BLASTX nr result
ID: Cocculus23_contig00038486
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00038486
(485 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group] 74 3e-11
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 69 9e-10
gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subc... 66 6e-09
emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera] 66 6e-09
emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera] 64 2e-08
gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subc... 63 4e-08
emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera] 63 4e-08
gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subc... 63 4e-08
gb|AAP21398.1| putative gag-pol polyprotein [Oryza sativa Japoni... 63 4e-08
emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera] 61 2e-07
emb|CAD40946.1| OSJNBa0027G07.12 [Oryza sativa Japonica Group] 60 2e-07
ref|NP_001056109.1| Os05g0527300 [Oryza sativa Japonica Group] g... 60 3e-07
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 60 3e-07
gb|AAU90262.1| integrase core domain containing protein [Oryza s... 60 3e-07
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 60 3e-07
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 60 3e-07
emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera] 60 4e-07
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat... 59 5e-07
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 59 7e-07
emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis ... 59 7e-07
>gb|AAU10682.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 73.6 bits (179), Expect = 3e-11
Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 6/108 (5%)
Frame = -2
Query: 307 SNLSQSSQGRGNFN-GCGYFS-----GGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHV 146
+N +++ G GNFN G GYFS GGRG+ RGG + N NF+PR CQL K+GHV
Sbjct: 227 ANHGRNNGGGGNFNNGGGYFSNRGRGGGRGD-RGGCGRGNGGRNFKPRPTCQLCSKVGHV 285
Query: 145 VFNCWHRFDENFVPITNESRQVSNPSAQMVAMVADSQI*CDNDWYPDS 2
V +CWH +D++FVP VA A + D++WY D+
Sbjct: 286 VADCWHCYDDSFVPDAR------------VAAAASYGV--DSNWYVDT 319
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 68.6 bits (166), Expect = 9e-10
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 12/106 (11%)
Frame = -2
Query: 283 GRG---NFNGCGYFSGGRGN-NRGGKPQRNQWN--NFRPRSQCQLYGKLGHVVFNCWHRF 122
GRG N+NG G RG N+G R WN N + CQL GK+GHVV C++RF
Sbjct: 268 GRGFNWNYNGRSNRGGFRGRGNKGSFQARPPWNSDNQNEKPACQLCGKIGHVVAQCYYRF 327
Query: 121 DENFVPITNESRQVSNP------SAQMVAMVADSQI*CDNDWYPDS 2
D F N S + S+P S Q+ ++ S++ D++WYPDS
Sbjct: 328 DHTFQVPQNLSSRNSSPRAYYSFSPQVNGVIPTSEVFSDDNWYPDS 373
>gb|ABA95367.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 807
Score = 65.9 bits (159), Expect = 6e-09
Identities = 40/96 (41%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Frame = -2
Query: 283 GRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFR--PRSQCQLYGKLGHVVFNCWHRFDENF 110
G NF G G GG RG P RN+ N R PR CQ+ K GHV CWHRFDEN+
Sbjct: 211 GGANFPG-GNGGGGNSRGRGYTPARNRGNQQRVDPRPICQVCYKRGHVAAKCWHRFDENY 269
Query: 109 VPITNESRQVSNPSAQMVAMVADSQI*CDNDWYPDS 2
