BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00036709
         (770 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   341   1e-91
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              332   9e-89
ref|XP_007023655.1| Pseudouridine synthase family protein [Theob...   318   1e-84
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun...   318   2e-84
gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus...   315   9e-84
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]           314   2e-83
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]           312   7e-83
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   312   1e-82
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   310   4e-82
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   308   1e-81
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   307   2e-81
ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   306   5e-81
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   306   5e-81
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   305   9e-81
ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phas...   305   2e-80
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   305   2e-80
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   305   2e-80
ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mit...   303   6e-80
gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial...   297   3e-78
ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   294   2e-77

>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
           vinifera]
          Length = 479

 Score =  341 bits (875), Expect = 1e-91
 Identities = 178/255 (69%), Positives = 208/255 (81%), Gaps = 8/255 (3%)
 Frame = -3

Query: 741 LSTTIRNFSRGS----AEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNP---L 583
           L   +R++SR +    A A  VIRVSNN+A+LGSPKEGPKPRQLLSLPPFPA P P   L
Sbjct: 12  LFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSL 71

Query: 582 LAKDSAPVRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSD-PKFLLGDEKKLPPLRK 406
           +     P  VTA+SW+KYYF +IP SV+QSHFNKGLV ME S+     L  E ++ PLRK
Sbjct: 72  VNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRK 131

Query: 405 ISPNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVL 226
           I PN VMEAG++IYVPVS+AE+RISKRFDTIPSG+L+PNADEIEYL RLV YKD AILVL
Sbjct: 132 IKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVL 191

Query: 225 NKPPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQL 46
           NKPPK+P+KGNLPVHNSMDALAAAAL++  ++GPKLVHRLDRESSGLLLMGR+KES+A L
Sbjct: 192 NKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHL 251

Query: 45  QWLFSDTSKAKTSSK 1
            WLFSD +KAK+ SK
Sbjct: 252 HWLFSDINKAKSLSK 266


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  332 bits (851), Expect = 9e-89
 Identities = 175/257 (68%), Positives = 208/257 (80%), Gaps = 10/257 (3%)
 Frame = -3

Query: 741 LSTTIRNFSRGS----AEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNP---L 583
           L   +R++SR +    A A  VIRVSNN+A+LGSPKEGPKPRQLLSLPPFPA P P   L
Sbjct: 12  LFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSL 71

Query: 582 LAKDSAPVRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSD-PKFLLGDEKKLPPLRK 406
           +     P  VTA+SW+KYYF +IP SV+QSHFNKGLV ME S+     L  E ++ PLRK
Sbjct: 72  VNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRK 131

Query: 405 ISPNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRL--VMYKDSAIL 232
           I PN VMEAG++IYVPVS+AE+RISKRFDTIPSG+L+PNADEIEYL RL  + ++D AIL
Sbjct: 132 IKPNEVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAIL 191

Query: 231 VLNKPPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIA 52
           VLNKPPK+P+KGNLPVHNSMDALAAAAL++  ++GPKLVHRLDRESSGLLLMGR+KES+A
Sbjct: 192 VLNKPPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVA 251

Query: 51  QLQWLFSDTSKAKTSSK 1
            L WLFSD +KAK+ SK
Sbjct: 252 HLHWLFSDINKAKSLSK 268


>ref|XP_007023655.1| Pseudouridine synthase family protein [Theobroma cacao]
           gi|508779021|gb|EOY26277.1| Pseudouridine synthase
           family protein [Theobroma cacao]
          Length = 471

 Score =  318 bits (816), Expect = 1e-84
 Identities = 167/248 (67%), Positives = 196/248 (79%), Gaps = 5/248 (2%)
 Frame = -3

Query: 729 IRNFSRGS----AEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAP 562
           +R++SR +    A A  V+RVSN++A LG+PK+GPKPRQLLSLPPFP  P P        
Sbjct: 14  VRHYSRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFPGYPLPG-KNPGGT 72

