BLASTX nr result
ID: Cocculus23_contig00038732
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00038732
(286 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 75 7e-12
ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutr... 75 9e-12
ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform ... 74 2e-11
ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform ... 74 2e-11
emb|CBI29879.3| unnamed protein product [Vitis vinifera] 74 2e-11
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps... 74 2e-11
gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus... 72 8e-11
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr... 72 1e-10
ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I sub... 72 1e-10
ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I sub... 72 1e-10
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub... 71 2e-10
ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I sub... 70 3e-10
ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I sub... 70 3e-10
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub... 70 4e-10
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub... 69 9e-10
emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera] 68 1e-09
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub... 66 6e-09
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab... 65 1e-08
ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I sub... 64 3e-08
ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phas... 63 5e-08
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus
communis]
Length = 1686
Score = 75.5 bits (184), Expect = 7e-12
Identities = 34/58 (58%), Positives = 44/58 (75%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
++ ++GATE ++++ F LT EEVRK S V+ITNP L D +E P PGGLYDPALGPL
Sbjct: 4 ISSVSKGATESIDSISFSFLTDEEVRKHSFVKITNPRLLDLVERPVPGGLYDPALGPL 61
>ref|XP_006402858.1| hypothetical protein EUTSA_v10005738mg [Eutrema salsugineum]
gi|557103957|gb|ESQ44311.1| hypothetical protein
EUTSA_v10005738mg [Eutrema salsugineum]
Length = 1697
Score = 75.1 bits (183), Expect = 9e-12
Identities = 32/57 (56%), Positives = 44/57 (77%)
Frame = -3
Query: 173 AHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
A T EGA++ VE+V+F +T E+VRK S++++TNP L D +E P PGGLYDP +GPL
Sbjct: 4 AQTIEGASQVVESVRFSFMTEEDVRKHSVMKVTNPVLLDNVERPVPGGLYDPLMGPL 60
>ref|XP_007028854.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
gi|508717459|gb|EOY09356.1| Nuclear RNA polymerase A1,
putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 74.3 bits (181), Expect = 2e-11
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
MA TEGAT+ VEAV+F +T EEVRK S +++TN L D ++ P PGGLYD LGPL
Sbjct: 1 MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPL 58
>ref|XP_007028853.1| Nuclear RNA polymerase A1, putative isoform 1 [Theobroma cacao]
gi|508717458|gb|EOY09355.1| Nuclear RNA polymerase A1,
putative isoform 1 [Theobroma cacao]
Length = 1665
Score = 74.3 bits (181), Expect = 2e-11
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
MA TEGAT+ VEAV+F +T EEVRK S +++TN L D ++ P PGGLYD LGPL
Sbjct: 1 MAQITEGATDSVEAVRFNFMTTEEVRKHSFLKVTNANLLDLMDRPMPGGLYDAVLGPL 58
>emb|CBI29879.3| unnamed protein product [Vitis vinifera]
Length = 1669
Score = 74.3 bits (181), Expect = 2e-11
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
MAH EG TE VEAVKF T EEVRK S +IT+P + D ++ P PGGLYDPALG +
Sbjct: 1 MAHVIEGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSI 58
>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
gi|482559195|gb|EOA23386.1| hypothetical protein
CARUB_v10016563mg [Capsella rubella]
Length = 1651
Score = 73.9 bits (180), Expect = 2e-11
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = -3
Query: 173 AHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
A TTEGA++ VE+V+F +T ++VRK S +++T+P L D +E P PGGLYDP +GPL
Sbjct: 4 AQTTEGASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVERPVPGGLYDPVMGPL 60
>gb|EYU39881.1| hypothetical protein MIMGU_mgv1a000122mg [Mimulus guttatus]
Length = 1719
Score = 72.0 bits (175), Expect = 8e-11
Identities = 36/55 (65%), Positives = 40/55 (72%)
Frame = -3
Query: 167 TTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
+TE TE VEAV+FG T EE RK SLV+ITNP L D L P PGGLYDPA+G L
Sbjct: 3 STECTTEVVEAVRFGFFTDEEARKHSLVKITNPNLVDILGKPCPGGLYDPAMGSL 57
>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
gi|557523327|gb|ESR34694.1| hypothetical protein
CICLE_v10004132mg [Citrus clementina]
Length = 1715
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/58 (60%), Positives = 41/58 (70%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
M TTE TE V+AV F LT EEVRKQS +++T P L D++ P PGGLYDP LGPL
Sbjct: 1 MNQTTEVTTESVKAVWFSFLTDEEVRKQSFLKLTEPLLLDRVSRPLPGGLYDPILGPL 58