V P + VA A + D +WY DS
Sbjct: 270 V-----------PDERHVAAAAQAAYAVDTNWYIDS 294
>emb|CAN59952.1| hypothetical protein VITISV_006720 [Vitis vinifera]
Length = 1365
Score = 65.9 bits (159), Expect = 6e-09
Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Frame = -2
Query: 307 SNLSQSSQGRGNFNGCGYFSGGRGNN------------RGGKPQRN--QWNNFRPRSQCQ 170
+N + SS RG G ++GGRG N RGG+ ++ Q ++ R QCQ
Sbjct: 232 ANYASSSNNRG---GGRKYNGGRGPNFMMTNSNFRGRGRGGRYGQSGRQNSSSSERPQCQ 288
Query: 169 LYGKLGHVVFNCWHRFDENFVPITNESRQVSNP--SAQMVAMVADSQI*CDNDWYPDS 2
L GK GH V C+HRFD F N + VSN S M AMVA S D++WY DS
Sbjct: 289 LCGKFGHTVQVCYHRFDITFQSTQNNTTGVSNSGNSNSMPAMVASSNNLADDNWYLDS 346
>emb|CAN66823.1| hypothetical protein VITISV_003499 [Vitis vinifera]
Length = 763
Score = 63.9 bits (154), Expect = 2e-08
Identities = 51/176 (28%), Positives = 69/176 (39%), Gaps = 15/176 (8%)
Frame = -2
Query: 484 LLLAQEARIEKNLKLTDGTNMMVHMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFYQS 305
LLLAQEARIEK+ K D V++ +
Sbjct: 61 LLLAQEARIEKHNKNVDSETASVNITQGSGNFGRGNFSQGRGFISNNQFSPNFGRGNF-- 118
Query: 304 NLSQSSQGRGNFNGCGYFSGGRGNNRGGKPQRNQWNNF----RPRSQCQLYGKLGHVVFN 137
S +GRG F G G+F N GG+ N WNN + CQL K+GH V
Sbjct: 119 ----SPRGRGGFQGXGHF------NNGGRRSWNTWNNNVIANAEKMVCQLCMKIGHSVDR 168
Query: 136 CWHRFDEN--------FVPITNESRQV---SNPSAQMVAMVADSQI*CDNDWYPDS 2
C++++D + F P S Q M ++A + CD +WYPDS
Sbjct: 169 CYYKYDPSFQGPRTLGFTPSFQRSPQTQVQGGNKPNMQVLMATLENICDTNWYPDS 224
>gb|ABA94311.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 339
Score = 63.2 bits (152), Expect = 4e-08
Identities = 35/102 (34%), Positives = 48/102 (47%)
Frame = -2
Query: 310 QSNLSQSSQGRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCW 131
+ N + + +GRGN GCG +GGRG + G PR CQL GK GH V CW
Sbjct: 216 RGNNNNNFRGRGN-GGCGRGNGGRGGGQQG-----------PRPVCQLCGKTGHTVIKCW 263
Query: 130 HRFDENFVPITNESRQVSNPSAQMVAMVADSQI*CDNDWYPD 5
+RFD+ + P ++ A +S D +WY D
Sbjct: 264 YRFDQTY-----------QPEEKVAAAATNSAYGVDTNWYVD 294
>emb|CAN81355.1| hypothetical protein VITISV_039158 [Vitis vinifera]
Length = 1402
Score = 63.2 bits (152), Expect = 4e-08
Identities = 43/99 (43%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Frame = -2
Query: 283 GRG-NF--NGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCWHRFDEN 113
GRG NF + GRG G ++N ++ RP QCQL GK GH V C+HRFD
Sbjct: 250 GRGPNFMMTNSNFRGRGRGXRYGQSGRQNSSSSERP--QCQLCGKFGHTVQVCYHRFDIT 307
Query: 112 FVPITNESRQVSNP--SAQMVAMVADSQI*CDNDWYPDS 2
F N + VSN S M AMVA S D++WY DS
Sbjct: 308 FQSTQNNTTGVSNSGNSNXMPAMVAXSNNXADDNWYLDS 346
>gb|ABG00000.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2074
Score = 63.2 bits (152), Expect = 4e-08
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 17/82 (20%)
Frame = -2
Query: 298 SQSSQGRGNFNGCGYFSG-----------GRGNNRGGKPQRNQWN------NFRPRSQCQ 170
S +S RG G G FS GRG RG + R + N + +PRS CQ
Sbjct: 1184 SVNSARRGGKGGGGGFSNNVNTGNTGAFRGRGGGRGDRGGRGRGNGGGARFSNKPRSTCQ 1243
Query: 169 LYGKLGHVVFNCWHRFDENFVP 104
L GK+GHVV +CW+R+DENF+P
Sbjct: 1244 LCGKIGHVVADCWYRYDENFIP 1265
>gb|AAP21398.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 461
