BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00037887
         (693 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    97   7e-18
ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [The...    84   3e-14
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun...    81   3e-13
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    77   5e-12
ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prun...    77   5e-12
ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citr...    77   7e-12
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr...    77   7e-12
ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citr...    77   7e-12
ref|XP_006387518.1| hypothetical protein POPTR_0907s00020g [Popu...    75   3e-11
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    72   2e-10
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...    72   2e-10
gb|ABD96891.1| hypothetical protein [Cleome spinosa]                   72   2e-10
ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    70   9e-10
ref|XP_006389213.1| hypothetical protein POPTR_0035s003301g, par...    69   1e-09
ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Popu...    67   6e-09
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras...    66   1e-08
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer...    65   2e-08
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras...    65   2e-08
ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Popu...    64   4e-08
ref|XP_004491957.1| PREDICTED: DNA-directed RNA polymerase 2, ch...    63   1e-07

>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial [Vitis vinifera]
           gi|298204431|emb|CBI16911.3| unnamed protein product
           [Vitis vinifera]
          Length = 1035

 Score = 96.7 bits (239), Expect = 7e-18
 Identities = 74/184 (40%), Positives = 102/184 (55%), Gaps = 19/184 (10%)
 Frame = +1

Query: 196 VSANLSYKLGCSVSINKACLIIARPISLKQESREMWRNVAKQAV--------------CS 333
           +SANL   L   +S  K      RP  LK+ +  MWRN+AK+A+               S
Sbjct: 9   LSANLGRDLDLIISFEKPTNF--RPNPLKKPT-VMWRNIAKRAIPRAPRKCVYLDSQPLS 65

Query: 334 R--NLMRFSRNSVFQN--KSRDFDSNKRLITGFYDVGLRGNGEQSSREEDNGRSSFRCRQ 501
           R  + + FS++ +F    K   F+ +    +GF ++G R  GE SSRE+  GR SF C +
Sbjct: 66  RRYSFLGFSQDLIFPEIMKFGTFEPSSCSSSGFSEMGFRRIGEISSREDAVGRPSFGCLR 125

Query: 502 IPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEMCKDEKKGFEFRQQR 678
               N   FS   PK YASVAEAVSSTD EEDVS+ DEI+ LL EM K+EK+   F+++ 
Sbjct: 126 ----NQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNFKRRE 181

Query: 679 QTKL 690
           + K+
Sbjct: 182 KLKM 185


>ref|XP_007032921.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
           gi|508711950|gb|EOY03847.1| DNA/RNA polymerases
           superfamily protein [Theobroma cacao]
          Length = 1100

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 69/191 (36%), Positives = 99/191 (51%), Gaps = 22/191 (11%)
 Frame = +1

Query: 172 MSCIDHLFVSANLSYKLGCSVSINKA--CLIIARPISLKQESREMWRNVAKQAVCSR--- 336
           MS I+   +S+NL  K    V ++     ++   P  +   S  MWRN+AK A+  R   
Sbjct: 1   MSIIETPLISSNLLDKFDHFVPLDNRNPSILYQNPPKI---SIVMWRNIAKHAISRRTHS 57

Query: 337 --------NLMRFSRNSVFQNKSR-------DFDSNKRLITGFYDVGLRGNGEQSSREED 471
                   + +  S++S+F  KS+        F SN R    F D+G R  GE  +  E 
Sbjct: 58  FQCFARTYSFLGTSQDSIFHEKSKFRGLKFGSFCSNSR----FLDMGGRRIGEVLTNVEY 113

Query: 472 NGRSSFRC--RQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEMCKD 645
            G+ SF     +I CS +      P+GY SVAEAVSSTD EEDVS V+EIK LL+EM K+
Sbjct: 114 IGKQSFGSPRNEIGCSGLC-----PRGYVSVAEAVSSTDVEEDVSVVEEIKELLDEMKKE 168

