEWISNVVLV 916

Query: 172  KKPNCKWRTCVDFTDLNKVCPK 107
            KK N KWR CVDFTDLNK CPK
Sbjct: 917  KKANGKWRMCVDFTDLNKACPK 938



 Score = 34.3 bits (77), Expect(2) = 6e-18
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -1

Query: 74   VDVTAGHELLTLTNAYFSYNQIPM 3
            VD TAGH LL+  +A+  YNQIPM
Sbjct: 950  VDSTAGHGLLSFMDAFSGYNQIPM 973


>ref|XP_006464891.1| PREDICTED: uncharacterized protein LOC102626228 [Citrus sinensis]
          Length = 1189

 Score = 82.0 bits (201), Expect(2) = 6e-18
 Identities = 40/82 (48%), Positives = 50/82 (60%)
 Frame = -2

Query: 352  PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
            P ++ HRL        ++ K R   +ER  A   +V KLL   FIRE+ YP+ + NV +V
Sbjct: 779  PEVACHRLAIKKGARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVSYPEWISNVVLV 838

Query: 172  KKPNCKWRTCVDFTDLNKVCPK 107
            KK N KWR CVDFTDLNK CPK
Sbjct: 839  KKANGKWRMCVDFTDLNKACPK 860



 Score = 34.3 bits (77), Expect(2) = 6e-18
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           VD TAGH LL+  +A+  YNQIPM
Sbjct: 872 VDSTAGHGLLSFMDAFSGYNQIPM 895


>gb|ABW81181.1| gag-pol20 [Arabidopsis cebennensis]
          Length = 498

 Score = 89.7 bits (221), Expect(2) = 6e-18
 Identities = 43/77 (55%), Positives = 51/77 (66%)
 Frame = -2

Query: 337 HRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIVKKPNC 158
           H LN NP+  P+K K+R LG +R+ A + +V KLL    I E  YPD L N  +VKK N 
Sbjct: 196 HELNVNPSFKPIKQKKRKLGRDRADAVSAEVEKLLKIRSIAEARYPDWLANSVVVKKKNG 255

Query: 157 KWRTCVDFTDLNKVCPK 107
           KWR CVDFTDLNK CPK
Sbjct: 256 KWRVCVDFTDLNKACPK 272



 Score = 26.6 bits (57), Expect(2) = 6e-18
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ TAG++LL+   A+  YNQI M
Sbjct: 284 VEATAGNKLLSFMVAFAGYNQILM 307


>emb|CAN70842.1| hypothetical protein VITISV_013563 [Vitis vinifera]
          Length = 515

 Score = 83.6 bits (205), Expect(2) = 1e-17
 Identities = 39/82 (47%), Positives = 51/82 (62%)
 Frame = -2

Query: 352 PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
           PS++SH+LN  PT  P++ K R    +R      ++ KLL   FIRE+ YPD L NV +V
Sbjct: 6   PSVTSHKLNILPTARPIRQKVRRFHPDRQKIIRIEIDKLLEAGFIREVDYPDWLANVVVV 65

Query: 172 KKPNCKWRTCVDFTDLNKVCPK 107
            K   KWR CVD+T+LN  CPK
Sbjct: 66  PKKEGKWRVCVDYTNLNNACPK 87



 Score = 31.6 bits (70), Expect(2) = 1e-17
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           VD TAG  +L+  +A+F Y+QIPM
Sbjct: 99  VDSTAGQGMLSFLDAFFGYHQIPM 122


>ref|XP_006486503.1| PREDICTED: uncharacterized protein LOC102607673 [Citrus sinensis]
          Length = 1866

 Score = 79.7 bits (195), Expect(2) = 2e-17
 Identities = 40/80 (50%), Positives = 48/80 (60%)
 Frame = -2

Query: 346  ISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIVKK 167
            I+ H+L       P++ K R    ER  A   +V KLL   FIRE  YP+ + NV +VKK
Sbjct: 846  IACHKLAVKRGARPVRQKRRCFNHERYEAINAEVEKLLKAGFIREAKYPEWISNVVLVKK 905

Query: 166  PNCKWRTCVDFTDLNKVCPK 107
             N KWR CVDFTDLNK CPK
Sbjct: 906  ANGKWRMCVDFTDLNKACPK 925



 Score = 35.0 bits (79), Expect(2) = 2e-17
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -1

Query: 74   VDVTAGHELLTLTNAYFSYNQIPM 3
            VD TAGH LL+  +A+  YNQIPM
Sbjct: 937  VDSTAGHSLLSFMDAFSGYNQIPM 960


>gb|AAR13317.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1859

 Score = 83.2 bits (204), Expect(2) = 2e-17
 Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
 Frame = -2

