BLASTX nr result
ID: Cocculus23_contig00036803
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00036803
(412 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002298671.2| pentatricopeptide repeat-containing family p... 64 2e-08
emb|CBI25024.3| unnamed protein product [Vitis vinifera] 60 3e-07
ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containi... 60 3e-07
gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonic... 60 3e-07
ref|XP_006492529.1| PREDICTED: pentatricopeptide repeat-containi... 60 4e-07
ref|XP_006492528.1| PREDICTED: pentatricopeptide repeat-containi... 60 4e-07
ref|XP_004984117.1| PREDICTED: pentatricopeptide repeat-containi... 60 4e-07
gb|EMT02491.1| hypothetical protein F775_52486 [Aegilops tauschii] 60 4e-07
ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containi... 60 4e-07
gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indi... 60 4e-07
ref|XP_007150084.1| hypothetical protein PHAVU_005G125200g [Phas... 59 5e-07
ref|XP_006663835.1| PREDICTED: pentatricopeptide repeat-containi... 59 7e-07
ref|XP_006651472.1| PREDICTED: pentatricopeptide repeat-containi... 59 7e-07
gb|EMT03352.1| hypothetical protein F775_15521 [Aegilops tauschii] 59 7e-07
ref|XP_004296063.1| PREDICTED: pentatricopeptide repeat-containi... 59 7e-07
gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Ja... 59 7e-07
ref|XP_006605886.1| PREDICTED: pentatricopeptide repeat-containi... 59 7e-07
ref|XP_002520950.1| pentatricopeptide repeat-containing protein,... 59 7e-07
gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonic... 59 7e-07
ref|XP_006421034.1| hypothetical protein CICLE_v10004567mg [Citr... 59 9e-07
>ref|XP_002298671.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550348740|gb|EEE83476.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 634
Score = 64.3 bits (155), Expect = 2e-08
Identities = 26/35 (74%), Positives = 29/35 (82%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
FL L SI H+EIIVRD+TR+HHFKDGRCSC FW
Sbjct: 600 FLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 634
>emb|CBI25024.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 60.1 bits (144), Expect = 3e-07
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F+ L SIT REIIVRD+ RFHHFK+G CSCG FW
Sbjct: 587 FMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 621
>ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Vitis vinifera]
Length = 594
Score = 60.1 bits (144), Expect = 3e-07
Identities = 25/35 (71%), Positives = 28/35 (80%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F+ L SIT REIIVRD+ RFHHFK+G CSCG FW
Sbjct: 560 FMKLASSITEREIIVRDTNRFHHFKNGYCSCGEFW 594
>gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586055|gb|EAZ26719.1| hypothetical protein
OsJ_10627 [Oryza sativa Japonica Group]
Length = 798
Score = 60.1 bits (144), Expect = 3e-07
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = -2
Query: 408 LTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW--*CSNPFFQEQNGNETEVTVWHASL 235
+ L+ IT REII+RD+ RFHHFKDG CSC +W PF +E + +W S+
Sbjct: 673 IKLIAKITSREIILRDANRFHHFKDGFCSCRDYWIQVSKRPFDREVHHPLQANCIW--SI 730
Query: 234 TLLRLFFSIFFIWSSVKEKAKATC 163
L R ++WS V + +K++C
Sbjct: 731 VLSR-----SWVWSGVVKLSKSSC 749
>ref|XP_006492529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like isoform X2 [Citrus sinensis]
Length = 610
Score = 59.7 bits (143), Expect = 4e-07
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = -2
Query: 408 LTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
+ ++ SIT REI+VRD+TR+HHFKDG+CSC FW
Sbjct: 577 MKMISSITKREIVVRDATRYHHFKDGKCSCNDFW 610
>ref|XP_006492528.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
mitochondrial-like isoform X1 [Citrus sinensis]
Length = 623
Score = 59.7 bits (143), Expect = 4e-07
Identities = 22/34 (64%), Positives = 29/34 (85%)
Frame = -2
Query: 408 LTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
+ ++ SIT REI+VRD+TR+HHFKDG+CSC FW
Sbjct: 577 MKMISSITKREIVVRDATRYHHFKDGKCSCNDFW 610
>ref|XP_004984117.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Setaria italica]
Length = 774
Score = 59.7 bits (143), Expect = 4e-07
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -2
Query: 399 VGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
+ IT REIIVRDS RFHHFKDG CSCG FW
Sbjct: 744 ISKITEREIIVRDSNRFHHFKDGHCSCGDFW 774
>gb|EMT02491.1| hypothetical protein F775_52486 [Aegilops tauschii]
Length = 1090
Score = 59.7 bits (143), Expect = 4e-07
Identities = 28/78 (35%), Positives = 44/78 (56%)
Frame = -2
