BLASTX nr result
ID: Cocculus23_contig00036337
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00036337
(837 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 57 3e-19
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 74 1e-14
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 59 1e-13
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 59 1e-13
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 80 7e-13
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 80 7e-13
gb|AAD39277.1|AC007203_9 Hypothetical protein [Arabidopsis thali... 67 1e-12
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 79 3e-12
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 61 5e-12
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 61 5e-12
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 61 5e-12
gb|AAD24652.1| putative non-LTR retroelement reverse transcripta... 77 6e-12
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 60 9e-12
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 77 1e-11
gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana] 76 1e-11
emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|72678... 76 1e-11
ref|XP_004248946.1| PREDICTED: putative ribonuclease H protein A... 48 2e-11
ref|XP_004234855.1| PREDICTED: putative ribonuclease H protein A... 49 2e-11
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali... 76 2e-11
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 74 5e-11
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 57.0 bits (136), Expect(3) = 3e-19
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Frame = +3
Query: 384 LKHNFIWIVCPETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNNS 563
L+H W ++ SW WK IL RP+ ++ + +G G + W D WSN L+
Sbjct: 903 LRHVNFWNAEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAI 962
Query: 564 GESCRSGSGLMRHAPLKD--------LPLAIQSSNLVVDLQSQFANPPSAAAE-DPDSVF 716
G S +G+ A + + LP A + + +L+S N P+ + + D+
Sbjct: 963 GASGPQLTGIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYT 1022
Query: 717 WNIN*SG--SFSLSLAWNTIR 773
W I S SFS L W +R
Sbjct: 1023 WYIEGSSSTSFSSKLTWECLR 1043
Score = 55.1 bits (131), Expect(3) = 3e-19
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFL----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVARV 304
+S F +P L+ IE +C +FL ++R +SW C PK EG LGLR +
Sbjct: 818 LSSFILPKCCLKTIEQMCNRFLWGNDITRRGDIKVSWQNSCLPKAEGGLGLRNFWTWNKT 877
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
L+L+W + + ++SL V W L F+
Sbjct: 878 LNLRLIWMLFARRDSLWVAWNHANRLRHVNFW 909
Score = 30.0 bits (66), Expect(3) = 3e-19
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 60 WKAEYISYAGRLALIKQILHASFLFW 137
W + +S+AGRL LI +++++ FW
Sbjct: 792 WATKTLSFAGRLQLISSVIYSTVNFW 817
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 74.3 bits (181), Expect(2) = 1e-14
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARV 304
++ FR+P +R I+ +C+ FL S L P + W +CKPK+EG LGLR +KE+ V
Sbjct: 353 LAAFRLPRECIREIDKICSAFLWSGPDLNPRKTRVCWGDVCKPKQEGGLGLRSLKEMNEV 412
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
LKL+W I+S SL V+WI+ L F+
Sbjct: 413 SCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFW 444
Score = 32.3 bits (72), Expect(2) = 1e-14
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 60 WKAEYISYAGRLALIKQILHASFLFWSA 143
W Y+SYAGRL LI +L + FW A
Sbjct: 327 WTTRYLSYAGRLNLITSVLWSICNFWLA 354
