BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00038856
         (226 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMS54598.1| Transposon Ty3-G Gag-Pol polyprotein [Triticum ur...   120   3e-25
ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203...   119   3e-25
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]   119   3e-25
emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]   119   3e-25
emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera]   119   6e-25
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   118   8e-25
ref|XP_004980450.1| PREDICTED: uncharacterized protein LOC101760...   117   2e-24
ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775...   117   2e-24
ref|XP_004980451.1| PREDICTED: uncharacterized protein LOC101761...   117   2e-24
ref|XP_004980445.1| PREDICTED: uncharacterized protein LOC101756...   117   2e-24
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   117   2e-24
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       116   4e-24
gb|ABC50100.1| gag-pol polyprotein [Bambusa multiplex]                116   4e-24
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   116   4e-24
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   116   4e-24
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   116   4e-24
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  116   4e-24
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  116   4e-24
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   115   5e-24
gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Ja...   115   5e-24

>gb|EMS54598.1| Transposon Ty3-G Gag-Pol polyprotein [Triticum urartu]
          Length = 1704

 Score =  120 bits (300), Expect = 3e-25
 Identities = 51/74 (68%), Positives = 60/74 (81%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           +R+  +FV RC +CQ  KG+  N GLY PLP+P  PW DI MDFVLGLPRT+RGSD++FV
Sbjct: 694 KRDAGKFVQRCPVCQTCKGQVQNTGLYMPLPVPVAPWEDIPMDFVLGLPRTRRGSDAVFV 753

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 754 VVDRFSKMAHFIPC 767


>ref|XP_004140807.1| PREDICTED: uncharacterized protein LOC101203557 [Cucumis sativus]
          Length = 1406

 Score =  119 bits (299), Expect = 3e-25
 Identities = 53/73 (72%), Positives = 60/73 (82%)
 Frame = -3

Query: 221  REVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFVV 42
            R+V  F+ RC ICQ +KG + N GLY PLPIP+  W D+SMDFVLGLPRTQRG DS+FVV
Sbjct: 1153 RDVTNFIKRCSICQTAKGNSQNTGLYTPLPIPSTIWEDLSMDFVLGLPRTQRGHDSVFVV 1212

Query: 41   VDRFSKMAHFIPC 3
            VDRFSKMAHFIPC
Sbjct: 1213 VDRFSKMAHFIPC 1225


>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score =  119 bits (299), Expect = 3e-25
 Identities = 52/74 (70%), Positives = 62/74 (83%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            +++V + + +CR CQV KG   N GLY PLP+P++PW D+SMDFVLGLPRTQRG DSIFV
Sbjct: 1134 KKDVWKVIKQCRACQVGKGSKQNTGLYTPLPVPSKPWEDLSMDFVLGLPRTQRGFDSIFV 1193

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1194 VVDRFSKMAHFIPC 1207


>emb|CAN64427.1| hypothetical protein VITISV_029384 [Vitis vinifera]
          Length = 1392

 Score =  119 bits (299), Expect = 3e-25
 Identities = 52/74 (70%), Positives = 62/74 (83%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            +++V + + +CR CQV KG   N GLY PLP+P++PW D+SMDFVLGLPRTQRG DSIFV
Sbjct: 1005 KKDVWKVIKQCRACQVGKGSKQNTGLYTPLPVPSKPWEDLSMDFVLGLPRTQRGFDSIFV 1064

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1065 VVDRFSKMAHFIPC 1078


>emb|CAN69233.1| hypothetical protein VITISV_003380 [Vitis vinifera]
          Length = 1292

 Score =  119 bits (297), Expect = 6e-25
 Identities = 52/74 (70%), Positives = 61/74 (82%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            +++V + +  CR CQV KG   N GLY PLP+P++PW D+SMDFVLGLPRTQRG DSIFV
Sbjct: 965  KKDVWKVIKXCRACQVGKGSKQNTGLYTPLPVPSKPWEDLSMDFVLGLPRTQRGFDSIFV 1024

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1025 VVDRFSKMAHFIPC 1038


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  118 bits (296), Expect = 8e-25
 Identities = 55/74 (74%), Positives = 60/74 (81%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+PT PW DISMDFVLGLPRT+RG DSIFV
Sbjct: 1228 RRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFV 1287

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1288 VVDRFSKMAHFIPC 1301



 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 39/74 (52%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATN-AGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIF 48
            +RE+A FV  C +CQ  K +    AGL +PL +P   W +I MDF+ GLP+TQ G DSI+
Sbjct: 2049 KREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIW 2108