Query: 646 EKKGFEFRQQR 678
           +++    R++R
Sbjct: 169 QRRETGNRRRR 179


>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
           gi|462411068|gb|EMJ16117.1| hypothetical protein
           PRUPE_ppa000719mg [Prunus persica]
          Length = 1024

 Score = 81.3 bits (199), Expect = 3e-13
 Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
 Frame = +1

Query: 289 SREMWRNVAKQAVCSR-----NLMRFSR---------NSVFQNKSRDFDSNKRLITGFYD 426
           S  +WRN AKQA+  +     N   FSR          SVF    + F+ +      F +
Sbjct: 33  STTVWRNFAKQAISRKQRFHINSQSFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSE 92

Query: 427 VGLRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSV 606
           VG RG G  SS E+   + SF   + P    + F   PKGYASVAEAVSSTD EE+VS V
Sbjct: 93  VGFRGKGAISSPEDCMCKPSFWSVRNPIW-FNGFC--PKGYASVAEAVSSTDVEEEVSVV 149

Query: 607 DEIKGLLEEMCKDEKKGFEFRQQ 675
           DE++ LL++M  +EK+  +++Q+
Sbjct: 150 DEVQELLQQMSIEEKREAQYKQR 172


>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Citrus sinensis]
          Length = 1026

 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 8/131 (6%)
 Frame = +1

Query: 289 SREMWRNVAKQAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 444
           S  MWRNVAKQA+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 445 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 624
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 625 LEEMCKDEKKG 657
           L+EM K+++ G
Sbjct: 158 LQEMKKEQQSG 168


>ref|XP_007225383.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
           gi|462422319|gb|EMJ26582.1| hypothetical protein
           PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 77.0 bits (188), Expect = 5e-12
 Identities = 48/130 (36%), Positives = 72/130 (55%), Gaps = 14/130 (10%)
 Frame = +1

Query: 298 MWRNVAKQAVC--------------SRNLMRFSRNSVFQNKSRDFDSNKRLITGFYDVGL 435
           MWRN+AKQ                 S   M FS+ S F +K+R F++ K +      +G 
Sbjct: 1   MWRNLAKQVASRKTNLSSQSHFGSPSSTSMIFSQESSFLDKARHFEARKCINNRILVMGF 60

Query: 436 RGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEI 615
           R  G+ +S++E+ GR S      P   +S F +  KGYASVAEA++STD EED S  +EI
Sbjct: 61  RQVGDMASQKEELGRCSSLNPSYPYG-ISGFCNYAKGYASVAEAIASTDGEEDSSGSEEI 119

Query: 616 KGLLEEMCKD 645
           + +LE++ ++
Sbjct: 120 QEMLEDLIRE 129


>ref|XP_006430989.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533046|gb|ESR44229.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 928

 Score = 76.6 bits (187), Expect = 7e-12
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
 Frame = +1

Query: 289 SREMWRNVAKQAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 444
           S  MWRNVAKQA+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 445 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 624
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 625 LEEMCKDEKK 654
           L+EM K+E++
Sbjct: 158 LQEMKKEEQR 167


>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533045|gb|ESR44228.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 1030

 Score = 76.6 bits (187), Expect = 7e-12
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
 Frame = +1

Query: 289 SREMWRNVAKQAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 444
           S  MWRNVAKQA+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 445 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 624
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 625 LEEMCKDEKK 654
           L+EM K+E++
Sbjct: 158 LQEMKKEEQR 167


>ref|XP_006430987.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
           gi|557533044|gb|ESR44227.1| hypothetical protein
           CICLE_v10010966mg [Citrus clementina]
          Length = 933

 Score = 76.6 bits (187), Expect = 7e-12
 Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
 Frame = +1

Query: 289 SREMWRNVAKQAVCSRNLMRFSRNSVFQNKSRD--------FDSNKRLITGFYDVGLRGN 444
           S  MWRNVAKQA+       FSR   F   S+D        F     +  G ++VG    
Sbjct: 44  SSVMWRNVAKQAISLHLKKPFSRAYSFLGISQDSILREKVKFGCLDMVPRGIHEVGSGRI 103