Query: 561 VRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDP-KFLLGDEKKLPPLRKISPNVVM 385
            RVTA+SWLKYYF +IP S IQSHFNKGLVQME S+     +  +  + PLRKI  N VM
Sbjct: 73  ARVTAISWLKYYFDEIPDSAIQSHFNKGLVQMESSNAGDTCIERDGLMKPLRKIKHNEVM 132

Query: 384 EAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLP 205
           E G++++VPVSIAE+RISKRFD IPSG+LYPN DEI+YL RLV YKD AILVLNKPPKLP
Sbjct: 133 EVGTRVWVPVSIAETRISKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYAILVLNKPPKLP 192

Query: 204 VKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDT 25
           VKG+LPVHNSMDALAAAALSY  D+GPKLVHRLDRESSGLLLMGR+KES+A L WLF+D 
Sbjct: 193 VKGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFNDL 252

Query: 24  SKAKTSSK 1
           +  K+S K
Sbjct: 253 NTVKSSCK 260


>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
           gi|462405724|gb|EMJ11188.1| hypothetical protein
           PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  318 bits (814), Expect = 2e-84
 Identities = 161/233 (69%), Positives = 189/233 (81%), Gaps = 2/233 (0%)
 Frame = -3

Query: 699 AGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAPV--RVTAVSWLKYY 526
           AG +IRVSN++ARLG PKEGPKPRQLLSLPPFP  P P        V  RVTAVSW+KYY
Sbjct: 29  AGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHPLPGKRSHEGGVVSRVTAVSWVKYY 88

Query: 525 FADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKLPPLRKISPNVVMEAGSKIYVPVSIA 346
           F  I  S IQSHF +GLVQMEC     ++  E ++ P+RKI P+ VME G+++YVPVS+ 
Sbjct: 89  FDGIYDSTIQSHFKQGLVQMECPG---MIEKEGQMKPMRKIRPSEVMEVGARVYVPVSVV 145

Query: 345 ESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMDA 166
           ESR+S+RFD IPSG+LYPNADEIEY+ R V YKDSAI+VLNKPPKLPVKGNLPVHNSMDA
Sbjct: 146 ESRVSRRFDCIPSGTLYPNADEIEYMQRRVKYKDSAIIVLNKPPKLPVKGNLPVHNSMDA 205

Query: 165 LAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTSKAKTS 7
           LAAAALSYG + GPKLVHRLDRESSGL LMGR+KES++ LQWL++D +K K+S
Sbjct: 206 LAAAALSYGNNKGPKLVHRLDRESSGLHLMGRTKESVSLLQWLYTDFNKGKSS 258


>gb|EYU34909.1| hypothetical protein MIMGU_mgv1a006040mg [Mimulus guttatus]
          Length = 460

 Score =  315 bits (808), Expect = 9e-84
 Identities = 165/237 (69%), Positives = 190/237 (80%), Gaps = 2/237 (0%)
 Frame = -3

Query: 705 AEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAPVR-VTAVSWLKY 529
           A A  V+RVSNNIA LG+PKEGPKPRQLLSLPPFP   NPL  ++S  V  VTA+SWLKY
Sbjct: 13  ASAKAVLRVSNNIAHLGAPKEGPKPRQLLSLPPFPG--NPLPGRNSTSVEHVTAISWLKY 70

Query: 528 YFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEK-KLPPLRKISPNVVMEAGSKIYVPVS 352
           YF D+   VIQ HFNKGLV+MEC +   L    + +    RKI P+ ++E G ++YVPVS
Sbjct: 71  YFDDVIPPVIQHHFNKGLVRMECLNSSGLSESYRGQTMSTRKIKPSEIVEEGDRVYVPVS 130

Query: 351 IAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPVKGNLPVHNSM 172
           +AE+++SKRFD IPSG+L+PNADEI YL RLV YKDSAILVLNKPPKLPVKGNLPVHNSM
Sbjct: 131 VAENKVSKRFDVIPSGTLHPNADEIMYLQRLVKYKDSAILVLNKPPKLPVKGNLPVHNSM 190

