BLASTX nr result
ID: Cocculus23_contig00036188
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00036188
(343 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007132512.1| hypothetical protein PHAVU_011G100500g [Phas... 51 3e-11
gb|EYU22111.1| hypothetical protein MIMGU_mgv1a000730mg [Mimulus... 50 5e-11
ref|XP_006582373.1| PREDICTED: replication factor C subunit 1-li... 50 4e-10
ref|XP_006487829.1| PREDICTED: replication factor C subunit 1-li... 47 1e-09
ref|XP_006424055.1| hypothetical protein CICLE_v10027762mg [Citr... 47 1e-09
gb|EXB57307.1| Replication factor C subunit 1 [Morus notabilis] 45 2e-09
ref|XP_007199003.1| hypothetical protein PRUPE_ppa000922mg [Prun... 47 3e-09
ref|XP_006592363.1| PREDICTED: replication factor C subunit 1-li... 49 3e-09
ref|XP_006592364.1| PREDICTED: replication factor C subunit 1-li... 49 3e-09
ref|XP_004506246.1| PREDICTED: replication factor C subunit 1-li... 48 4e-09
ref|XP_002298160.2| hypothetical protein POPTR_0001s22140g [Popu... 46 5e-09
ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-li... 44 5e-09
ref|XP_006400706.1| hypothetical protein EUTSA_v10012587mg [Eutr... 47 1e-08
ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis ... 42 4e-08
ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana] gi... 41 7e-08
ref|XP_006287008.1| hypothetical protein CARUB_v10000156mg [Caps... 41 2e-07
ref|XP_007010535.1| Replication factor C subunit 1 [Theobroma ca... 40 1e-06
>ref|XP_007132512.1| hypothetical protein PHAVU_011G100500g [Phaseolus vulgaris]
gi|561005512|gb|ESW04506.1| hypothetical protein
PHAVU_011G100500g [Phaseolus vulgaris]
Length = 938
Score = 50.8 bits (120), Expect(2) = 3e-11
Identities = 24/40 (60%), Positives = 28/40 (70%)
Frame = +3
Query: 33 KPEKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
+PEK G QES+GRR TSKYF QK K+EKET+ PA
Sbjct: 35 QPEKNVAGGQESSGRRVTSKYFNTNKQKVKEEKETQELPA 74
Score = 42.7 bits (99), Expect(2) = 3e-11
Identities = 19/35 (54%), Positives = 27/35 (77%)
Frame = +2
Query: 239 LPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
LP+ +K E TP+KKLKS +G+G+ KKSV +EE+
Sbjct: 101 LPTNKKKLAEATPTKKLKSGSGRGIPKKSVVLEES 135
>gb|EYU22111.1| hypothetical protein MIMGU_mgv1a000730mg [Mimulus guttatus]
Length = 1000
Score = 50.1 bits (118), Expect(2) = 5e-11
Identities = 24/47 (51%), Positives = 29/47 (61%)
Frame = +3
Query: 12 KRSVLNSKPEKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
K S +P K + QE +GRRKTSKYFA +GQ KDE + E PA
Sbjct: 27 KPSTPEKRPGKMVEEVQELSGRRKTSKYFAKDGQGVKDEMDVEEAPA 73
Score = 42.7 bits (99), Expect(2) = 5e-11
Identities = 18/30 (60%), Positives = 25/30 (83%)
Frame = +2
Query: 242 PSARKTSVEVTPSKKLKSATGKGVVKKSVD 331
P++RK+SV +TP+KKLKS +GKGV +K D
Sbjct: 106 PTSRKSSVSITPNKKLKSGSGKGVAQKIAD 135
>ref|XP_006582373.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
Length = 938
Score = 49.7 bits (117), Expect(2) = 4e-10
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = +3
Query: 39 EKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
EKT G QES+GRR TSKYF + QK KDEKE + PA
Sbjct: 31 EKTVAGGQESSGRRITSKYFNSNKQKGKDEKEKQELPA 68
Score = 40.0 bits (92), Expect(2) = 4e-10
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 239 LPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
LP+ +K + TP+KKLKS +G+G+ KKS +EE+