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 58.5 bits (140), Expect(3) = 1e-13
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSK----RKLYPISWDKICKPKEEGCLGLRRIKEVARV 304
+S F +P +++IESLC++FL + RK +SW C PK EG LG R E +
Sbjct: 679 MSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKT 738
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
+L+L+W + SL +W + L A F+
Sbjct: 739 LLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770
Score = 43.1 bits (100), Expect(3) = 1e-13
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Frame = +3
Query: 384 LKHNFIWIVCPETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNNS 563
L H W V W+WK +L RP+ E+ + +G G + W D W++ L+
Sbjct: 764 LGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYL 823
Query: 564 GESCRSGSGLMRHAPLKD--------LPLAIQSSNLVVD-LQSQFAN-PPSAAAEDPDSV 713
G+ + A + D LPL S +L D + S A+ PP + DS
Sbjct: 824 GDVGSRPLRIPFSAKVADAIDGSGWRLPL---SRSLTADSILSHLASLPPPSPLMVSDSY 880
Query: 714 FWNIN--*SGSFSLSLAWNTIR 773
W ++ FS + W +R
Sbjct: 881 SWCVDDVDCQGFSAAKTWEVLR 902
Score = 21.2 bits (43), Expect(3) = 1e-13
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2
Query: 806 IWFKGYIP*H 835
+WFKG +P H
Sbjct: 914 VWFKGAVPKH 923
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 58.5 bits (140), Expect(3) = 1e-13
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSK----RKLYPISWDKICKPKEEGCLGLRRIKEVARV 304
+S F +P +++IESLC++FL + RK +SW C PK EG LG R E +
Sbjct: 679 MSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSSKVSWVDCCLPKSEGGLGFRSFGEWNKT 738
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
+L+L+W + SL +W + L A F+
Sbjct: 739 LLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770
Score = 43.1 bits (100), Expect(3) = 1e-13
Identities = 37/142 (26%), Positives = 58/142 (40%), Gaps = 12/142 (8%)
Frame = +3
Query: 384 LKHNFIWIVCPETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNNS 563
L H W V W+WK +L RP+ E+ + +G G + W D W++ L+
Sbjct: 764 LGHASFWQVNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYL 823
Query: 564 GESCRSGSGLMRHAPLKD--------LPLAIQSSNLVVD-LQSQFAN-PPSAAAEDPDSV 713
G+ + A + D LPL S +L D + S A+ PP + DS
Sbjct: 824 GDVGSRPLRIPFSAKVADAIDGSGWRLPL---SRSLTADSILSHLASLPPPSPLMVSDSY 880
Query: 714 FWNIN--*SGSFSLSLAWNTIR 773
W ++ FS + W +R
Sbjct: 881 SWCVDDVDCQGFSAAKTWEVLR 902
Score = 21.2 bits (43), Expect(3) = 1e-13
Identities = 6/10 (60%), Positives = 8/10 (80%)
Frame = +2
Query: 806 IWFKGYIP*H 835
+WFKG +P H
Sbjct: 914 VWFKGAVPKH 923
>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 80.5 bits (197), Expect = 7e-13
Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSKRKLY----PISWDKICKPKEEGCLGLRRIKEVARV 304
+S FR+P A L+ I S+C+ FL S +L+ +SWD ICKPK+EG LGLR + E V
Sbjct: 231 MSAFRLPSACLKEINSICSAFLWSGPELHRRKAKVSWDDICKPKQEGGLGLRSLTEANVV 290
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
+LKL+W + S+ +SL VKW + L + F+
Sbjct: 291 SVLKLIWRVTSNDDSLWVKWSKMNLLKQESFW 322
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 80.5 bits (197), Expect = 7e-13
Identities = 42/93 (45%), Positives = 58/93 (62%), Gaps = 4/93 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFL----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVARV 304
+S F++P A ++ IE LC+ FL N K ISW+++CKPK EG LGLR +KE V
Sbjct: 379 LSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKAKISWNQVCKPKSEGGLGLRSLKEANDV 438
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFYL 403