Query: 171 DALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTSKAKTSSK 1
           DALAAAALSY  D+GPKLVHRLDRESSGLLLMGR+KESI+ L WLFSD  KA + SK
Sbjct: 191 DALAAAALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLFSDVRKAASFSK 247


>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  314 bits (805), Expect = 2e-83
 Identities = 169/241 (70%), Positives = 196/241 (81%), Gaps = 7/241 (2%)
 Frame = -3

Query: 729 IRNFSR----GSAEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAP 562
           IR +SR     +AEAG VIRVSNN+A+LG PKEGPKPRQLLSLPPFP  P P   K+S  
Sbjct: 6   IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLP--GKNSE- 62

Query: 561 VRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECS---DPKFLLGDEKKLPPLRKISPNV 391
            RVTA+SW+KYYF ++  +VIQSHFNK LVQMECS   DP  L   ++K+ P+RKI PN 
Sbjct: 63  -RVTAISWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDP--LAERDRKMKPMRKIKPNE 119

Query: 390 VMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPK 211
           VM  G++IYVPVS+AESRISKRFD IPSG+L+PNADEI YL RL    DSAILVLNKPP+
Sbjct: 120 VMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVLNKPPR 175

Query: 210 LPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFS 31
           LPVKG+LPVHNSMDALAAAALSY   +GPKLVHRLDR+SSGLLLMGR+KESI+ L+WLFS
Sbjct: 176 LPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHLEWLFS 235

Query: 30  D 28
           +
Sbjct: 236 N 236


>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
          Length = 449

 Score =  312 bits (800), Expect = 7e-83
 Identities = 168/241 (69%), Positives = 195/241 (80%), Gaps = 7/241 (2%)
 Frame = -3

Query: 729 IRNFSR----GSAEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAP 562
           IR +SR     +AEAG VIRVSNN+A+LG PKEGPKPRQLLSLPPFP  P P   K S  
Sbjct: 6   IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLP--GKKSE- 62

Query: 561 VRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECS---DPKFLLGDEKKLPPLRKISPNV 391
            RVTA++W+KYYF ++  +VIQSHFNK LVQMECS   DP  L   ++K+ P+RKI PN 
Sbjct: 63  -RVTAITWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDP--LAERDRKMKPMRKIKPNE 119

Query: 390 VMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPK 211
           VM  G++IYVPVS+AESRISKRFD IPSG+L+PNADEI YL RL    DSAILVLNKPP+
Sbjct: 120 VMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVLNKPPR 175

Query: 210 LPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFS 31
           LPVKG+LPVHNSMDALAAAALSY   +GPKLVHRLDR+SSGLLLMGR+KESI+ L+WLFS
Sbjct: 176 LPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHLEWLFS 235

Query: 30  D 28
           +
Sbjct: 236 N 236


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
           gi|550341843|gb|ERP62872.1| hypothetical protein
           POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  312 bits (799), Expect = 1e-82
 Identities = 165/245 (67%), Positives = 196/245 (80%), Gaps = 1/245 (0%)
 Frame = -3

Query: 741 LSTTIRNFSRGSAEAGHVIRVS-NNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSA 565
           +S+ +R +SR    A  V+RV+  N+A+LGSPKEGPKPRQLLSLPPFP  P P   K   
Sbjct: 8   VSSGVRLYSR---VAPQVVRVTAKNVAKLGSPKEGPKPRQLLSLPPFPGFPLPG-KKSLN 63

Query: 564 PVRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKLPPLRKISPNVVM 385
              VTA+SW+KYYF +I  SVIQSHFNK LVQ+EC      +  E    P+RKI P+ VM
Sbjct: 64  ACHVTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPSSSDSVEMEGLGKPMRKIKPSDVM 123