Sbjct: 89 LPTNKKKLADTTPTKKLKSGSGRGIPKKSAVLEES 123
>ref|XP_006487829.1| PREDICTED: replication factor C subunit 1-like isoform X1 [Citrus
sinensis] gi|568869228|ref|XP_006487830.1| PREDICTED:
replication factor C subunit 1-like isoform X2 [Citrus
sinensis]
Length = 958
Score = 46.6 bits (109), Expect(2) = 1e-09
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +2
Query: 191 KKLHKXXXXXXXXIFELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
KK HK F PS +K SV TPSKKLKS +G+ V +KSVDI+++
Sbjct: 91 KKFHKADDDDDD--FVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDD 139
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +3
Query: 54 GTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
G ES GRRKTSKYFA + QK +D E E PA
Sbjct: 41 GGHESMGRRKTSKYFATDKQKPEDGGEKEELPA 73
>ref|XP_006424055.1| hypothetical protein CICLE_v10027762mg [Citrus clementina]
gi|557525989|gb|ESR37295.1| hypothetical protein
CICLE_v10027762mg [Citrus clementina]
Length = 958
Score = 46.6 bits (109), Expect(2) = 1e-09
Identities = 25/51 (49%), Positives = 32/51 (62%)
Frame = +2
Query: 191 KKLHKXXXXXXXXIFELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
KK HK F PS +K SV TPSKKLKS +G+ V +KSVDI+++
Sbjct: 91 KKFHKADDDDDD--FVPPSVKKNSVGATPSKKLKSGSGRAVAQKSVDIDDD 139
Score = 41.2 bits (95), Expect(2) = 1e-09
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +3
Query: 54 GTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
G ES GRRKTSKYFA + QK +D E E PA
Sbjct: 41 GGHESMGRRKTSKYFATDKQKPEDGGEKEELPA 73
>gb|EXB57307.1| Replication factor C subunit 1 [Morus notabilis]
Length = 1047
Score = 45.4 bits (106), Expect(2) = 2e-09
Identities = 22/38 (57%), Positives = 28/38 (73%)
Frame = +3
Query: 36 PEKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTP 149
PE+ QG+Q+++GRRKTSKYF+ E K KDEKE P
Sbjct: 117 PEEPVQGSQDNSGRRKTSKYFSAE--KPKDEKEMVEVP 152
Score = 42.0 bits (97), Expect(2) = 2e-09
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +2
Query: 188 AKKLHKXXXXXXXXIFELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
AKK+HK F LP+ ++ V TP KKLKS +G+G +K +DI+E+
Sbjct: 170 AKKIHKVDDDDD---FVLPNTKEKPVASTPRKKLKSGSGRGTGQKPLDIDES 218
>ref|XP_007199003.1| hypothetical protein PRUPE_ppa000922mg [Prunus persica]
gi|462394403|gb|EMJ00202.1| hypothetical protein
PRUPE_ppa000922mg [Prunus persica]
Length = 961
Score = 46.6 bits (109), Expect(2) = 3e-09
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +2
Query: 188 AKKLHKXXXXXXXXIFELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEE 340
AKK+HK F LP ++K SV+ TPSKKLKSA+G GV +K I+E
Sbjct: 80 AKKVHKVVDDDDD--FVLPHSKKNSVDATPSKKLKSASGVGVPQKLTAIDE 128
Score = 40.0 bits (92), Expect(2) = 3e-09
Identities = 22/43 (51%), Positives = 26/43 (60%)
Frame = +3
Query: 12 KRSVLNSKPEKTTQGTQESTGRRKTSKYFANEGQKSKDEKETE 140
K + S+ T G QE+ GRRKTSKYF + K K EKETE
Sbjct: 20 KPAPTTSQTPSTVHGGQENPGRRKTSKYFTTD--KPKAEKETE 60
>ref|XP_006592363.1| PREDICTED: replication factor C subunit 1-like isoform X1 [Glycine
max]
Length = 949
Score = 48.9 bits (115), Expect(2) = 3e-09
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 PPDKRSVLNSKP--EKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
P ++ + KP EKT G QES+GRR TSKYF + QK KD+KE + PA
Sbjct: 23 PSNQPKPSSDKPQSEKTVAGGQESSGRRITSKYFNSNKQKGKDKKEMQELPA 74
Score = 37.7 bits (86), Expect(2) = 3e-09