Score = 63.2 bits (152), Expect = 4e-08
Identities = 35/82 (42%), Positives = 45/82 (54%), Gaps = 17/82 (20%)
Frame = -2
Query: 298 SQSSQGRGNFNGCGYFSG-----------GRGNNRGGKPQRNQWN------NFRPRSQCQ 170
S +S RG G G FS GRG RG + R + N + +PRS CQ
Sbjct: 105 SVNSARRGGKGGGGGFSNNVNTGNTGAFRGRGGGRGDRGGRGRGNGGGARFSNKPRSTCQ 164
Query: 169 LYGKLGHVVFNCWHRFDENFVP 104
L GK+GHVV +CW+R+DENF+P
Sbjct: 165 LCGKIGHVVADCWYRYDENFIP 186
>emb|CAN63649.1| hypothetical protein VITISV_037657 [Vitis vinifera]
Length = 1131
Score = 60.8 bits (146), Expect = 2e-07
Identities = 35/94 (37%), Positives = 45/94 (47%)
Frame = -2
Query: 283 GRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCWHRFDENFVP 104
GRG+FN Y S N GG +N +P QCQ+ GK GH+ NC+HRFD+ + P
Sbjct: 229 GRGSFNNHSYSSRNFNNVSGG-------SNGKP--QCQVCGKYGHIAINCYHRFDQTYQP 279
Query: 103 ITNESRQVSNPSAQMVAMVADSQI*CDNDWYPDS 2
N + AMVA D WY D+
Sbjct: 280 TMNN---------HLAAMVATPSTVGDESWYMDT 304
>emb|CAD40946.1| OSJNBa0027G07.12 [Oryza sativa Japonica Group]
Length = 501
Score = 60.5 bits (145), Expect = 2e-07
Identities = 42/115 (36%), Positives = 49/115 (42%), Gaps = 18/115 (15%)
Frame = -2
Query: 292 SSQGRGNF----NGCGYFSGGRGNNRGGKPQRN--------------QWNNFRPRSQCQL 167
+S+GRG F G G SGG G R P N Q PR CQ+
Sbjct: 374 ASRGRGGFIPRSGGNGGGSGGSGRGRSAPPANNGGRGRGNMPRGRGQQQQRTDPRPICQV 433
Query: 166 YGKLGHVVFNCWHRFDENFVPITNESRQVSNPSAQMVAMVADSQI*CDNDWYPDS 2
K GHV CWHRFDEN+VP + R V+ A S D +WY DS
Sbjct: 434 CYKRGHVAAECWHRFDENYVP---DDRHVA-------AAAQASSYAIDTNWYIDS 478
>ref|NP_001056109.1| Os05g0527300 [Oryza sativa Japonica Group]
gi|113579660|dbj|BAF18023.1| Os05g0527300 [Oryza sativa
Japonica Group] gi|215697357|dbj|BAG91351.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 363
Score = 60.1 bits (144), Expect = 3e-07
Identities = 30/67 (44%), Positives = 36/67 (53%)
Frame = -2
Query: 304 NLSQSSQGRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCWHR 125
N +GRG N GRGNN G +P N R +CQL K GH V NCW+R
Sbjct: 240 NTGNGGRGRGGNNNGANRGRGRGNNGGARPPGGVDN----RPKCQLCYKRGHTVINCWYR 295
Query: 124 FDENFVP 104
+DE+FVP
Sbjct: 296 YDEDFVP 302
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = -2
Query: 304 NLSQSSQGRGNFN----GCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFN 137
N +QGRG N G G GG G GG + N R CQ+ K GHVV +
Sbjct: 226 NRGSGNQGRGGGNPRGRGTGRGGGGSGGRGGGHGRGNGRGGTDNRPTCQVCHKKGHVVAD 285
Query: 136 CWHRFDENFVP 104
CWHR+DEN+VP
Sbjct: 286 CWHRYDENYVP 296
>gb|AAU90262.1| integrase core domain containing protein [Oryza sativa Japonica
Group] gi|108710062|gb|ABF97857.1| retrotransposon
protein, putative, Ty1-copia subclass, expressed [Oryza
sativa Japonica Group]
Length = 1021
Score = 60.1 bits (144), Expect = 3e-07
Identities = 36/97 (37%), Positives = 48/97 (49%)
Frame = -2
Query: 292 SSQGRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCWHRFDEN 113
++ GR + NG G GGRGNN G + +P C L GK GHVV +CW+R+DEN
Sbjct: 247 NNNGRRSNNGGG--RGGRGNNNGDR-------GGKPHPVCHLCGKTGHVVADCWYRYDEN 297
Query: 112 FVPITNESRQVSNPSAQMVAMVADSQI*CDNDWYPDS 2
FVP +A A + D +WY D+