Query: 384 EAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLP 205
           E G++I++PVS+AE+ ISKRFDTIPSG+LYPNADEIEYL RLV YKDSA+LVLNKPPK+P
Sbjct: 124 EVGARIHIPVSVAETAISKRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVP 183

Query: 204 VKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDT 25
           VKGN+P+HNSMDALAAAALSYG D+GPKLVHRLDRESSGLLLMGR+KESIA LQ LFS  
Sbjct: 184 VKGNMPIHNSMDALAAAALSYGYDEGPKLVHRLDRESSGLLLMGRTKESIAHLQLLFSYI 243

Query: 24  SKAKT 10
           +KA++
Sbjct: 244 NKAQS 248


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 468

 Score =  310 bits (794), Expect = 4e-82
 Identities = 160/235 (68%), Positives = 189/235 (80%)
 Frame = -3

Query: 705 AEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAPVRVTAVSWLKYY 526
           A A  VIRVSNN+A LGSPK+GPKPRQLLSLPPFP  P P   ++S    VTA+SW+KYY
Sbjct: 26  AYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGLPLP--GRNSMASHVTAISWVKYY 83

Query: 525 FADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKLPPLRKISPNVVMEAGSKIYVPVSIA 346
           F +I  S IQSHFNKGL  +EC +    +    ++  LRKI  N +MEAG++++V VS+A
Sbjct: 84  FDEILDSAIQSHFNKGLAHIECPNGSGSIEYGGQMS-LRKIKHNDIMEAGARVHVAVSVA 142

Query: 345 ESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMDA 166
           E+RISKRFDTIPSG+LYPNADEI+YL RLV YKDSAI+VLNKPP+LPVKGNLP+HNSMDA
Sbjct: 143 ETRISKRFDTIPSGTLYPNADEIQYLQRLVKYKDSAIIVLNKPPRLPVKGNLPLHNSMDA 202

Query: 165 LAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTSKAKTSSK 1
           LAAAALSY  D+GPKLV RLDRESSGLLLMGR+KESI  LQWLFSD +K+ +  K
Sbjct: 203 LAAAALSYDYDEGPKLVQRLDRESSGLLLMGRTKESIDHLQWLFSDVNKSNSRCK 257


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Glycine max]
          Length = 476

 Score =  308 bits (789), Expect = 1e-81
 Identities = 157/233 (67%), Positives = 190/233 (81%), Gaps = 3/233 (1%)
 Frame = -3

Query: 690 VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAPVR---VTAVSWLKYYFA 520
           VI VSNNIARL +PKEGPKPRQLLSLPPFP  P P  +  S   +   VTAV+W+KYYF 
Sbjct: 35  VISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSRQRDYVTAVNWIKYYFK 94

Query: 519 DIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKLPPLRKISPNVVMEAGSKIYVPVSIAES 340
               SVI+SHF +GLVQME  D       E+++ P+RKI PN VM+ G++++VPVSI E+
Sbjct: 95  GTWGSVIESHFREGLVQMEADDSS--TQKEEQMKPMRKIRPNEVMKRGARVHVPVSICET 152

Query: 339 RISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMDALA 160
           RISKR+D IPSG+LYPNADEI+YL RLV+YKDSAI+VLNKPPKLPVKG+LPVHNSMDALA
Sbjct: 153 RISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALA 212

Query: 159 AAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTSKAKTSSK 1
           AAALSY  D+GPKLVHRLDRESSG+LL+GR+K+S++ LQWLFS+ + AK+S K
Sbjct: 213 AAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNAKSSCK 265


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
           sinensis]
          Length = 471

 Score =  307 bits (787), Expect = 2e-81
 Identities = 161/247 (65%), Positives = 195/247 (78%), Gaps = 2/247 (0%)
 Frame = -3