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 239 LPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
LP+ +K + TP+KKLKS +G+G+ +KS +EE+
Sbjct: 101 LPTNKKKLADTTPTKKLKSGSGRGLPQKSAVLEES 135
>ref|XP_006592364.1| PREDICTED: replication factor C subunit 1-like isoform X2 [Glycine
max]
Length = 947
Score = 48.9 bits (115), Expect(2) = 3e-09
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Frame = +3
Query: 3 PPDKRSVLNSKP--EKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
P ++ + KP EKT G QES+GRR TSKYF + QK KD+KE + PA
Sbjct: 23 PSNQPKPSSDKPQSEKTVAGGQESSGRRITSKYFNSNKQKGKDKKEMQELPA 74
Score = 37.7 bits (86), Expect(2) = 3e-09
Identities = 16/35 (45%), Positives = 26/35 (74%)
Frame = +2
Query: 239 LPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
LP+ +K + TP+KKLKS +G+G+ +KS +EE+
Sbjct: 101 LPTNKKKLADTTPTKKLKSGSGRGLPQKSAVLEES 135
>ref|XP_004506246.1| PREDICTED: replication factor C subunit 1-like [Cicer arietinum]
Length = 997
Score = 48.1 bits (113), Expect(2) = 4e-09
Identities = 25/49 (51%), Positives = 29/49 (59%)
Frame = +3
Query: 6 PDKRSVLNSKPEKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
P K S + P+KT Q S+GRRKTSKYF + K KDE ET PA
Sbjct: 25 PKKPSPVKPDPDKTVPEGQSSSGRRKTSKYFNTDKPKPKDEIETGALPA 73
Score = 38.1 bits (87), Expect(2) = 4e-09
Identities = 18/36 (50%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +2
Query: 239 LPSARKTSVE-VTPSKKLKSATGKGVVKKSVDIEEN 343
+PS K + TP+KKLKS +G+G+ +KSVD+EE+
Sbjct: 90 VPSTNKKKLAGSTPTKKLKSGSGRGIPQKSVDLEES 125
>ref|XP_002298160.2| hypothetical protein POPTR_0001s22140g [Populus trichocarpa]
gi|550347876|gb|EEE82965.2| hypothetical protein
POPTR_0001s22140g [Populus trichocarpa]
Length = 981
Score = 46.2 bits (108), Expect(2) = 5e-09
Identities = 23/40 (57%), Positives = 26/40 (65%)
Frame = +3
Query: 33 KPEKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
K E G QE +GRRKTSKYFA QK K++KE E PA
Sbjct: 34 KTETPVCGGQEGSGRRKTSKYFAANKQKQKEDKEIEDLPA 73
Score = 39.7 bits (91), Expect(2) = 5e-09
Identities = 19/52 (36%), Positives = 31/52 (59%)
Frame = +2
Query: 188 AKKLHKXXXXXXXXIFELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
+KK+HK F LP + + +PSKKLKS++G+G+ +K V + E+
Sbjct: 90 SKKVHKVDDEEEDDDFSLPKKKN---DASPSKKLKSSSGRGIAQKPVHVNES 138
>ref|XP_004156105.1| PREDICTED: replication factor C subunit 1-like [Cucumis sativus]
Length = 942
Score = 43.5 bits (101), Expect(2) = 5e-09
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +3
Query: 42 KTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
KT ES GR+ TSKYFA+E Q++KD +ETE +PA
Sbjct: 38 KTGPSGGESAGRQITSKYFASEKQEAKDAEETEESPA 74
Score = 42.4 bits (98), Expect(2) = 5e-09
Identities = 19/33 (57%), Positives = 26/33 (78%)
Frame = +2
Query: 239 LPSARKTSVEVTPSKKLKSATGKGVVKKSVDIE 337
L S++K EVTP+KKLKS +GKG+ +K V+IE
Sbjct: 106 LSSSKKNMSEVTPNKKLKSGSGKGITQKPVEIE 138
>ref|XP_006400706.1| hypothetical protein EUTSA_v10012587mg [Eutrema salsugineum]
gi|557101796|gb|ESQ42159.1| hypothetical protein
EUTSA_v10012587mg [Eutrema salsugineum]
Length = 962
Score = 46.6 bits (109), Expect(2) = 1e-08
Identities = 22/37 (59%), Positives = 31/37 (83%)
Frame = +2
Query: 233 FELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
FE+P++RKT + TPSKKLKS +G+GV K+VDI+E+
Sbjct: 107 FEVPNSRKTR-DSTPSKKLKSGSGRGVTSKAVDIDED 142
