BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00038539
         (252 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN73049.1| hypothetical protein VITISV_009802 [Vitis vinifera]    68   1e-09
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    67   2e-09
emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera]    66   4e-09
emb|CAN75700.1| hypothetical protein VITISV_035987 [Vitis vinifera]    65   1e-08
emb|CAN83409.1| hypothetical protein VITISV_034065 [Vitis vinifera]    64   2e-08
emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]    64   2e-08
emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]    64   3e-08
emb|CAN75777.1| hypothetical protein VITISV_031053 [Vitis vinifera]    63   4e-08
emb|CBI31290.3| unnamed protein product [Vitis vinifera]               63   5e-08
emb|CAN64171.1| hypothetical protein VITISV_029601 [Vitis vinifera]    63   5e-08
emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]    63   5e-08
emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera]    62   6e-08
emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera]    62   6e-08
emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]    62   8e-08
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                   61   1e-07
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...    61   2e-07
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                   61   2e-07
gb|AAB82754.1| retrofit [Oryza longistaminata]                         61   2e-07
emb|CAN79518.1| hypothetical protein VITISV_026066 [Vitis vinifera]    61   2e-07
gb|ABA95065.1| retrotransposon protein, putative, Ty1-copia subc...    60   2e-07

>emb|CAN73049.1| hypothetical protein VITISV_009802 [Vitis vinifera]
          Length = 220

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFP 176
           +L VP I ++L+SIS+L  DN + VEFHS   LVKDKE  QVLL+G   DGLY+++ P
Sbjct: 135 ILLVPHIXKSLLSISRLXADNKVFVEFHSNVCLVKDKENHQVLLQGKLEDGLYKLHIP 192


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
           gi|531389|gb|AAA57005.1| copia-like retrotransposon
           Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLY 161
           VL VP   +NLIS+ +LTNDN++ +EFHS  +L+KD++T  VLL G  RDGLY
Sbjct: 382 VLHVPSTHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQTKAVLLHGKCRDGLY 434


>emb|CAN72498.1| hypothetical protein VITISV_010513 [Vitis vinifera]
          Length = 1394

 Score = 66.2 bits (160), Expect = 4e-09
 Identities = 37/76 (48%), Positives = 47/76 (61%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPIK 182
           VL VPQ+  NLIS+S+   DN +  EFHS  + VKD+ T Q LLKG  RDGLY+  FP  
Sbjct: 410 VLHVPQLSTNLISVSKFCTDNAVFFEFHSTHFFVKDQVTKQTLLKGWLRDGLYE--FPSS 467

Query: 183 TGSLNANSTVSLPKNT 230
           + +    ST S+P  T
Sbjct: 468 SSTHAFVSTSSVPALT 483


>emb|CAN75700.1| hypothetical protein VITISV_035987 [Vitis vinifera]
          Length = 1099

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 39/82 (47%), Positives = 50/82 (60%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPIK 182
           VLCVP +K+NLISISQ    NN+ +EF    +LVKD +T   LLKG T+DG+Y+  +PI 
Sbjct: 451 VLCVPTMKKNLISISQFCTSNNVSIEFLPTAFLVKDIQTRTTLLKGNTKDGVYE--WPIS 508

Query: 183 TGSLNANSTVSLPKNTLSTCSQ 248
              L  +S     K TLS   Q
Sbjct: 509 PPLLAFSSR----KTTLSEWHQ 526


>emb|CAN83409.1| hypothetical protein VITISV_034065 [Vitis vinifera]
          Length = 403

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
 Frame = +3

Query: 6   LCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQV-NFPIK 182
           LCVP I +NLIS+   T  NN+I+EFH  ++LVKD+ T ++LL+G   +G+Y + + P+ 
Sbjct: 308 LCVPTINKNLISVHHFTKQNNVILEFHPTYFLVKDRRTGEILLQGPCENGVYPLPSSPVA 367

Query: 183 T 185
           T
Sbjct: 368 T 368


>emb|CAN66863.1| hypothetical protein VITISV_013500 [Vitis vinifera]
          Length = 1112

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 36/78 (46%), Positives = 46/78 (58%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPIK 182
           VLCVP +KRNLISISQ    NN  +EF    + VKD  T  +LL+G T+DG+Y+  +P+ 
Sbjct: 215 VLCVPTMKRNLISISQFCKSNNTSIEFLPSSFHVKDLHTGAILLQGRTKDGVYE--WPLS 272

Query: 183 TGSLNANSTVSLPKNTLS 236
           T         S  K TLS
Sbjct: 273 TTQSXPLIAFSSVKTTLS 290


>emb|CAN77680.1| hypothetical protein VITISV_040762 [Vitis vinifera]
          Length = 590

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 26/52 (50%), Positives = 38/52 (73%)
 Frame = +3

Query: 6   LCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLY 161
           LCVP I +NLIS+   T  NN+I+EFH  ++LVKD+ T ++LL+G   +G+Y
Sbjct: 357 LCVPTINKNLISVHHFTKQNNVILEFHPTYFLVKDRRTGEILLQGPCENGVY 408


>emb|CAN75777.1| hypothetical protein VITISV_031053 [Vitis vinifera]
          Length = 742

 Score = 63.2 bits (152), Expect = 4e-08
 Identities = 33/73 (45%), Positives = 49/73 (67%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPIK 182
           VL VPQI +NLIS+++ T DN++I+EF S    VKDK++ ++LL+G  ++GLYQ++  I 
Sbjct: 204 VLHVPQITKNLISVAKFTQDNDVILEFDSHCCFVKDKKSREILLQGNXKEGLYQLD--IS 261