Query: 735 TTIRNFSRGSAEAGHVIRVSNN-IARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKD-SAP 562
           ++IR++SR S     VIRVS   +A LG PK GPKPRQLLSLPPFP    P   K     
Sbjct: 13  SSIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLP--GKHWGRQ 70

Query: 561 VRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKLPPLRKISPNVVME 382
             VTAVSW+KYYF ++  SVIQSHFNKGLVQMEC++      ++ ++ P+RKI  N VME
Sbjct: 71  GHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVME 130

Query: 381 AGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPV 202
            G++I++PVS+ E RISKR+DTIPSG+L PNADEI+YL RLV Y+DSAILVLNKPPK+P+
Sbjct: 131 PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL 190

Query: 201 KGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTS 22
           KGNLPVHNSMDALAAAALSY  ++GPKLVHRLDRESSGLLLMGR+KES++ L WLFSD +
Sbjct: 191 KGNLPVHNSMDALAAAALSYDNNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVN 250

Query: 21  KAKTSSK 1
           K+K+ SK
Sbjct: 251 KSKSLSK 257


>ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X2 [Cicer arietinum]
          Length = 360

 Score =  306 bits (784), Expect = 5e-81
 Identities = 163/255 (63%), Positives = 197/255 (77%), Gaps = 8/255 (3%)
 Frame = -3

Query: 741 LSTTIRNFSR----GSAEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAK 574
           LS+ +R++SR           VIRVSNNIARL  PKEGPKPRQLLSLPPFP  P P    
Sbjct: 14  LSSIVRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNS 73

Query: 573 DSAPVR---VTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKL-PPLRK 406
            SAP +   VTAV+W+KYYF     SVI+SHF +GLVQME          +K+L  P+RK
Sbjct: 74  TSAPGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRK 133

Query: 405 ISPNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVL 226
           I PN VM+ G++++V VS+AE++ISKRFD IPSG+L PNADEI+YL RLV+YKDSAI++L
Sbjct: 134 IRPNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIML 193

Query: 225 NKPPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQL 46
           NKPPKLPVKGNLPVHNSMDALAAAALSY  DDGPKLVHRLDRESSG+LL+GR+K+S++ L
Sbjct: 194 NKPPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHL 253

Query: 45  QWLFSDTSKAKTSSK 1
           QWLFS+ +  K+S K
Sbjct: 254 QWLFSNINNTKSSCK 268


>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
           X1 [Cicer arietinum]
          Length = 479

 Score =  306 bits (784), Expect = 5e-81
 Identities = 163/255 (63%), Positives = 197/255 (77%), Gaps = 8/255 (3%)
 Frame = -3

Query: 741 LSTTIRNFSR----GSAEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAK 574
           LS+ +R++SR           VIRVSNNIARL  PKEGPKPRQLLSLPPFP  P P    
Sbjct: 14  LSSIVRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKNS 73

Query: 573 DSAPVR---VTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKL-PPLRK 406
            SAP +   VTAV+W+KYYF     SVI+SHF +GLVQME          +K+L  P+RK
Sbjct: 74  TSAPGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMRK 133

Query: 405 ISPNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVL 226
           I PN VM+ G++++V VS+AE++ISKRFD IPSG+L PNADEI+YL RLV+YKDSAI++L
Sbjct: 134 IRPNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIML 193

Query: 225 NKPPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQL 46
           NKPPKLPVKGNLPVHNSMDALAAAALSY  DDGPKLVHRLDRESSG+LL+GR+K+S++ L
Sbjct: 194 NKPPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSHL 253

Query: 45  QWLFSDTSKAKTSSK 1
           QWLFS+ +  K+S K
Sbjct: 254 QWLFSNINNTKSSCK 268


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
           gi|557538602|gb|ESR49646.1| hypothetical protein
           CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  305 bits (782), Expect = 9e-81
 Identities = 160/247 (64%), Positives = 195/247 (78%), Gaps = 2/247 (0%)
 Frame = -3