Query: 445 GEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGL 624
           GE  + E+  GR+SF   +    N + +   P+GYA+VAEAVSSTD EEDVS V+EI+ L
Sbjct: 104 GEILNHEDYMGRTSFGVLK----NDNFWC--PRGYATVAEAVSSTDVEEDVSIVEEIQEL 157

Query: 625 LEEMCKDEKK 654
           L+EM K+E++
Sbjct: 158 LQEMKKEEQR 167


>ref|XP_006387518.1| hypothetical protein POPTR_0907s00020g [Populus trichocarpa]
           gi|550307443|gb|ERP46432.1| hypothetical protein
           POPTR_0907s00020g [Populus trichocarpa]
          Length = 153

 Score = 74.7 bits (182), Expect = 3e-11
 Identities = 57/139 (41%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
 Frame = +1

Query: 298 MWRNVAKQAVC-----SRNLMRFSRNSVFQNKSRD---FDSNK--RLITGFYDVGLRGNG 447
           MWRNVAKQA       S N   F R   F   S++   F+  K   L      +  R  G
Sbjct: 1   MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSLYNTSPRLSFRAIG 60

Query: 448 EQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDVSSVDEIKG 621
           E S+ E+  G+ SF   R    +N +      P+GY SVAEAVSSTD E+DVS  DE++ 
Sbjct: 61  EISTHEDFMGKPSFIFLRNSDSTNGNRCGGFCPRGYVSVAEAVSSTDVEDDVSGADEVRE 120

Query: 622 LLEEMCKDEKKGFEFRQQR 678
           LL EM K+E+K   FR++R
Sbjct: 121 LLPEMRKEEEKEEHFRRRR 139


>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 1019

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 59/156 (37%), Positives = 80/156 (51%), Gaps = 20/156 (12%)
 Frame = +1

Query: 283 QESREMWRNVAKQ---------AVCSRN----LMRFSRNSVFQNKS--RDFDSNKRLITG 417
           Q S  MWRN+ KQ          + S+N     + F ++SVF++K   R F       +G
Sbjct: 26  QNSPIMWRNIVKQFSSRTPQKILLTSKNRTYSFLGFGQDSVFKDKRILRSFIPVSCSNSG 85

Query: 418 FYDVGLRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRP---KGYASVAEAV--SSTD 582
           F ++G +  GE            F  R + C+  S  S+     K YASVAEAV  SSTD
Sbjct: 86  FLEMGFQNLGEFDE---------FLRRPLLCAMKSQVSNNDICRKSYASVAEAVAVSSTD 136

Query: 583 TEEDVSSVDEIKGLLEEMCKDEKKGFEFRQQRQTKL 690
            EEDVS V E++ LL E+ K+EKK F FR++ Q  L
Sbjct: 137 AEEDVSVVGEVQELLTELKKEEKKQFTFRRRNQRLL 172


>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial-like [Solanum lycopersicum]
          Length = 1022

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 58/151 (38%), Positives = 80/151 (52%), Gaps = 20/151 (13%)
 Frame = +1

Query: 298 MWRNVAKQ---------AVCSRN----LMRFSRNSVFQNKS--RDFDSNKRLITGFYDVG 432
           MWRN+ KQ          + S+N     + F  +SVF++K   R F       +GF ++G
Sbjct: 31  MWRNIVKQFSTRTPQKILLTSKNHAYSYLGFGLHSVFKDKRTLRSFIPVSCSNSGFLEMG 90

Query: 433 LRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRP---KGYASVAEAV--SSTDTEEDV 597
            +  GE    +E      F  R + C+  S  S+     K YASVAEAV  SSTD EEDV
Sbjct: 91  FQNLGEFLPGDE------FLRRPLLCAMKSQVSNNDICRKNYASVAEAVAVSSTDAEEDV 144