Query: 408 LTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW*CSNPFFQEQNGNETEVTVWHASLTL 229
+ ++ I +R+IIVRDS+RFHHFKDG CSCG +W + ++ ++ W S
Sbjct: 833 IKMMSKIVNRDIIVRDSSRFHHFKDGVCSCGDYWMHTEHADKQLRIVRAHLSGWSDSA-- 890
Query: 228 LRLFFSIFFIWSSVKEKA 175
+FF+WS+ K +
Sbjct: 891 ----IDVFFLWSTKKNSS 904
>ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Brachypodium distachyon]
Length = 747
Score = 59.7 bits (143), Expect = 4e-07
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -2
Query: 399 VGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
+ IT REIIVRDS RFHHFKDG CSCG FW
Sbjct: 717 ISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747
>gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
Length = 798
Score = 59.7 bits (143), Expect = 4e-07
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = -2
Query: 408 LTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW--*CSNPFFQEQNGNETEVTVWHASL 235
+ L+ IT REI++RD+ RFHHFKDG CSC +W PF +E + +W S+
Sbjct: 673 IKLIAKITSREIVLRDANRFHHFKDGFCSCRDYWIQVSKRPFDREVHHPLQANCIW--SI 730
Query: 234 TLLRLFFSIFFIWSSVKEKAKATC 163
L R ++WS V + +K++C
Sbjct: 731 VLSR-----SWVWSGVVKLSKSSC 749
>ref|XP_007150084.1| hypothetical protein PHAVU_005G125200g [Phaseolus vulgaris]
gi|561023348|gb|ESW22078.1| hypothetical protein
PHAVU_005G125200g [Phaseolus vulgaris]
Length = 876
Score = 59.3 bits (142), Expect = 5e-07
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F+ LV I HR I+VRDS RFHHFKDG CSCG +W
Sbjct: 842 FIKLVSLIEHRYIVVRDSNRFHHFKDGLCSCGDYW 876
>ref|XP_006663835.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Oryza brachyantha]
Length = 630
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F+ +V IT R+IIVRD RFHHFKDG CSCG FW
Sbjct: 596 FMKIVSCITERKIIVRDINRFHHFKDGSCSCGDFW 630
>ref|XP_006651472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Oryza brachyantha]
Length = 749
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -2
Query: 399 VGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
+ IT REIIVRDS RFHHFKDG CSCG FW
Sbjct: 719 ISKITEREIIVRDSNRFHHFKDGYCSCGDFW 749
>gb|EMT03352.1| hypothetical protein F775_15521 [Aegilops tauschii]
Length = 446
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F+ L I EIIVRD+ RFHHFKDG CSCGGFW
Sbjct: 412 FMRLASRIEQAEIIVRDNMRFHHFKDGECSCGGFW 446
>ref|XP_004296063.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Fragaria vesca subsp. vesca]
Length = 867
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/32 (75%), Positives = 26/32 (81%)
Frame = -2
Query: 402 LVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
L+ IT REIIVRDS RFHHFKDG CSCG +W
Sbjct: 836 LISVITEREIIVRDSNRFHHFKDGTCSCGDYW 867
>gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
gi|125535837|gb|EAY82325.1| hypothetical protein
OsI_37535 [Oryza sativa Indica Group]
gi|125578563|gb|EAZ19709.1| hypothetical protein
OsJ_35285 [Oryza sativa Japonica Group]
Length = 630
Score = 58.9 bits (141), Expect = 7e-07
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F+ +V IT R++IVRD RFHHFKDG CSCG FW
Sbjct: 596 FMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630
>ref|XP_006605886.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 58.9 bits (141), Expect = 7e-07
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F+ LV T REIIVRD+ RFHHFKDG CSCG FW
Sbjct: 584 FMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618
>ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539787|gb|EEF41367.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 835
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = -2
Query: 411 FLTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
F TLV RE+IVRD++RFHHFKDG CSCG FW
Sbjct: 801 FCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835
>gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125586550|gb|EAZ27214.1| hypothetical protein
OsJ_11153 [Oryza sativa Japonica Group]
Length = 748
Score = 58.9 bits (141), Expect = 7e-07
Identities = 24/31 (77%), Positives = 25/31 (80%)
Frame = -2
Query: 399 VGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
+ IT REIIVRDS RFHHFKDG CSCG FW
Sbjct: 718 ISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748
>ref|XP_006421034.1| hypothetical protein CICLE_v10004567mg [Citrus clementina]
gi|557522907|gb|ESR34274.1| hypothetical protein
CICLE_v10004567mg [Citrus clementina]
Length = 610
Score = 58.5 bits (140), Expect = 9e-07
Identities = 21/34 (61%), Positives = 29/34 (85%)
Frame = -2
Query: 408 LTLVGSITHREIIVRDSTRFHHFKDGRCSCGGFW 307
+ ++ +IT REI+VRD+TR+HHFKDG+CSC FW
Sbjct: 577 MKMISNITKREIVVRDATRYHHFKDGKCSCNDFW 610