Query: 183 TGSLNANSTVSLP 221
             S N      LP
Sbjct: 262 KVSSNRQFXXQLP 274


>emb|CBI31290.3| unnamed protein product [Vitis vinifera]
          Length = 1201

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 38/83 (45%), Positives = 50/83 (60%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPIK 182
           VL VPQ+  NLIS+S+   DNN I+EFH   + VKDK+T   LL+G    GLY+  FP  
Sbjct: 505 VLYVPQLTSNLISVSKFCTDNNTIMEFHPSSFFVKDKDTKVTLLQGQLERGLYK--FP-- 560

Query: 183 TGSLNANSTVSLPKNTLSTCSQP 251
           T S+ ++ T SL      T +QP
Sbjct: 561 TSSI-SSPTASLKHQVFLTKTQP 582


>emb|CAN64171.1| hypothetical protein VITISV_029601 [Vitis vinifera]
          Length = 435

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 28/56 (50%), Positives = 44/56 (78%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVN 170
           VL VPQI +NLIS+++ T DN++I+EF S    VKDK++ ++LL+G  ++GLYQ++
Sbjct: 52  VLHVPQITKNLISVAKFTQDNDVILEFDSHCCFVKDKKSREILLQGNLKEGLYQLD 107


>emb|CAN74951.1| hypothetical protein VITISV_030567 [Vitis vinifera]
          Length = 2203

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 28/56 (50%), Positives = 44/56 (78%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVN 170
           VL VPQI +NLIS+++ T DN++I+EF S    VKDK++ ++LL+G  ++GLYQ++
Sbjct: 325 VLHVPQITKNLISVAKFTQDNDVILEFDSHCCFVKDKKSREILLQGNLKEGLYQLD 380


>emb|CAN64288.1| hypothetical protein VITISV_022326 [Vitis vinifera]
          Length = 1508

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 36/76 (47%), Positives = 45/76 (59%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPIK 182
           VL VPQ+  NLIS+S+   DN     FHS  + VKD+ T Q LLKG  RDGLY+  FP  
Sbjct: 615 VLHVPQLSTNLISVSKFCTDNAXFFXFHSTHFFVKDQVTKQTLLKGWLRDGLYE--FPSS 672

Query: 183 TGSLNANSTVSLPKNT 230
           + +    ST S+P  T
Sbjct: 673 SSTHAFVSTSSVPXLT 688


>emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera]
          Length = 1272

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQ 164
           VL VP +  NLIS+S+   DN +  EFHS ++ VKD+ T ++LLKG  RDGLY+
Sbjct: 405 VLHVPHLSTNLISVSKFCTDNAVFFEFHSSYFFVKDQVTKKILLKGWLRDGLYE 458


>emb|CAN82380.1| hypothetical protein VITISV_021579 [Vitis vinifera]
          Length = 828

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 28/54 (51%), Positives = 38/54 (70%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQ 164
           VL VP +  NLIS+S+   DN +  EFHS ++ VKD+ T ++LLKG  RDGLY+
Sbjct: 308 VLHVPHLSTNLISVSKFCTDNVVFFEFHSSYFFVKDQVTKKILLKGWLRDGLYE 361


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 33/78 (42%), Positives = 46/78 (58%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPIK 182
           VL VPQ K++LIS SQL  DN+  +E HS F+ +KD+ T  +LL+G  R GLY +  P  
Sbjct: 381 VLYVPQAKKSLISASQLATDNSAFLELHSKFFSIKDQVTKDILLEGRCRHGLYPI--PKS 438

Query: 183 TGSLNANSTVSLPKNTLS 236
            G   +   +   K +LS
Sbjct: 439 FGRTTSKQALGTTKLSLS 456


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
           sativa Japonica Group]
          Length = 1448

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQV 167
           VL VPQ K+NLIS SQL  DN+  +E HS F+ +KD+ T  VLL+G  R GLY +
Sbjct: 384 VLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPI 438


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQV 167
           VL VPQ K+NLIS SQL  DN+  +E HS F+ +KD+ T  VLL+G  R GLY +
Sbjct: 384 VLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPI 438


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQV 167
           VL VPQ K+NLIS SQL  DN+  +E HS F+ +KD+ T  VLL+G  R GLY +
Sbjct: 380 VLYVPQAKKNLISASQLAADNSAFLELHSKFFSIKDQVTRDVLLEGKCRHGLYPI 434


>emb|CAN79518.1| hypothetical protein VITISV_026066 [Vitis vinifera]
          Length = 532

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 26/52 (50%), Positives = 37/52 (71%)
 Frame = +3

Query: 6   LCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLY 161
           LCVP I++NLIS+   T  NN+ +EFH  ++LVK++ T  +LLKG   DG+Y
Sbjct: 393 LCVPTIQKNLISVHHFTKHNNVYLEFHPTYFLVKNRITEAILLKGECEDGVY 444


>gb|ABA95065.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 825

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 32/74 (43%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
 Frame = +3

Query: 3   VLCVPQIKRNLISISQLTNDNNIIVEFHSGFWLVKDKETSQVLLKGTTRDGLYQVNFPI- 179
           VL VPQ K++L+S SQL  DN+  +E HS F+ +KD+ T  +LL+G  R GLY ++ P  
Sbjct: 365 VLYVPQAKKSLVSASQLAADNSAFLELHSKFFSIKDQFTRDILLEGRCRHGLYPIHKPFG 424

Query: 180 KTGSLNANSTVSLP 221
           ++ S      V LP
Sbjct: 425 QSTSKQVLGAVKLP 438