Query: 598 SSVDEIKGLLEEMCKDEKKGFEFRQQRQTKL 690
           S V E++ LL E+ K+EKK F FR+++Q  L
Sbjct: 145 SVVGEVQELLTELKKEEKKQFTFRRRKQRML 175


>gb|ABD96891.1| hypothetical protein [Cleome spinosa]
          Length = 1021

 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
 Frame = +1

Query: 286 ESREMWRNVAKQ---------AVC--SRNLMRFSRNSVFQNKS--RDFDSNKRLITGFYD 426
           +S  MWRN+AKQ         +VC  SR L+ FS  S+F      R         +GF+D
Sbjct: 36  QSSAMWRNIAKQTISRSPVRLSVCRQSRGLLGFSSESIFPEIFIFRPSVIGPISSSGFHD 95

Query: 427 VGLRGNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSV 606
           +G     E  +  + +GR  F   +  C     FS  P+ Y + AEAVSSTD EED S V
Sbjct: 96  MGYSRTCEIPAPGDFSGRPGFGFLKDECC-FHRFS--PRSYVNAAEAVSSTDIEEDASVV 152

Query: 607 DEIKGLLEEMCKDEKK 654
           DE++ LL EM K+EKK
Sbjct: 153 DEVQELLREMKKEEKK 168


>ref|XP_004491958.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like isoform X2 [Cicer
           arietinum]
          Length = 1090

 Score = 69.7 bits (169), Expect = 9e-10
 Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 1/134 (0%)
 Frame = +1

Query: 289 SREMWRNVAKQAVCSRNLMRFSRNSVFQNKSRDFDSNKRLITGFYDVGLRGNGEQSSREE 468
           S  MWRNV+KQA   + L R   +   QN     +++     G+  V        S   E
Sbjct: 36  SSNMWRNVSKQAC--KGLFRSRISPPSQNLIFTVNTDILCHLGYSSVA---EAVSSRDAE 90

Query: 469 DNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAVSSTDTEEDVSSVDEIKGLLEEMCKDE 648
           ++G     CR    S  S+F    KGY+SVAEAVSSTD EE+++ VD+I+ LL+EM ++E
Sbjct: 91  EDGNFDGGCR---VSKNSSFRFDAKGYSSVAEAVSSTDAEEELAPVDKIQELLDEMKREE 147

Query: 649 -KKGFEFRQQRQTK 687
            +K  EFR + +TK
Sbjct: 148 MRKVAEFRLKNKTK 161


>ref|XP_006389213.1| hypothetical protein POPTR_0035s003301g, partial [Populus
           trichocarpa] gi|550311924|gb|ERP48127.1| hypothetical
           protein POPTR_0035s003301g, partial [Populus
           trichocarpa]
          Length = 147

 Score = 69.3 bits (168), Expect = 1e-09
 Identities = 55/139 (39%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
 Frame = +1

Query: 298 MWRNVAKQAVC-----SRNLMRFSRNSVFQNKSRD---FDSNK--RLITGFYDVGLRGNG 447
           MWRNVAKQA       S +   F R   F   SR+   F+  K   L      +G R   
Sbjct: 1   MWRNVAKQATLKTQSKSLDFPSFPRTYSFLGASREPIFFEKLKFHSLNNTSPRLGFRAID 60

Query: 448 EQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDVSSVDEIKG 621
           E S+ E+  G+ SF   R I  +N +      P+GY SVAEA+SSTD E++VS  DE++ 
Sbjct: 61  EISTHEDFMGKPSFVFLRNIDSTNGNRCGGFFPRGYVSVAEALSSTDVEDNVSGADEVQE 120

Query: 622 LLEEMCKDEKKGFEFRQQR 678
           L  EM K+E+K   FR++R
Sbjct: 121 LQPEMRKEEEKEEHFRRRR 139


>ref|XP_006384251.1| hypothetical protein POPTR_0004s11060g [Populus trichocarpa]
           gi|550340797|gb|ERP62048.1| hypothetical protein
           POPTR_0004s11060g [Populus trichocarpa]
          Length = 475