Query: 382  FCRSIATLPS--PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREI 209
            F  + A +P     + +HRL+      P+  K+R LGEER  A+ ++  KL+   FI++ 
Sbjct: 874  FAWTAADMPGVKSDVITHRLSVYTEARPIAQKKRKLGEERRKAAREETDKLIQAGFIQKA 933

Query: 208  HYPDCLPNVTIVKKPNCKWRTCVDFTDLNKVCPK 107
            HY   L NV +VKK N KWR CVD+TDLNK CPK
Sbjct: 934  HYTTWLANVVMVKKTNGKWRMCVDYTDLNKACPK 967



 Score = 31.2 bits (69), Expect(2) = 2e-17
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 74   VDVTAGHELLTLTNAYFSYNQIPM 3
            VD  AGH++L+  +AY  YNQI M
Sbjct: 979  VDGAAGHQILSFLDAYSGYNQIQM 1002


>emb|CAN83959.1| hypothetical protein VITISV_013448 [Vitis vinifera]
          Length = 878

 Score = 86.3 bits (212), Expect(2) = 2e-17
 Identities = 41/82 (50%), Positives = 51/82 (62%)
 Frame = -2

Query: 352 PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
           PSI+SHRLN  PT  P++ K R    +R      ++ KLL   FIRE+ YPD L NV +V
Sbjct: 6   PSITSHRLNVFPTARPVRQKIRRFHPDRQKVIRNEIDKLLEAGFIREVDYPDWLANVVVV 65

Query: 172 KKPNCKWRTCVDFTDLNKVCPK 107
            K   KWR CVD+T+LN  CPK
Sbjct: 66  PKKEGKWRVCVDYTNLNNACPK 87



 Score = 28.1 bits (61), Expect(2) = 2e-17
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           +D T G E+L+  +A+  Y+QIPM
Sbjct: 99  LDSTIGQEMLSFLDAFSGYHQIPM 122


>gb|EXB37477.1| hypothetical protein L484_001142 [Morus notabilis]
          Length = 351

 Score = 77.4 bits (189), Expect(2) = 2e-17
 Identities = 37/80 (46%), Positives = 49/80 (61%)
 Frame = -2

Query: 346 ISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIVKK 167
           +  H LN +P  +P + K   +  ER  A  ++V KL+   FIRE HYP  + N+ +V K
Sbjct: 108 VMCHTLNADPLHSPKRQKHWPMNPERYEALKEEVDKLISNGFIREAHYPSWVSNLILVIK 167

Query: 166 PNCKWRTCVDFTDLNKVCPK 107
           PN  WRTCVDF+DLNK C K
Sbjct: 168 PNGTWRTCVDFSDLNKACSK 187



 Score = 37.0 bits (84), Expect(2) = 2e-17
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           VD TAGHE+L+  NAY  YNQI M
Sbjct: 199 VDATAGHEMLSFMNAYSGYNQIHM 222


>ref|XP_006478539.1| PREDICTED: uncharacterized protein LOC102614166 [Citrus sinensis]
          Length = 1089

 Score = 79.7 bits (195), Expect(2) = 3e-17
 Identities = 40/80 (50%), Positives = 48/80 (60%)
 Frame = -2

Query: 346 ISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIVKK 167
           I+ H+L       P++ K R    ER  A   +V KLL   FIRE  YP+ + NV +VKK
Sbjct: 679 IACHKLAVKRGARPVRQKRRCFNHERYEAINAEVEKLLKAGFIREAKYPEWISNVVLVKK 738

Query: 166 PNCKWRTCVDFTDLNKVCPK 107
            N KWR CVDFTDLNK CPK
Sbjct: 739 ANGKWRMCVDFTDLNKACPK 758



 Score = 34.3 bits (77), Expect(2) = 3e-17
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           VD TAGH LL+  +A+  YNQIPM
Sbjct: 770 VDSTAGHGLLSFMDAFSGYNQIPM 793


>emb|CAN68501.1| hypothetical protein VITISV_026904 [Vitis vinifera]
          Length = 817

 Score = 85.1 bits (209), Expect(2) = 4e-17
 Identities = 39/82 (47%), Positives = 51/82 (62%)
 Frame = -2

Query: 352 PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
           PSI+SHRLN  PT  P++ + R    +R      ++ KLL   FIRE+ YPD L NV +V
Sbjct: 6   PSIASHRLNVLPTARPVRQRVRRFHPDRQKIIRDEIDKLLEVRFIREVEYPDWLANVVVV 65

