BLASTX nr result
ID: Cocculus23_contig00036446
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00036446
(497 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-depe... 78 1e-12
gb|EXC06141.1| Pre-mRNA-splicing factor ATP-dependent RNA helica... 74 3e-11
ref|XP_004310060.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 68 1e-09
ref|XP_004148974.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 67 2e-09
ref|XP_006364743.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 67 3e-09
ref|XP_004249090.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 67 3e-09
gb|EYU42101.1| hypothetical protein MIMGU_mgv1a000307mg [Mimulus... 65 7e-09
ref|XP_006849874.1| hypothetical protein AMTR_s00022p00074370 [A... 63 5e-08
ref|XP_003547002.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 62 1e-07
ref|XP_006595050.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 61 1e-07
ref|NP_001059742.1| Os07g0508000 [Oryza sativa Japonica Group] g... 61 1e-07
ref|XP_003542053.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 61 1e-07
gb|EEE67241.1| hypothetical protein OsJ_24387 [Oryza sativa Japo... 61 1e-07
gb|EEC82118.1| hypothetical protein OsI_26143 [Oryza sativa Indi... 60 3e-07
ref|XP_003597474.1| Pre-mRNA-splicing factor ATP-dependent RNA h... 59 7e-07
ref|XP_004487236.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 58 1e-06
ref|XP_003563048.1| PREDICTED: pre-mRNA-splicing factor ATP-depe... 57 3e-06
gb|EMS52676.1| Pre-mRNA-splicing factor ATP-dependent RNA helica... 56 4e-06
ref|XP_002316148.2| hypothetical protein POPTR_0010s17940g [Popu... 56 6e-06
dbj|BAK00252.1| predicted protein [Hordeum vulgare subsp. vulgare] 56 6e-06
>ref|XP_002264955.2| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like [Vitis vinifera]
Length = 1289
Score = 78.2 bits (191), Expect = 1e-12
Identities = 43/67 (64%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR-KSKGEAV 363
+D+DQ VT EPD G GGL VP GKD RVVFRPP++KS+LGLDVLA+ KR SK +
Sbjct: 11 IDLDQATVTFEPDQGGGGGLHVP--GKD-RVVFRPPQRKSLLGLDVLADAKRGGSKADGA 67
Query: 364 FKVPRER 384
FKVPRE+
Sbjct: 68 FKVPREK 74
>gb|EXC06141.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase [Morus
notabilis]
Length = 1302
Score = 73.6 bits (179), Expect = 3e-11
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR-KSKGEAV 363
+D+D+T VTLE + GGL +P GKD RVVF+PPE+KSILGLDVLAN KR +SK +
Sbjct: 11 IDLDKTTVTLEAEKSSNGGLYLP--GKD-RVVFKPPERKSILGLDVLANAKRGESKVDGG 67
Query: 364 FKVPRERM 387
FKVPR+R+
Sbjct: 68 FKVPRDRV 75
>ref|XP_004310060.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like [Fragaria vesca subsp. vesca]
Length = 1307
Score = 68.2 bits (165), Expect = 1e-09
Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%)
Frame = +1
Query: 193 IDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR-KSKGEAVFK 369
+D+T TLEP+ GGL VP GKD RVV+RPPE+KS+LGLDVLA KR +SK E FK
Sbjct: 12 LDKTTATLEPEKSSGGGLFVP--GKD-RVVYRPPERKSLLGLDVLAIAKREESKAEGGFK 68
Query: 370 VPRERM 387
P++R+
Sbjct: 69 APKDRV 74
>ref|XP_004148974.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like [Cucumis sativus]
Length = 1298
Score = 67.4 bits (163), Expect = 2e-09
Identities = 37/69 (53%), Positives = 49/69 (71%)
Frame = +1
Query: 175 GFD*MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKG 354
G D +DID+T + LEP++ GGL VP GKD + VFRPPE++S LGLDVLAN KR
Sbjct: 6 GDDAIDIDRTTLLLEPENNTEGGLSVP--GKD-KPVFRPPERRSHLGLDVLANAKRGGSN 62
Query: 355 EAVFKVPRE 381
+ FK+P++
Sbjct: 63 DNGFKIPQQ 71
>ref|XP_006364743.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like [Solanum tuberosum]
Length = 1285
Score = 66.6 bits (161), Expect = 3e-09
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR-KSKGEAV 363
+D+D+T TLEPD GGL VP GK+ RVVF+P E+KS+LGLD LA KR + E+