 Score = 67.0 bits (162), Expect = 6e-09
 Identities = 55/148 (37%), Positives = 79/148 (53%), Gaps = 17/148 (11%)
 Frame = +1

Query: 289 SREMWRNVAKQAVC-----SRNLMRFSRNSVFQNKSRD---FDSNKRLITGFYDVG---- 432
           S  MWRNVAKQA+      S N   F R   F    ++   F+ +K     F+ V     
Sbjct: 35  STVMWRNVAKQAILKPQSKSLNFPSFPRTHSFLGAPQEPIFFEKSK-----FHSVNNSSP 89

Query: 433 ---LRGNGEQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDV 597
               R  GE S+ E+  G+ SF   R    SN +  S   P+GY SVAEAVSSTD E++V
Sbjct: 90  QLCFRRIGEISTHEDYMGKPSFGFLRNGDSSNGNLCSGLCPRGYVSVAEAVSSTDVEDNV 149

Query: 598 SSVDEIKGLLEEMCKDEKKGFEFRQQRQ 681
              +E++ LL++  K+E+K  +FR++R+
Sbjct: 150 VVDEELQELLQDTRKEEEKEKDFRRRRR 177


>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
           chloroplastic/mitochondrial; AltName:
           Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
           single subunit RNA polymerase 2B; Flags: Precursor
           gi|21425665|emb|CAC95020.1| mitochondrial and
           chloroplast RNA polymerase [Nicotiana tabacum]
          Length = 1021

 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 56/146 (38%), Positives = 79/146 (54%), Gaps = 15/146 (10%)
 Frame = +1

Query: 298 MWRNVAKQA---------VCSRN----LMRFSRNSVFQNKSRDFDSNKRLITGFYDVGLR 438
           MWRN+ KQ            S+N     + F ++SVF++ ++ F S   +      +G +
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTK-FRSLIPISCSNIVMGFQ 93

Query: 439 GNGEQSSREEDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAV--SSTDTEEDVSSVDE 612
             GE    +E   R   +  Q+   N + F  R K YASVAEAV  SSTD EEDVS VDE
Sbjct: 94  NLGEYLPGDEFLSRPLLK-NQV---NSNDFCCR-KSYASVAEAVAVSSTDAEEDVSVVDE 148

Query: 613 IKGLLEEMCKDEKKGFEFRQQRQTKL 690
           ++ LL E+ K+EKK F FR+++Q  L
Sbjct: 149 VQELLTELKKEEKKQFAFRRRKQRML 174


>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
           sylvestris] gi|17221595|dbj|BAB78465.1| T7
           bacteriophage-type single subunit RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 22/153 (14%)
 Frame = +1

Query: 298 MWRNVAKQA---------VCSRN----LMRFSRNSVFQNKSRDFD----SNKRLITGFYD 426
           MWRN+ KQ            S+N     + F ++S+F++ ++       S   ++ GF +
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 427 VGLRGNGEQSSRE---EDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAV--SSTDTEE 591
           +G    G++       ++   ++F CR              K YASVAEAV  SSTD EE
Sbjct: 95  LGEYLPGDEFLSRPLIKNQVNNNFCCR--------------KSYASVAEAVAVSSTDAEE 140

Query: 592 DVSSVDEIKGLLEEMCKDEKKGFEFRQQRQTKL 690
           DVS VDE+  LL E+ K+EKK F FR+++Q  L
Sbjct: 141 DVSVVDEVHELLTELKKEEKKQFAFRRRKQRML 173


>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
           AltName: Full=T7 bacteriophage-type single subunit RNA
           polymerase 2; Flags: Precursor
           gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
           [Nicotiana sylvestris]
          Length = 1020