Query: 47   VVVDRFSKMAHFIP 6
            VVVDR +K+A FIP
Sbjct: 2109 VVVDRLTKVARFIP 2122


>ref|XP_004980450.1| PREDICTED: uncharacterized protein LOC101760928 [Setaria italica]
          Length = 1090

 Score =  117 bits (293), Expect = 2e-24
 Identities = 54/74 (72%), Positives = 60/74 (81%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT+RG DSIFV
Sbjct: 638 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSIPWADISMDFVLGLPRTKRGRDSIFV 697

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 698 VVDRFSKMAHFIPC 711


>ref|XP_004959519.1| PREDICTED: uncharacterized protein LOC101775623 [Setaria italica]
          Length = 911

 Score =  117 bits (293), Expect = 2e-24
 Identities = 54/74 (72%), Positives = 60/74 (81%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT+RG DSIFV
Sbjct: 514 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSIPWADISMDFVLGLPRTKRGRDSIFV 573

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 574 VVDRFSKMAHFIPC 587


>ref|XP_004980451.1| PREDICTED: uncharacterized protein LOC101761720, partial [Setaria
           italica]
          Length = 738

 Score =  117 bits (292), Expect = 2e-24
 Identities = 53/74 (71%), Positives = 59/74 (79%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           R +V R V RC  CQ +K +  N GLY PLP+PT PW DISMDFVLGLPRT++G DSIFV
Sbjct: 491 RADVERLVARCTTCQKAKSRLNNHGLYMPLPVPTSPWLDISMDFVLGLPRTKKGRDSIFV 550

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 551 VVDRFSKMAHFIPC 564


>ref|XP_004980445.1| PREDICTED: uncharacterized protein LOC101756049, partial [Setaria
           italica]
          Length = 763

 Score =  117 bits (292), Expect = 2e-24
 Identities = 53/74 (71%), Positives = 59/74 (79%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           R +V R V RC  CQ +K +  N GLY PLP+PT PW DISMDFVLGLPRT++G DSIFV
Sbjct: 516 RADVERLVARCTTCQKAKSRLNNHGLYMPLPVPTSPWLDISMDFVLGLPRTKKGRDSIFV 575

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 576 VVDRFSKMAHFIPC 589


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  117 bits (292), Expect = 2e-24
 Identities = 54/74 (72%), Positives = 59/74 (79%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+PT PW DISMDFVLGLPRT+RG DSIFV
Sbjct: 1207 RRDVGRFVARCATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFV 1266

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKM HFIPC
Sbjct: 1267 VVDRFSKMVHFIPC 1280


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1316 VVDRFSKMAHFIPC 1329


>gb|ABC50100.1| gag-pol polyprotein [Bambusa multiplex]
          Length = 227

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 44  RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 103

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 104 VVDRFSKMAHFIPC 117


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 889

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 569 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 628

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 629 VVDRFSKMAHFIPC 642


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 1152 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1211

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1212 VVDRFSKMAHFIPC 1225


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 1256 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1315

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1316 VVDRFSKMAHFIPC 1329


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 1287 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1346

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1347 VVDRFSKMAHFIPC 1360


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  116 bits (290), Expect = 4e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 1284 RRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1343

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1344 VVDRFSKMAHFIPC 1357


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  115 bits (289), Expect = 5e-24
 Identities = 53/74 (71%), Positives = 60/74 (81%)
 Frame = -3

Query: 224  RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
            RR+V RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT++G DSIFV
Sbjct: 1272 RRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFV 1331

Query: 44   VVDRFSKMAHFIPC 3
            VVDRFSKMAHFIPC
Sbjct: 1332 VVDRFSKMAHFIPC 1345


>gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Japonica Group]
          Length = 540

 Score =  115 bits (289), Expect = 5e-24
 Identities = 52/74 (70%), Positives = 60/74 (81%)
 Frame = -3

Query: 224 RREVARFVDRCRICQVSKGKATNAGLYRPLPIPTQPWTDISMDFVLGLPRTQRGSDSIFV 45
           R+++ RFV RC  CQ +K +    GLY PLP+P+ PW DISMDFVLGLPRT+RG DSIFV
Sbjct: 151 RKDIERFVARCTTCQKAKSRLNPHGLYMPLPVPSIPWADISMDFVLGLPRTKRGRDSIFV 210

Query: 44  VVDRFSKMAHFIPC 3
           VVDRFSKMAHFIPC
Sbjct: 211 VVDRFSKMAHFIPC 224