Query: 172 KKPNCKWRTCVDFTDLNKVCPK 107
            K   KW  C+D+T+LNK CPK
Sbjct: 66  PKKESKWXVCIDYTNLNKACPK 87



 Score = 28.5 bits (62), Expect(2) = 4e-17
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           VD TAG  +L+  +A+  Y+QIPM
Sbjct: 99  VDSTAGQGMLSFLDAFSEYHQIPM 122


>emb|CAN69893.1| hypothetical protein VITISV_005621 [Vitis vinifera]
          Length = 787

 Score = 86.7 bits (213), Expect(2) = 4e-17
 Identities = 41/82 (50%), Positives = 51/82 (62%)
 Frame = -2

Query: 352 PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
           PSI+SHRLN  PT  P++ K R    +R      ++ KLL   FIRE+ YPD L NV +V
Sbjct: 6   PSITSHRLNVLPTARPIRQKVRRFHPDRQKIIRNEIDKLLEAGFIREVDYPDWLANVVVV 65

Query: 172 KKPNCKWRTCVDFTDLNKVCPK 107
            K   KWR CVD+T+LN  CPK
Sbjct: 66  PKKEGKWRVCVDYTNLNNACPK 87



 Score = 26.9 bits (58), Expect(2) = 4e-17
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           VD T G  +L+  +A+  Y+QIPM
Sbjct: 99  VDSTTGQGMLSFLDAFSGYHQIPM 122


>emb|CAN61713.1| hypothetical protein VITISV_034504 [Vitis vinifera]
          Length = 1027

 Score = 86.3 bits (212), Expect(2) = 5e-17
 Identities = 41/82 (50%), Positives = 51/82 (62%)
 Frame = -2

Query: 352 PSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTIV 173
           PSI+SHRLN  PT  P++ K R    +R      ++ KLL   FIRE+ YPD L NV +V
Sbjct: 6   PSITSHRLNVFPTTRPVRQKIRRFHPDRQKVIRNEIDKLLEAGFIREVDYPDWLANVVVV 65

Query: 172 KKPNCKWRTCVDFTDLNKVCPK 107
            K   KWR CVD+T+LN  CPK
Sbjct: 66  PKKEGKWRVCVDYTNLNNACPK 87



 Score = 26.9 bits (58), Expect(2) = 5e-17
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           VD T G  +L+  +A+  Y+QIPM
Sbjct: 99  VDSTTGQGMLSFLDAFSGYHQIPM 122


>gb|AAD20432.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 152

 Score = 87.0 bits (214), Expect(2) = 6e-17
 Identities = 43/83 (51%), Positives = 52/83 (62%)
 Frame = -2

Query: 355 SPSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTI 176
           S  I +H LN +PT  P+K K R LG ER+ A   +V KLL    I +  YP+ L N  +
Sbjct: 17  SVEIVAHELNVDPTFKPVKQKRRKLGRERAEAVKAEVEKLLRIGSITKAKYPEWLANPVV 76

Query: 175 VKKPNCKWRTCVDFTDLNKVCPK 107
           VKK N KWR C+DFTDLNK CPK
Sbjct: 77  VKKKNGKWRVCIDFTDLNKACPK 99



 Score = 25.8 bits (55), Expect(2) = 6e-17
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ T+G +LL+  +A+  YNQI M
Sbjct: 111 VESTSGDKLLSFMDAFAGYNQIMM 134


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score = 85.1 bits (209), Expect(2) = 8e-17
 Identities = 42/83 (50%), Positives = 53/83 (63%)
 Frame = -2

Query: 355 SPSISSHRLNTNPTVTPLK*KERSLGEERSIASAKKVFKLLITNFIREIHYPDCLPNVTI 176
           +PSI  H LN +P+  P+K K R LG ER+     +V KLL    IRE+ YP+ + N  +
Sbjct: 5   NPSIICHELNVDPSFKPVKQKRRKLGVERAKIVNDEVDKLLKIGSIREVQYPEWVANTVV 64

Query: 175 VKKPNCKWRTCVDFTDLNKVCPK 107
           VKK N K R C+DFTDLNK CPK
Sbjct: 65  VKKKNGKDRVCIDFTDLNKACPK 87



 Score = 27.3 bits (59), Expect(2) = 8e-17
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 74  VDVTAGHELLTLTNAYFSYNQIPM 3
           V+ TAG+ELLT  +A+   NQI M
Sbjct: 99  VESTAGNELLTFMDAFSGSNQIMM 122