LKL+W IIS +SL VKW++ L F++
Sbjct: 439 CCLKLVWRIISHGDSLWVKWVEHNLLKREIFWI 471
>gb|AAD39277.1|AC007203_9 Hypothetical protein [Arabidopsis thaliana]
Length = 355
Score = 66.6 bits (161), Expect(2) = 1e-12
Identities = 35/81 (43%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Frame = +2
Query: 140 SCFRIPGAILRRIESLCAQFLNS----KRKLYPISWDKICKPKEEGCLGLRRIKEVARVF 307
S FR+PG ++ IE LC+ FL S K I+W K+C P EG LGLR +KE+ V
Sbjct: 72 SAFRLPGNCMKEIERLCSAFLWSGPDLKTHNAKIAWSKVCLPMCEGGLGLRPLKEINTVC 131
Query: 308 ILKLLWWIISDKESL*VKWIQ 370
LKL+W +++ + SL +W+Q
Sbjct: 132 GLKLIWRLLASQTSLWGQWVQ 152
Score = 33.5 bits (75), Expect(2) = 1e-12
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 60 WKAEYISYAGRLALIKQILHASFLFWSAVSASQVP 164
W ++SY GRL LIK +L + FWS SA ++P
Sbjct: 45 WTGRFLSYCGRLQLIKSVLMSITNFWS--SAFRLP 77
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 78.6 bits (192), Expect = 3e-12
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 8/141 (5%)
Frame = +2
Query: 2 KLAIAECCPIIDRVRAAPGMES*IYLLRRP----VSSD*TNPPRFLLILVSCFRIPGAIL 169
+L+ +C P++++VR G + +L +SS + F L + FR+P +
Sbjct: 780 RLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWL---AAFRLPRKCI 836
Query: 170 RRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARVFILKLLWWIIS 337
R +E +C+ FL S ++ ISW +CKPK+EG LGLR +KE V LKL+W I+S
Sbjct: 837 RELEKMCSAFLWSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVS 896
Query: 338 DKESL*VKWIQGRSLLEAQFY 400
SL VKW+ L A F+
Sbjct: 897 HSNSLWVKWVDQHLLRNASFW 917
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 60.8 bits (146), Expect(2) = 5e-12
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 152 IPGAILRRIESLCAQFL----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVARVFILKL 319
+P + I+ C FL + RKL+ ++W +ICKP+ EG LGLR ++ R F+ K+
Sbjct: 1346 LPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKM 1405
Query: 320 LWWIISDKESL*VKWIQGRSLLEAQF 397
W I S+ + L VK ++ + + A F
Sbjct: 1406 AWQIFSNIDKLWVKVLREKYVKNADF 1431
Score = 37.0 bits (84), Expect(2) = 5e-12
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 381 YLKHNFIWIVCPETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNN 560
Y+K+ + ++N SW W+ I+K + ++ + +G G KI W D W L +N
Sbjct: 1425 YVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASN 1484
Query: 561 S 563
+
Sbjct: 1485 T 1485
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 60.8 bits (146), Expect(2) = 5e-12
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 152 IPGAILRRIESLCAQFL----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVARVFILKL 319
+P + I+ C FL + RKL+ ++W +ICKP+ EG LGLR ++ R F+ K+
Sbjct: 814 LPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKM 873
Query: 320 LWWIISDKESL*VKWIQGRSLLEAQF 397
W I S+ + L VK ++ + + A F
Sbjct: 874 AWQIFSNIDKLWVKVLREKYVKNADF 899
Score = 37.0 bits (84), Expect(2) = 5e-12
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 381 YLKHNFIWIVCPETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNN 560
Y+K+ + ++N SW W+ I+K + ++ + +G G KI W D W L +N
Sbjct: 893 YVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASN 952
Query: 561 S 563
+
Sbjct: 953 T 953
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 60.8 bits (146), Expect(2) = 5e-12
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Frame = +2
Query: 152 IPGAILRRIESLCAQFL----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVARVFILKL 319
+P + I+ C FL + RKL+ ++W +ICKP+ EG LGLR ++ R F+ K+
