BLASTX nr result
ID: Cocculus23_contig00038812
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00038812
(310 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFK88551.1| reverse transcriptase, partial [Arabidopsis halle... 128 7e-28
gb|AFK88552.1| reverse transcriptase, partial [Arabidopsis halle... 127 1e-27
gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halle... 125 6e-27
gb|AFK88550.1| reverse transcriptase, partial [Arabidopsis halle... 124 1e-26
gb|AGH20666.1| reverse transcriptase, partial [Arabis hirsuta] 124 2e-26
gb|AGH20673.1| reverse transcriptase, partial [Crucihimalaya wal... 123 2e-26
gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halle... 123 2e-26
gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halle... 123 2e-26
gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halle... 123 2e-26
gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halle... 123 2e-26
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 123 2e-26
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 123 3e-26
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana] 123 3e-26
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 123 3e-26
gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis c... 122 7e-26
gb|AGH20667.1| reverse transcriptase, partial [Arabis hirsuta] 122 7e-26
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 122 7e-26
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 122 7e-26
gb|AGH20681.1| reverse transcriptase, partial [Raphanus sativus] 121 9e-26
gb|AGH20682.1| reverse transcriptase, partial [Raphanus sativus] 121 1e-25
>gb|AFK88551.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 128 bits (322), Expect = 7e-28
Identities = 68/102 (66%), Positives = 79/102 (77%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VACLET RL
Sbjct: 32 SLPNGHNAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVACLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AFK88552.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 127 bits (320), Expect = 1e-27
Identities = 68/102 (66%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN K +VERYKARLVAKG S++A I+YDEVFA VACLET RL
Sbjct: 32 SLPNGHNAIGVKWVYKAKKNPKGEVERYKARLVAKGYSQRAGIDYDEVFAPVACLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AFK88549.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 125 bits (314), Expect = 6e-27
Identities = 68/102 (66%), Positives = 79/102 (77%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KST + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSTFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AFK88550.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 124 bits (312), Expect = 1e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLV KG S++A I+YDEVFALVA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVVKGYSQRAGIDYDEVFALVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AGH20666.1| reverse transcriptase, partial [Arabis hirsuta]
Length = 315
Score = 124 bits (310), Expect = 2e-26
Identities = 65/102 (63%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G I VKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VACLET RL
Sbjct: 32 SLPNGHKVISVKWVYKVKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVACLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ +I Q+D+KST + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNNWRIHQIDVKSTFLNGDLEEEVYIEQTQGYIVKG 133
>gb|AGH20673.1| reverse transcriptase, partial [Crucihimalaya wallichii]
Length = 315
Score = 123 bits (309), Expect = 2e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
+LP G IGVKWV K KKN+K +VERYKARLVAKG S+KA I+YDEVFA VA LET RL
Sbjct: 32 TLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQKAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AFK88553.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 123 bits (309), Expect = 2e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AFK88544.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 123 bits (309), Expect = 2e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AFK88543.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 123 bits (309), Expect = 2e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AFK88542.1| reverse transcriptase, partial [Arabidopsis halleri subsp.
gemmifera] gi|389595484|gb|AFK88545.1| reverse
transcriptase, partial [Arabidopsis halleri subsp.
gemmifera]
Length = 315
Score = 123 bits (309), Expect = 2e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 123 bits (309), Expect = 2e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 839 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 898
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 899 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 940
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 123 bits (308), Expect = 3e-26
Identities = 67/102 (65%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G TIGVKWV K KKN+K +VERYKARLVAKG ++A I+YDEVFA VA LET RL
Sbjct: 871 SLPNGHKTIGVKWVYKAKKNSKGEVERYKARLVAKGYIQRAGIDYDEVFAPVARLETVRL 930
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 931 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 972
>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 623
Score = 123 bits (308), Expect = 3e-26
Identities = 66/102 (64%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDE+FA VA LET RL
Sbjct: 368 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRL 427
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 428 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 469
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1272
Score = 123 bits (308), Expect = 3e-26
Identities = 66/102 (64%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDE+FA VA LET RL
Sbjct: 871 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEIFAPVARLETVRL 930
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 931 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 972
>gb|AGH20677.1| reverse transcriptase, partial [Olimarabidopsis cabulica]
Length = 286
Score = 122 bits (305), Expect = 7e-26
Identities = 65/102 (63%), Positives = 79/102 (77%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G+ IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGQKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ + KI QMD+KS + G L++EVYI Q G +KG
Sbjct: 92 IISLAAQNEWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIIKG 133
>gb|AGH20667.1| reverse transcriptase, partial [Arabis hirsuta]
Length = 315
Score = 122 bits (305), Expect = 7e-26
Identities = 66/102 (64%), Positives = 78/102 (76%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRARIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ +I QMD+KST + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQNNWRIHQMDVKSTFLNGDLEEEVYIEQPQGYIVKG 133
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 122 bits (305), Expect = 7e-26
Identities = 66/102 (64%), Positives = 77/102 (75%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++ I+YDEVFA VA LET RL
Sbjct: 871 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRL 930
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 931 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 972
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 122 bits (305), Expect = 7e-26
Identities = 66/102 (64%), Positives = 77/102 (75%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++ I+YDEVFA VA LET RL
Sbjct: 871 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRVGIDYDEVFAPVARLETVRL 930
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ K KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 931 IISLAAQNKWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 972
>gb|AGH20681.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 121 bits (304), Expect = 9e-26
Identities = 66/102 (64%), Positives = 77/102 (75%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGYSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQKSWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133
>gb|AGH20682.1| reverse transcriptase, partial [Raphanus sativus]
Length = 315
Score = 121 bits (303), Expect = 1e-25
Identities = 66/102 (64%), Positives = 77/102 (75%)
Frame = -3
Query: 308 SLPKGRTTIGVKWVDKTKKNAKVQVERYKARLVAKGCSRKADINYDEVFALVACLETARL 129
SLP G IGVKWV K KKN+K +VERYKARLVAKG S++A I+YDEVFA VA LET RL
Sbjct: 32 SLPNGHKAIGVKWVYKAKKNSKGEVERYKARLVAKGNSQRAGIDYDEVFAPVARLETVRL 91
Query: 128 IVSLAAECKLKIFQMDMKSTLVYGILDKEVYIRQLLGNEVKG 3
I+SLAA+ KI QMD+KS + G L++EVYI Q G VKG
Sbjct: 92 IISLAAQKSWKIHQMDVKSAFLNGDLEEEVYIEQPQGYIVKG 133