Sbjct: 9 IDLDKTTTTLEPDKTSSGGLFVP--GKE-RVVFKPSERKSLLGLDALAIAKRGGATVESE 65
Query: 364 FKVPRERM 387
FKVPRER+
Sbjct: 66 FKVPRERL 73
>ref|XP_004249090.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like [Solanum lycopersicum]
Length = 1285
Score = 66.6 bits (161), Expect = 3e-09
Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR-KSKGEAV 363
+D+D+T TLEPD GGL VP GK+ RVVF+P E+KS+LGLD LA KR + E+
Sbjct: 9 IDLDKTTTTLEPDKTSSGGLFVP--GKE-RVVFKPSERKSLLGLDALAIAKRGGATVESE 65
Query: 364 FKVPRERM 387
FKVPRER+
Sbjct: 66 FKVPRERL 73
>gb|EYU42101.1| hypothetical protein MIMGU_mgv1a000307mg [Mimulus guttatus]
Length = 1272
Score = 65.5 bits (158), Expect = 7e-09
Identities = 41/63 (65%), Positives = 48/63 (76%), Gaps = 1/63 (1%)
Frame = +1
Query: 202 TMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR-KSKGEAVFKVPR 378
T TL PDD +GGL VP GKD +VVFRP ++KSILGLDVLAN KR +SK E FKVP+
Sbjct: 2 TTDTLVPDDSSIGGLLVP--GKD-KVVFRP-QRKSILGLDVLANAKRLESKVEGSFKVPK 57
Query: 379 ERM 387
ER+
Sbjct: 58 ERV 60
>ref|XP_006849874.1| hypothetical protein AMTR_s00022p00074370 [Amborella trichopoda]
gi|548853472|gb|ERN11455.1| hypothetical protein
AMTR_s00022p00074370 [Amborella trichopoda]
Length = 1340
Score = 62.8 bits (151), Expect = 5e-08
Identities = 38/67 (56%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 IDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPP-EKKSILGLDVLANQKRKSKGEAVFK 369
+D+T LEPD GGL VP GKD RV+FRPP E+KSILGLD LA K K E FK
Sbjct: 7 LDETKDVLEPDKGSKGGLYVP--GKD-RVIFRPPPERKSILGLDALAIAKGGRKSEHGFK 63
Query: 370 VPRERMI 390
VP +R++
Sbjct: 64 VPMDRIV 70
>ref|XP_003547002.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like isoform X1 [Glycine max]
Length = 1272
Score = 61.6 bits (148), Expect = 1e-07
Identities = 38/68 (55%), Positives = 48/68 (70%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKGEAVF 366
+DID+ TLEP+ GGL VP GKD R+V+ P E+KS LGLD LA+ KR S+ +A F
Sbjct: 13 VDIDKITATLEPEKPTSGGLYVP--GKD-RMVYVPQERKSRLGLDALASAKR-SQHDAGF 68
Query: 367 KVPRERMI 390
KVP+ER I
Sbjct: 69 KVPKERTI 76
>ref|XP_006595050.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like isoform X2 [Glycine max]
gi|571503064|ref|XP_006595051.1| PREDICTED:
pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like isoform X3 [Glycine max]
Length = 1271
Score = 61.2 bits (147), Expect = 1e-07
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +1
Query: 166 DTEGFD*MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRK 345
D G +DID+T TLE + GGL VP GKD RVV+ P E+KS LGLD LA+ KR
Sbjct: 4 DGTGAGVIDIDKTTTTLEQEKPTSGGLYVP--GKD-RVVYVPQERKSRLGLDALASAKR- 59
Query: 346 SKGEAVFKVPRERMI 390
S+ + FKVP+ER I
Sbjct: 60 SQHDVGFKVPKERTI 74
>ref|NP_001059742.1| Os07g0508000 [Oryza sativa Japonica Group]
gi|33146483|dbj|BAC79592.1| putative DEAH-box RNA
helicase [Oryza sativa Japonica Group]
gi|113611278|dbj|BAF21656.1| Os07g0508000 [Oryza sativa
Japonica Group]
Length = 1280
Score = 61.2 bits (147), Expect = 1e-07
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = +1
Query: 190 DIDQTMVTLEP-DDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKGEAVF 366
D+D TM TL P DD G GL +P+ +RV++RPP KS LGLD+LA++KR+++G F
Sbjct: 4 DMDATMTTLGPEDDTGAQGLILPSR---DRVMYRPPPGKSALGLDLLAHRKREAEGGNAF 60
Query: 367 KVPRERMI 390
K P ++++
Sbjct: 61 KPPPQKVV 68
>ref|XP_003542053.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like isoform X1 [Glycine max]
Length = 1270
Score = 61.2 bits (147), Expect = 1e-07
Identities = 40/75 (53%), Positives = 49/75 (65%)
Frame = +1
Query: 166 DTEGFD*MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRK 345
D G +DID+T TLE + GGL VP GKD RVV+ P E+KS LGLD LA+ KR
Sbjct: 4 DGTGAGVIDIDKTTTTLEQEKPTSGGLYVP--GKD-RVVYVPQERKSRLGLDALASAKR- 59
Query: 346 SKGEAVFKVPRERMI 390
S+ + FKVP+ER I
Sbjct: 60 SQHDVGFKVPKERTI 74