Query: 735 TTIRNFSRGSAEAGHVIRVSNN-IARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKD-SAP 562
           ++IR++SR S     VIRVS   +A LG PK GPKPRQLLSLPPFP    P   K     
Sbjct: 13  SSIRHYSRISPPRPAVIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLP--GKHWGRQ 70

Query: 561 VRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKLPPLRKISPNVVME 382
             VTAVSW+KYYF ++  SVIQSHFNKGLVQMEC++      ++ ++ P+RKI  N VME
Sbjct: 71  CHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVME 130

Query: 381 AGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPV 202
            G++I++PVS+ E RISKR+DTIPSG+L PNADEI+YL RLV Y+DSAILVLNKPPK+P+
Sbjct: 131 PGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPL 190

Query: 201 KGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTS 22
           KG+LPVHNSMDALAAAALSY  ++GPKLVHRLDRESSGLLLMGR+KES++ L WLFSD +
Sbjct: 191 KGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVN 250

Query: 21  KAKTSSK 1
           K+K+ SK
Sbjct: 251 KSKSLSK 257


>ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
           gi|561034434|gb|ESW32964.1| hypothetical protein
           PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  305 bits (780), Expect = 2e-80
 Identities = 155/234 (66%), Positives = 188/234 (80%), Gaps = 4/234 (1%)
 Frame = -3

Query: 690 VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAPVR---VTAVSWLKYYFA 520
           VIRVSNN+ARL +PKEGPKPRQLLSLPPFP  P P  +  S P +   VTAV+W+KYYF 
Sbjct: 36  VIRVSNNVARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSTSDPGQRDYVTAVNWIKYYFK 95

Query: 519 DIPCSVIQSHFNKGLVQMECS-DPKFLLGDEKKLPPLRKISPNVVMEAGSKIYVPVSIAE 343
               SVI+SHF +GLVQME           E  + P+RKI PN VM+ G++++VPVSIAE
Sbjct: 96  GAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPMRKIRPNEVMKHGARVHVPVSIAE 155

Query: 342 SRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMDAL 163
           +R+SKR+D IP G+LYPNADEI+YL RLV+YKDSAI+VLNKPPKLPVKGNLPVHNSMDAL
Sbjct: 156 TRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDAL 215

Query: 162 AAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTSKAKTSSK 1
           AAAALSY  D+GPKLVHRLDRE+SG+LL+GR+K+S + LQWLF++ + AK+S K
Sbjct: 216 AAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLFTNINNAKSSCK 269


>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  305 bits (780), Expect = 2e-80
 Identities = 168/261 (64%), Positives = 196/261 (75%), Gaps = 8/261 (3%)
 Frame = -3

Query: 759 SMRIDKLSTTIRNFSRGS----AEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQP 592
           SMR   L  T R +SR S    A A  +IRVSNNIA+LGSPKEGPK RQLLSLPPFP  P
Sbjct: 4   SMRRHLLLAT-RCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYP 62

Query: 591 NP---LLAKDSAPVRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEK-K 424
            P    +        VTA+ W+KYYF +I  S IQSHF KGLVQ+EC  P+    DEK  
Sbjct: 63  LPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVEC--PQLGGLDEKGN 120

Query: 423 LPPLRKISPNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKD 244
           L P+RKI    +ME G++I++PVS+AE ++++RFDTIPSG+LYPNADEI+YL RLV YKD
Sbjct: 121 LKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKD 180

Query: 243 SAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSK 64
           SAI+VLNKPPKLPVKG LPVHNSMDALA AALSY  DDGPKLVHRLDRESSG+LLMGR+K
Sbjct: 181 SAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTK 240

Query: 63  ESIAQLQWLFSDTSKAKTSSK 1
           ES+  LQWLFS+   AK + K
Sbjct: 241 ESVDHLQWLFSNIRNAKFTCK 261


>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
           sativus]
          Length = 471