Sbjct: 298 FVP------------ENKIAAAASYGV--DTNWYVDT 320
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 60.1 bits (144), Expect = 3e-07
Identities = 30/67 (44%), Positives = 36/67 (53%)
Frame = -2
Query: 304 NLSQSSQGRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCWHR 125
N +GRG N GRGNN G +P N R +CQL K GH V NCW+R
Sbjct: 240 NTGNGGRGRGGNNNGANRGRGRGNNGGARPPGGVDN----RPKCQLCYKRGHTVINCWYR 295
Query: 124 FDENFVP 104
+DE+FVP
Sbjct: 296 YDEDFVP 302
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/71 (43%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Frame = -2
Query: 304 NLSQSSQGRGNFN----GCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFN 137
N +QGRG N G G GG G GG + N R CQ+ K GHVV +
Sbjct: 226 NRGSGNQGRGGGNPRGRGTGRGGGGSGGRGGGHGRGNGRGGTDNRPTCQVCHKKGHVVAD 285
Query: 136 CWHRFDENFVP 104
CWHR+DEN+VP
Sbjct: 286 CWHRYDENYVP 296
>emb|CAN69851.1| hypothetical protein VITISV_009554 [Vitis vinifera]
Length = 1282
Score = 59.7 bits (143), Expect = 4e-07
Identities = 42/120 (35%), Positives = 59/120 (49%), Gaps = 18/120 (15%)
Frame = -2
Query: 307 SNLSQSSQGRGNFNGCGYFSGGRGNN--------------RGGKPQRNQWNNFRP--RSQ 176
+N + SS RG G ++GGRG N RGG+ +N+ +N + Q
Sbjct: 232 ANYASSSNSRG---GGRRYNGGRGQNHTPNTSNYTYRGSGRGGRYGQNERHNSNSSEKPQ 288
Query: 175 CQLYGKLGHVVFNCWHRFDENFVPITNESRQVSNPS--AQMVAMVADSQI*CDNDWYPDS 2
CQL GK G+ V C+HRFD ++ + + SN S + AMVA S D+ WY DS
Sbjct: 289 CQLCGKFGYTVQICYHRFDISYQSSQSSNTSPSNASNPNSIPAMVASSNYLADDTWYLDS 348
>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
gi|31430072|gb|AAP52036.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1058
Score = 59.3 bits (142), Expect = 5e-07
Identities = 37/102 (36%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Frame = -2
Query: 304 NLSQSSQGRGNFNGCGYFSG-GRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCWH 128
N Q+S + GCG G G NNRGG R + + +P+ CQL GK+GH V CW
Sbjct: 179 NALQASANAMSRGGCGGGHGQGGNNNRGGGSGRGRGDG-KPKPTCQLCGKVGHTVAKCWK 237
Query: 127 RFDENFVPITNESRQVSNPSAQMVAMVADSQI*CDNDWYPDS 2
RFD +F T E + + + S D +WY DS
Sbjct: 238 RFDPSF---TREEKSANTAA-------TSSSYGIDTNWYVDS 269
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 58.9 bits (141), Expect = 7e-07
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = -2
Query: 286 QGRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNCWHRFDENFV 107
+GRG G G+ S GRGNN G + + RPR CQ+ ++GH NCW+RFDEN+V
Sbjct: 250 RGRGPSRG-GFQSFGRGNNYSGATDAD--TSSRPR--CQVCSRVGHTALNCWYRFDENYV 304
Query: 106 PITNESRQVSNPSAQMVAMVADS 38
P + ++ + V D+
Sbjct: 305 PDQRSANSAAHQNGSNVPWYTDT 327
>emb|CDH30699.1| putative Ty1-copia-like retrotransposon [Cercis chinensis]
Length = 646
Score = 58.9 bits (141), Expect = 7e-07
Identities = 32/104 (30%), Positives = 49/104 (47%)
Frame = -2
Query: 313 YQSNLSQSSQGRGNFNGCGYFSGGRGNNRGGKPQRNQWNNFRPRSQCQLYGKLGHVVFNC 134
YQ N S + + + +G RGG + + N R QCQ+ K+GHV C
Sbjct: 269 YQQNFHHSQTPVTATHNFNHRNSSQGGFRGGHSNKGRANP-GSRPQCQICCKIGHVATEC 327
Query: 133 WHRFDENFVPITNESRQVSNPSAQMVAMVADSQI*CDNDWYPDS 2
WHRFD F P + S Q S+ + A++A + + W+ D+
Sbjct: 328 WHRFDNQFQPKASHSNQFSSSAQDPQALMAAPGLLGETPWFLDT 371