>gb|EEE67241.1| hypothetical protein OsJ_24387 [Oryza sativa Japonica Group]
Length = 1370
Score = 61.2 bits (147), Expect = 1e-07
Identities = 32/68 (47%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Frame = +1
Query: 190 DIDQTMVTLEP-DDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKGEAVF 366
D+D TM TL P DD G GL +P+ +RV++RPP KS LGLD+LA++KR+++G F
Sbjct: 11 DMDATMTTLGPEDDTGAQGLILPSR---DRVMYRPPPGKSALGLDLLAHRKREAEGGNAF 67
Query: 367 KVPRERMI 390
K P ++++
Sbjct: 68 KPPPQKVV 75
>gb|EEC82118.1| hypothetical protein OsI_26143 [Oryza sativa Indica Group]
Length = 1287
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/68 (47%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +1
Query: 190 DIDQTMVTLEP-DDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKGEAVF 366
D+D TM TL P DD G GL +P+ +RV++RPP KS LGLD+LA++KR+++G F
Sbjct: 11 DMDATMTTLGPEDDTGAQGLILPSR---DRVMYRPPPGKSALGLDLLAHRKREAEGGNAF 67
Query: 367 KVPRERMI 390
K P +++
Sbjct: 68 KPPPPKVV 75
>ref|XP_003597474.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Medicago
truncatula] gi|355486522|gb|AES67725.1|
Pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16 [Medicago truncatula]
Length = 1269
Score = 58.9 bits (141), Expect = 7e-07
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR-KSKGEAV 363
+DI++T TLEP+ GGL VP GKD RVV+ PE+KS LGLD LA KR +S+ +
Sbjct: 11 VDINKTTTTLEPEKSTGGGLYVP--GKD-RVVYVAPERKSRLGLDTLAIAKRGESQSDGA 67
Query: 364 FKVPRE 381
FKVP+E
Sbjct: 68 FKVPKE 73
>ref|XP_004487236.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like [Cicer arietinum]
Length = 1254
Score = 58.2 bits (139), Expect = 1e-06
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +1
Query: 175 GFD*MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRK-SK 351
G + +D+++T VTLEP+ GGL VP GKD RVV+ PE+KS GLD LA KR S+
Sbjct: 7 GAEIVDVNKTTVTLEPEKSISGGLYVP--GKD-RVVYVQPERKSRFGLDTLAIAKRAGSQ 63
Query: 352 GEAVFKVPRE 381
+ FKVP+E
Sbjct: 64 SDGAFKVPKE 73
>ref|XP_003563048.1| PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16-like [Brachypodium distachyon]
Length = 1258
Score = 57.0 bits (136), Expect = 3e-06
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKGEAVF 366
+D+D T TL P+D GL +P RV++RPP KS LGLD+LA++KR+ +G F
Sbjct: 7 IDLDATTSTLGPEDDTAQGLILP---NKERVLYRPPPGKSALGLDLLAHRKREKEGNNAF 63
Query: 367 KVPRERMI 390
K P ++++
Sbjct: 64 KPPPQKVL 71
>gb|EMS52676.1| Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Triticum
urartu]
Length = 1264
Score = 56.2 bits (134), Expect = 4e-06
Identities = 29/68 (42%), Positives = 44/68 (64%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKGEAVF 366
+D+D T TL P+D GL +P K V++RPP +S LGLD+LA++KR+ +G F
Sbjct: 7 LDLDATTSTLGPEDDTAQGLILPTKDK---VMYRPPPGRSALGLDLLAHKKREKEGNNSF 63
Query: 367 KVPRERMI 390
K P E+++
Sbjct: 64 KRPPEKVV 71
>ref|XP_002316148.2| hypothetical protein POPTR_0010s17940g [Populus trichocarpa]
gi|550330040|gb|EEF02319.2| hypothetical protein
POPTR_0010s17940g [Populus trichocarpa]
Length = 1284
Score = 55.8 bits (133), Expect = 6e-06
Identities = 34/70 (48%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVG--VGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKR--KSKG 354
MDID+++VT+E + GGL VP K ++ FRPPE+KS+LGLDVLA KR
Sbjct: 1 MDIDKSVVTMEAEQSNGSAGGLFVP---KKEKLEFRPPERKSLLGLDVLAIAKRGGSDAN 57
Query: 355 EAVFKVPRER 384
FK P+ER
Sbjct: 58 GGGFKAPKER 67
>dbj|BAK00252.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1263
Score = 55.8 bits (133), Expect = 6e-06
Identities = 30/68 (44%), Positives = 43/68 (63%)
Frame = +1
Query: 187 MDIDQTMVTLEPDDVGVGGLQVPATGKDNRVVFRPPEKKSILGLDVLANQKRKSKGEAVF 366
+D+D T TL P+D GL +P K V++RPP KS LGLD+LA++KR+ G F
Sbjct: 7 LDLDATTSTLGPEDDTAQGLILPIKDK---VMYRPPPGKSALGLDLLAHKKREKDGTNSF 63
Query: 367 KVPRERMI 390
K P E+++
Sbjct: 64 KRPPEKVV 71