Score = 38.1 bits (87), Expect(2) = 1e-08
Identities = 18/31 (58%), Positives = 20/31 (64%)
Frame = +3
Query: 60 QESTGRRKTSKYFANEGQKSKDEKETERTPA 152
QES RRKTSKYF + +KDEKE PA
Sbjct: 48 QESAARRKTSKYFGKDKTIAKDEKEVGEIPA 78
>ref|XP_002874040.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297319877|gb|EFH50299.1| AAA-type ATPase family
protein [Arabidopsis lyrata subsp. lyrata]
Length = 960
Score = 41.6 bits (96), Expect(2) = 4e-08
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 15 RSVLNSKPEKTTQGTQ--ESTGRRKTSKYFANEGQKSKDEKETERTPA 152
R+ + P K+ Q ++ E+ RRKTSK+F + K KDEKE E PA
Sbjct: 31 RNAAETAPLKSEQASEDLETAARRKTSKFFGKDKTKVKDEKEVEEIPA 78
Score = 41.2 bits (95), Expect(2) = 4e-08
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +2
Query: 233 FELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
F++P +RKT + TPSKKLKS +G+G+ K+VD +E+
Sbjct: 109 FDVPISRKTR-DSTPSKKLKSGSGRGIASKTVDNDED 144
>ref|NP_680188.1| replication factor C1 [Arabidopsis thaliana]
gi|75168909|sp|Q9C587.1|RFC1_ARATH RecName:
Full=Replication factor C subunit 1; Short=AtRFC1;
AltName: Full=Activator 1 large subunit; AltName:
Full=Activator 1 subunit 1 gi|13374860|emb|CAC34494.1|
replication factor C large subunit-like protein
[Arabidopsis thaliana] gi|48958527|gb|AAT47816.1|
At5g22010 [Arabidopsis thaliana]
gi|332005585|gb|AED92968.1| replication factor C1
[Arabidopsis thaliana]
Length = 956
Score = 41.2 bits (95), Expect(2) = 7e-08
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +3
Query: 15 RSVLNSKPEKTTQGTQ--ESTGRRKTSKYFANEGQKSKDEKETERTPA 152
++ + P K+ Q ++ E+ RRKTSKYF + K KDEKE E PA
Sbjct: 31 KNAAETAPIKSEQASEDLETADRRKTSKYFGKDKTKVKDEKEVEAIPA 78
Score = 40.8 bits (94), Expect(2) = 7e-08
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +2
Query: 233 FELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
F++P +RKT + TPSKKLKS +G+G+ K+VD +++
Sbjct: 108 FDVPISRKTR-DTTPSKKLKSGSGRGIASKTVDNDDD 143
>ref|XP_006287008.1| hypothetical protein CARUB_v10000156mg [Capsella rubella]
gi|482555714|gb|EOA19906.1| hypothetical protein
CARUB_v10000156mg [Capsella rubella]
Length = 953
Score = 41.2 bits (95), Expect(2) = 2e-07
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = +3
Query: 33 KPEKTTQGTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
KPE+ ++ ++ RRKTSKYF + K KDEKE E PA
Sbjct: 36 KPEQASEDL-DTAARRKTSKYFGKDKTKVKDEKEVEELPA 74
Score = 39.7 bits (91), Expect(2) = 2e-07
Identities = 18/37 (48%), Positives = 29/37 (78%)
Frame = +2
Query: 233 FELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
F++P +RKT + TPSKKLKS +G+G+ K+V+ +E+
Sbjct: 103 FDVPISRKTR-DSTPSKKLKSGSGRGIASKTVEKDED 138
>ref|XP_007010535.1| Replication factor C subunit 1 [Theobroma cacao]
gi|508727448|gb|EOY19345.1| Replication factor C subunit
1 [Theobroma cacao]
Length = 1012
Score = 40.0 bits (92), Expect(2) = 1e-06
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +2
Query: 233 FELPSARKTSVEVTPSKKLKSATGKGVVKKSVDIEEN 343
F LP +R T V+VTPSKK KS +G+GV +K+ D +E+
Sbjct: 96 FVLPKSRNT-VDVTPSKKRKSGSGRGVAQKAEDNDES 131
Score = 38.1 bits (87), Expect(2) = 1e-06
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 27 NSKPEKTTQ--GTQESTGRRKTSKYFANEGQKSKDEKETERTPA 152
N P T G +E++GRRKTSKYF Q+ K E+ TE PA
Sbjct: 24 NPAPTNTDSVPGGRENSGRRKTSKYFPAGKQQPKGEQGTEELPA 67