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 22/153 (14%)
 Frame = +1

Query: 298 MWRNVAKQA---------VCSRN----LMRFSRNSVFQNKSRDFD----SNKRLITGFYD 426
           MWRN+ KQ            S+N     + F ++S+F++ ++       S   ++ GF +
Sbjct: 35  MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94

Query: 427 VGLRGNGEQSSRE---EDNGRSSFRCRQIPCSNVSAFSDRPKGYASVAEAV--SSTDTEE 591
           +G    G++       ++   ++F CR              K YASVAEAV  SSTD EE
Sbjct: 95  LGEYLPGDEFLSRPLIKNQVNNNFCCR--------------KSYASVAEAVAVSSTDAEE 140

Query: 592 DVSSVDEIKGLLEEMCKDEKKGFEFRQQRQTKL 690
           DVS VDE+  LL E+ K+EKK F FR+++Q  L
Sbjct: 141 DVSVVDEVHELLTELKKEEKKQFAFRRRKQRML 173


>ref|XP_006373532.1| hypothetical protein POPTR_0017s14590g [Populus trichocarpa]
           gi|550320354|gb|ERP51329.1| hypothetical protein
           POPTR_0017s14590g [Populus trichocarpa]
          Length = 987

 Score = 64.3 bits (155), Expect = 4e-08
 Identities = 52/138 (37%), Positives = 71/138 (51%), Gaps = 12/138 (8%)
 Frame = +1

Query: 298 MWRNVAKQAVC-----SRNLMRFSRNSVFQNKSRD---FDSNK--RLITGFYDVGLRGNG 447
           MWRNVAKQA       S N   F R   F   S++   F+  K   L      +  R  G
Sbjct: 1   MWRNVAKQATLKSQSKSLNFPSFPRTYSFLGASKEPIFFEKLKFHSLNNTSPRLSFRAIG 60

Query: 448 EQSSREEDNGRSSFR-CRQIPCSNVSAFSDR-PKGYASVAEAVSSTDTEEDVSSVDEIKG 621
           E S+ E+  G+  F   R    +N +  +   P+GY SV EAVSSTD E++V   DE++ 
Sbjct: 61  EISTHEDFMGKPRFIFLRNSDSTNGNRCAGFCPRGYVSVVEAVSSTDVEDNVYGADEVQE 120

Query: 622 LLEEMCKDEKKGFEFRQQ 675
           LL EM K+E+K   FR++
Sbjct: 121 LLPEMRKEEEKEEHFRRR 138


>ref|XP_004491957.1| PREDICTED: DNA-directed RNA polymerase 2,
           chloroplastic/mitochondrial-like isoform X1 [Cicer
           arietinum]
          Length = 1126

 Score = 62.8 bits (151), Expect = 1e-07
 Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 32/165 (19%)
 Frame = +1

Query: 289 SREMWRNVAKQAVCSRNLMRFS---RNSVF------------QNKSRDFDSNK-RLITGF 420
           S  MWRNV+KQA       R S   +N +F            QN++     ++ +L+  F
Sbjct: 36  SSNMWRNVSKQACKGLFRSRISPPSQNLIFTVNTDILCHLGKQNRTGHVQKSRFQLVENF 95

Query: 421 YDVGLRGNGE--------------QSSRE-EDNGRSSFRCRQIPCSNVSAFSDRPKGYAS 555
                  N                 SSR+ E++G     CR    S  S+F    KGY+S
Sbjct: 96  GGCCCSNNSPFLFDAKGYSSVAEAVSSRDAEEDGNFDGGCR---VSKNSSFRFDAKGYSS 152

Query: 556 VAEAVSSTDTEEDVSSVDEIKGLLEEMCKDE-KKGFEFRQQRQTK 687
           VAEAVSSTD EE+++ VD+I+ LL+EM ++E +K  EFR + +TK
Sbjct: 153 VAEAVSSTDAEEELAPVDKIQELLDEMKREEMRKVAEFRLKNKTK 197