 Score =  305 bits (780), Expect = 2e-80
 Identities = 168/261 (64%), Positives = 196/261 (75%), Gaps = 8/261 (3%)
 Frame = -3

Query: 759 SMRIDKLSTTIRNFSRGS----AEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQP 592
           SMR   L  T R +SR S    A A  +IRVSNNIA+LGSPKEGPK RQLLSLPPFP  P
Sbjct: 4   SMRRHLLLAT-RCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYP 62

Query: 591 NP---LLAKDSAPVRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEK-K 424
            P    +        VTA+ W+KYYF +I  S IQSHF KGLVQ+EC  P+    DEK  
Sbjct: 63  LPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVEC--PQLGGLDEKGN 120

Query: 423 LPPLRKISPNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKD 244
           L P+RKI    +ME G++I++PVS+AE ++++RFDTIPSG+LYPNADEI+YL RLV YKD
Sbjct: 121 LKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKD 180

Query: 243 SAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSK 64
           SAI+VLNKPPKLPVKG LPVHNSMDALA AALSY  DDGPKLVHRLDRESSG+LLMGR+K
Sbjct: 181 SAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTK 240

Query: 63  ESIAQLQWLFSDTSKAKTSSK 1
           ES+  LQWLFS+   AK + K
Sbjct: 241 ESVDHLQWLFSNIRNAKFTCK 261


>ref|XP_006353749.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
           X1 [Solanum tuberosum] gi|565374397|ref|XP_006353750.1|
           PREDICTED: RNA pseudouridine synthase 3,
           mitochondrial-like isoform X2 [Solanum tuberosum]
           gi|565374399|ref|XP_006353751.1| PREDICTED: RNA
           pseudouridine synthase 3, mitochondrial-like isoform X3
           [Solanum tuberosum]
          Length = 475

 Score =  303 bits (775), Expect = 6e-80
 Identities = 163/253 (64%), Positives = 191/253 (75%), Gaps = 10/253 (3%)
 Frame = -3

Query: 729 IRNFSRG---SAEAGH---VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNP----LL 580
           +R FSR    SA+A H   VIRVSNNI  LG  KEG KP QLLSLPPFP  P P      
Sbjct: 15  VRRFSRSVGHSAQANHCEPVIRVSNNITHLGRQKEGAKPSQLLSLPPFPGHPLPGKKVAT 74

Query: 579 AKDSAPVRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEKKLPPLRKIS 400
             D     VTA+SW+KYYF +IP SVIQ+HFNKGLVQ+E ++       E +   LRKI 
Sbjct: 75  GPDQPSCHVTAISWIKYYFDEIPGSVIQTHFNKGLVQLEFNE--LFTSKEGQTRLLRKIK 132

Query: 399 PNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNK 220
            + VME G++I+VP+S+AE+RISKR+D IPSG+LYPNADEI YL RLV YKD AILVLNK
Sbjct: 133 HSEVMEVGARIHVPISVAETRISKRYDVIPSGTLYPNADEIAYLQRLVFYKDPAILVLNK 192

Query: 219 PPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQW 40
           PPKLP+KGNLPVHNSMDALAAAALSY  D+GP+LVHRLDRESSGL LMGR++ESI+ L  
Sbjct: 193 PPKLPLKGNLPVHNSMDALAAAALSYEYDEGPRLVHRLDRESSGLHLMGRTEESISHLHL 252

Query: 39  LFSDTSKAKTSSK 1
           LFS+T K+K+ SK
Sbjct: 253 LFSNTKKSKSLSK 265


>gb|EYU23584.1| hypothetical protein MIMGU_mgv1a026780mg, partial [Mimulus
           guttatus]
          Length = 452

 Score =  297 bits (760), Expect = 3e-78
 Identities = 159/232 (68%), Positives = 182/232 (78%), Gaps = 2/232 (0%)
 Frame = -3