Sbjct: 814 LPVSTCNEIDKTCRNFLWGHDTNTRKLHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKM 873
Query: 320 LWWIISDKESL*VKWIQGRSLLEAQF 397
W I S+ + L VK ++ + + A F
Sbjct: 874 AWQIFSNIDKLWVKVLREKYVKNADF 899
Score = 37.0 bits (84), Expect(2) = 5e-12
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +3
Query: 381 YLKHNFIWIVCPETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNN 560
Y+K+ + ++N SW W+ I+K + ++ + +G G KI W D W L +N
Sbjct: 893 YVKNADFLHLQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASN 952
Query: 561 S 563
+
Sbjct: 953 T 953
>gb|AAD24652.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 977
Score = 77.4 bits (189), Expect = 6e-12
Identities = 41/89 (46%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Frame = +2
Query: 146 FRIPGAILRRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARVFIL 313
FR+P +R I+ LC+ FL S + L P +SWD +CKPK+EG LGLR +KE V L
Sbjct: 786 FRLPRECIRDIDKLCSSFLWSGQDLNPRKAKVSWDDVCKPKKEGGLGLRSLKEANDVCCL 845
Query: 314 KLLWWIISDKESL*VKWIQGRSLLEAQFY 400
K++W I+S SL VKWI+ L F+
Sbjct: 846 KVVWKIVSHGNSLWVKWIEKFLLKNETFW 874
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 60.5 bits (145), Expect(2) = 9e-12
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Frame = +2
Query: 140 SCFRIPGAILRRIESLCAQFL-----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVARV 304
S F P L+++E +C FL NS R ISW+ +C PKE G LGL+R+ R+
Sbjct: 821 SVFIFPNQCLQKLEQMCNAFLWSGAPNSARGA-KISWNIVCSPKEAGGLGLKRLSSWNRI 879
Query: 305 FILKLLWWIISDKESL*VKWIQ 370
LKL+W + + SL V W++
Sbjct: 880 LALKLIWLLFTSAGSLWVSWVR 901
Score = 36.6 bits (83), Expect(2) = 9e-12
Identities = 12/29 (41%), Positives = 23/29 (79%)
Frame = +3
Query: 60 WKAEYISYAGRLALIKQILHASFLFWSAV 146
W A ++S+AGRL L+K +++++ FW++V
Sbjct: 794 WTARHLSFAGRLQLLKSVIYSTINFWASV 822
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 76.6 bits (187), Expect = 1e-11
Identities = 47/145 (32%), Positives = 75/145 (51%), Gaps = 15/145 (10%)
Frame = +2
Query: 2 KLAIAECCPIIDRVRAAPGM--------ES*IYLLRRPVSSD*TNPPRFLLILVSCFRIP 157
++ +A+C P+++++R+ + LL +SS +S FR+P
Sbjct: 1035 RMTLADCLPLLEKIRSRISSWKNRFLSYAGRLQLLNSVISS-------LTKFWISAFRLP 1087
Query: 158 GAILRRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARVFILKLLW 325
A +R IE + A FL S L P ++W +CKPK EG LGLR + + ++ KL+W
Sbjct: 1088 RACIREIEQISAAFLWSGTDLNPHKAKVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIW 1147
Query: 326 WIISDKESL*VKWIQG---RSLLEA 391
++S K SL V WIQ R++ EA
Sbjct: 1148 RLVSAKHSLWVNWIQNNLIRTVAEA 1172
>gb|AAC62779.1| F11O4.2 [Arabidopsis thaliana]
Length = 382
Score = 76.3 bits (186), Expect = 1e-11
Identities = 41/92 (44%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARV 304
+S FR+P ++ IE LC+ FL S L P +SW +CKPK+EG LGLR +KE+ V
Sbjct: 243 LSAFRLPRGCIKEIEKLCSAFLWSGPDLNPHKAKLSWVDVCKPKQEGGLGLRPLKEINDV 302
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
LKL+W ++S SL V+WI+ + LL+A +
Sbjct: 303 CCLKLIWRLVSHANSLWVQWIE-KYLLKADTF 333
>emb|CAB39942.1| putative protein [Arabidopsis thaliana] gi|7267871|emb|CAB78214.1|
putative protein [Arabidopsis thaliana]
Length = 473
Score = 76.3 bits (186), Expect = 1e-11
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARV 304
+ FR+P +R I+ +C+ +L S +L I+W +CKPKEEG LGLR +KE V
Sbjct: 75 MGAFRLPRDCIREIDKMCSAYLWSGGELNTSKAKITWAFVCKPKEEGGLGLRSLKEANDV 134
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
LKL+W IIS +SL VKWIQ L + F+