>ref|XP_004513652.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1660
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/57 (63%), Positives = 40/57 (70%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGP 6
MA TEGAT V+AV F LT EE+ K S V+ITNP L D L +P GGLYDPALGP
Sbjct: 1 MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGP 57
>ref|XP_004513648.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Cicer
arietinum]
Length = 1650
Score = 71.6 bits (174), Expect = 1e-10
Identities = 36/57 (63%), Positives = 40/57 (70%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGP 6
MA TEGAT V+AV F LT EE+ K S V+ITNP L D L +P GGLYDPALGP
Sbjct: 1 MALATEGATNSVKAVAFSFLTDEEILKSSRVKITNPILLDTLHSPVAGGLYDPALGP 57
>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 70.9 bits (172), Expect = 2e-10
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
MA TTEGA+E V+ V F +T EEVRKQS+V++T P L D + P GGLYDPA+G L
Sbjct: 1 MAQTTEGASESVKVVTFSFMTNEEVRKQSVVKVTAPILLDGMGRPVSGGLYDPAMGSL 58
>ref|XP_006351332.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
tuberosum]
Length = 1675
Score = 70.1 bits (170), Expect = 3e-10
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -3
Query: 161 EGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
+GA+E VEAV F +T EEVR+ S+V++T+P L D L+ P P GLYDPA+GPL
Sbjct: 3 QGASEAVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPL 55
>ref|XP_002277555.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Vitis
vinifera]
Length = 1740
Score = 70.1 bits (170), Expect = 3e-10
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 5/92 (5%)
Frame = -3
Query: 263 YEESEQSPRSSEFEGLGGALKP*FESF-----TRMAHTTEGATECVEAVKFGILTYEEVR 99
+E +E++ ++E G+GG SF T T G TE VEAVKF T EEVR
Sbjct: 20 FESNEEN--TTEIGGIGGGGND--SSFACALVTAPVTATSGTTEFVEAVKFSFFTDEEVR 75
Query: 98 KQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
K S +IT+P + D ++ P PGGLYDPALG +
Sbjct: 76 KYSFKKITSPLMLDSVQRPVPGGLYDPALGSI 107
>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
lycopersicum]
Length = 1677
Score = 69.7 bits (169), Expect = 4e-10
Identities = 31/53 (58%), Positives = 41/53 (77%)
Frame = -3
Query: 161 EGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
+GA+E VEAV F +T EEVR+ S+V++T+P L D L+ P P GLYDPA+GPL
Sbjct: 3 QGASETVEAVHFSFMTDEEVRRHSVVKVTSPNLLDGLQLPVPNGLYDPAMGPL 55
>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
sinensis]
Length = 1715
Score = 68.6 bits (166), Expect = 9e-10
Identities = 34/58 (58%), Positives = 40/58 (68%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
M TTE TE V+AV F LT EEVRKQS +++ P L D++ P PGGLYDP LGPL
Sbjct: 1 MNQTTEVTTESVKAVWFSFLTDEEVRKQSFLKLKEPLLLDRVGRPLPGGLYDPILGPL 58
>emb|CAN70028.1| hypothetical protein VITISV_029145 [Vitis vinifera]
Length = 1350
Score = 68.2 bits (165), Expect = 1e-09
Identities = 32/53 (60%), Positives = 38/53 (71%)
Frame = -3
Query: 161 EGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
EG TE VEAVKF T EEVRK S +IT+P + D ++ P PGGLYDPALG +
Sbjct: 99 EGTTEFVEAVKFSFFTDEEVRKYSFKKITSPLMLDSVQRPVPGGLYDPALGSI 151
>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1651
Score = 65.9 bits (159), Expect = 6e-09
Identities = 34/57 (59%), Positives = 39/57 (68%)
Frame = -3
Query: 176 MAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGP 6
M TTEGAT VEAV F LT +E+R+ S V+IT+P L D L P P GLYD ALGP
Sbjct: 1 MVLTTEGATNSVEAVAFSFLTDDEIRRSSRVKITSPILVDFLLHPVPDGLYDAALGP 57
>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
Length = 1678
Score = 65.1 bits (157), Expect = 1e-08
Identities = 29/62 (46%), Positives = 42/62 (67%)
Frame = -3
Query: 188 SFTRMAHTTEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALG 9
SF R GA++ VE+V+F +T ++VRK S +++T+P L D + P PGGLYDP LG
Sbjct: 12 SFHRSVLFPMGASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLG 71
Query: 8 PL 3
P+
Sbjct: 72 PI 73
>ref|XP_004299740.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like
[Fragaria vesca subsp. vesca]
Length = 1673
Score = 63.5 bits (153), Expect = 3e-08
Identities = 29/50 (58%), Positives = 35/50 (70%)
Frame = -3
Query: 152 TECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
TE + AV F T EE KQS+++IT P L D+L TP GGLYDPA+GPL
Sbjct: 18 TESIRAVSFSFFTDEEASKQSVIKITKPDLVDELGTPVQGGLYDPAMGPL 67
>ref|XP_007145632.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
gi|561018822|gb|ESW17626.1| hypothetical protein
PHAVU_007G255400g [Phaseolus vulgaris]
Length = 1637
Score = 62.8 bits (151), Expect = 5e-08
Identities = 31/54 (57%), Positives = 37/54 (68%)
Frame = -3
Query: 164 TEGATECVEAVKFGILTYEEVRKQSLVRITNPTLFDQLETPKPGGLYDPALGPL 3
TEG T V+AV F LT +E+ + S V+ITNP L + L P GGLYDPALGPL
Sbjct: 5 TEGVTNSVKAVGFSFLTSDELLRSSRVKITNPILLNPLLNPVSGGLYDPALGPL 58