Query: 690 VIRVSNNIARLGSPKEGPKPRQLLSLPPFPAQPNPLLAKDSAPVR-VTAVSWLKYYFADI 514
           V+RVSNNIA LG+PKEGPKP+QLLSLPPFP   NPL  + S  V  VTA+SWLKYYF D+
Sbjct: 14  VLRVSNNIAHLGAPKEGPKPKQLLSLPPFPG--NPLPGRHSTSVEHVTAISWLKYYFDDV 71

Query: 513 PCSVIQSHFNKGLVQMECSDPKFLLGDEK-KLPPLRKISPNVVMEAGSKIYVPVSIAESR 337
              VIQ HFNKGLV+MEC +   L      +    RKI P+ +ME G ++YVPVS+AE++
Sbjct: 72  IPPVIQHHFNKGLVRMECLNSSGLSESYTGQTMSTRKIKPSEIMEEGDRVYVPVSVAENK 131

Query: 336 ISKRFDTIPSGSLYPNADEIEYLLRLVMYKDSAILVLNKPPKLPVKGNLPVHNSMDALAA 157
           +SKRFD IPSG+L+PNADEI YL RL    DSAILVLNKPPKLPVKGNL VHNSMDALAA
Sbjct: 132 VSKRFDVIPSGTLHPNADEIMYLQRL----DSAILVLNKPPKLPVKGNLLVHNSMDALAA 187

Query: 156 AALSYGRDDGPKLVHRLDRESSGLLLMGRSKESIAQLQWLFSDTSKAKTSSK 1
           AALSY  D+GPKLVHRLDRESSGLLLMGR+KESI+ L WLFSD  KA + SK
Sbjct: 188 AALSYDYDEGPKLVHRLDRESSGLLLMGRTKESISYLHWLFSDVRKAASFSK 239


>ref|XP_004300876.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Fragaria
           vesca subsp. vesca]
          Length = 469

 Score =  294 bits (753), Expect = 2e-77
 Identities = 159/262 (60%), Positives = 195/262 (74%), Gaps = 9/262 (3%)
 Frame = -3

Query: 759 SMRIDKLSTTIRNFSR------GSAEAGHVIRVSNNIARLGSPKEGPKPRQLLSLPPFPA 598
           ++R+  +S + R +S        SA    +IRVSN++A+LG PK GPKPRQLLSLPPFPA
Sbjct: 5   TIRLCHVSLSTRQYSSTSPPPPASAAPPPLIRVSNHVAKLGPPKAGPKPRQLLSLPPFPA 64

Query: 597 Q---PNPLLAKDSAPVRVTAVSWLKYYFADIPCSVIQSHFNKGLVQMECSDPKFLLGDEK 427
               P      D A   VTAVSWL+YYF +I  + I+SHFNKGLVQMEC      +G   
Sbjct: 65  GRHLPGKKSYHDGAVSHVTAVSWLRYYFHEIDDAAIRSHFNKGLVQMECESS---IGKH- 120

Query: 426 KLPPLRKISPNVVMEAGSKIYVPVSIAESRISKRFDTIPSGSLYPNADEIEYLLRLVMYK 247
               +RKI P+ VME G+++YV VSIAES++S+RFD IPS +LYPNADEI+YL RLV YK
Sbjct: 121 ----MRKIRPSEVMEEGARVYVAVSIAESKVSRRFDCIPSETLYPNADEIDYLQRLVKYK 176

Query: 246 DSAILVLNKPPKLPVKGNLPVHNSMDALAAAALSYGRDDGPKLVHRLDRESSGLLLMGRS 67
           DSAI+VLNKPPKLPVKGN+PVHNSMDALAAAALSY  D+GPKLVHRLDRESSG+LLMGR+
Sbjct: 177 DSAIIVLNKPPKLPVKGNVPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLMGRT 236

Query: 66  KESIAQLQWLFSDTSKAKTSSK 1
           KES+  LQ L++D +  K+S +
Sbjct: 237 KESLYLLQSLYTDINVGKSSCR 258