Sbjct: 135 CCLKLIWRIISHADSLWVKWIQSSLLKKVSFW 166
>ref|XP_004248946.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 622
Score = 47.8 bits (112), Expect(3) = 2e-11
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 134 LVSCFRIPGAILRRIESLCAQFL----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVAR 301
L+S P I+R+I+ L A F N ++K + SW + P EEG +G+R +++V +
Sbjct: 136 LLSAVIPPKTIIRQIQMLIADFFWGWKNDRKKYHRSSWKNLSYPYEEGGIGMRNLQDVCK 195
Query: 302 VFILKLLWWIISDKESL 352
F K WW K++L
Sbjct: 196 SFQFK-HWWSFRTKQTL 211
Score = 41.6 bits (96), Expect(3) = 2e-11
Identities = 37/135 (27%), Positives = 50/135 (37%), Gaps = 15/135 (11%)
Frame = +3
Query: 417 ETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNNSGESCRSGSG-- 590
+T S WK +L R MEQ + + GN W D W L ++ S R +
Sbjct: 232 DTGQSLMWKNMLDTRQQMEQHIHWKLQAGN-YSFWWDNWLGTGPLAQHTASSNRFNNSIV 290
Query: 591 -------------LMRHAPLKDLPLAIQSSNLVVDLQSQFANPPSAAAEDPDSVFWNIN* 731
L+RHAP+ L SS L + Q PD W +N
Sbjct: 291 ANFWENGEWKWRKLVRHAPITHL-----SSILATRIPQQ--------QHRPDQAIWKLNI 337
Query: 732 SGSFSLSLAWNTIRS 776
G F AW+ IR+
Sbjct: 338 HGRFDCKSAWDEIRN 352
Score = 26.2 bits (56), Expect(3) = 2e-11
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 57 GWKAEYISYAGRLALIKQILHA 122
GW+ + +SY G+ L K +L A
Sbjct: 110 GWQTKQLSYGGKAVLSKHVLEA 131
>ref|XP_004234855.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Solanum
lycopersicum]
Length = 440
Score = 48.5 bits (114), Expect(3) = 2e-11
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Frame = +2
Query: 155 PGAILRRIESLCAQFL----NSKRKLYPISWDKICKPKEEGCLGLRRIKEVARVFILKLL 322
P I+R+I+ L A F N ++K + SW + P EEG +G+R +++V + F K
Sbjct: 112 PTTIIRQIQMLIADFFWGWKNDRKKYHWSSWKNLSYPYEEGGIGMRNLQDVCKSFQFK-Q 170
Query: 323 WWIISDKESL 352
WW+ K++L
Sbjct: 171 WWVFRTKQTL 180
Score = 40.8 bits (94), Expect(3) = 2e-11
Identities = 38/135 (28%), Positives = 48/135 (35%), Gaps = 15/135 (11%)
Frame = +3
Query: 417 ETNASWSWKRILKFRPIMEQ*VS*IMGRGNKIRTWLDPWSNYEVLVNNSGESCRSG---- 584
+T S +WK +L R +EQ + + GN W D W L ++ S R
Sbjct: 201 DTGESLTWKHMLDTRQQVEQHIHWNLQAGN-CSFWWDNWLGTGPLAQHTTSSNRFNNITV 259
Query: 585 -----------SGLMRHAPLKDLPLAIQSSNLVVDLQSQFANPPSAAAEDPDSVFWNIN* 731
S LM+HAP V L S A PD W N
Sbjct: 260 AEFLENGEWKWSKLMKHAP-------------VTQLSSILATRIPQHQHRPDQAIWKPNT 306
Query: 732 SGSFSLSLAWNTIRS 776
G FS + AW IRS
Sbjct: 307 HGRFSCTSAWEEIRS 321
Score = 26.2 bits (56), Expect(3) = 2e-11
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 57 GWKAEYISYAGRLALIKQILHA 122
GW+ + +SY G+ L K +L A
Sbjct: 79 GWQTKQLSYGGKAVLSKHVLQA 100
>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 75.9 bits (185), Expect = 2e-11
Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARV 304
+ FR+P +R I+ +C+ +L S +L I+W +CKPKEEG LGLR +KE V
Sbjct: 156 MGAFRLPRDCIREIDKMCSAYLWSGGELNTSKAKIAWAFVCKPKEEGGLGLRSLKEANDV 215
Query: 305 FILKLLWWIISDKESL*VKWIQGRSLLEAQFY 400
LKL+W IIS +SL VKWIQ SLL+ F+
Sbjct: 216 CCLKLIWRIISHADSLWVKWIQS-SLLKKVFF 246
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 74.3 bits (181), Expect = 5e-11
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Frame = +2
Query: 137 VSCFRIPGAILRRIESLCAQFLNSKRKLYP----ISWDKICKPKEEGCLGLRRIKEVARV 304
++ FR+P +R I+ LC+ FL S ++ ISWD +CKPK EG LGLR +KE V
Sbjct: 473 LAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDV 532
Query: 305 FILKLLWWIISDKESL*VKWI 367
LKL+W IIS+ SL KW+
Sbjct: 533 SCLKLVWRIISNSNSLWTKWV 553