BLASTX nr result

ID: Cocculus23_contig00035953 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00035953
         (840 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN75156.1| hypothetical protein VITISV_042643 [Vitis vinifera]    50   2e-06
ref|XP_004162147.1| PREDICTED: putative ribonuclease H protein A...    42   3e-06
emb|CAN70431.1| hypothetical protein VITISV_030910 [Vitis vinifera]    50   9e-06
emb|CAN72548.1| hypothetical protein VITISV_035350 [Vitis vinifera]    50   9e-06

>emb|CAN75156.1| hypothetical protein VITISV_042643 [Vitis vinifera]
          Length = 721

 Score = 49.7 bits (117), Expect(2) = 2e-06
 Identities = 28/79 (35%), Positives = 44/79 (55%)
 Frame = -1

Query: 537 KVPTLRYILAVACINTVNTLQNYGGLSQKVN*HKCSCSPQWCSLCRRDDENFDNLFLHCH 358
           KV  L +++A   +NT + LQ    L +    +K  C PQWC LC+R+ E+ D+LFLHC 
Sbjct: 561 KVKALAWLVAHGKVNTNDKLQ----LRRP---YKALC-PQWCILCKRNGESIDHLFLHCP 612

Query: 357 FSSYIWAKVYMRSVGCWSP 301
            +  +W +++      W P
Sbjct: 613 VTIGLWHRLFNLVGVIWVP 631



 Score = 28.9 bits (63), Expect(2) = 2e-06
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 220 LWFIWLDRCQRTIQDTSKTADQVWE 146
           +W +W +R  R  +D  +T + VW+
Sbjct: 664 IWMVWQERNNRIFEDKGRTEEVVWD 688


>ref|XP_004162147.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 218

 Score = 42.4 bits (98), Expect(2) = 3e-06
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = -1

Query: 501 CINTVNTLQNYGGLSQKVN*HKCSCSPQWCSLCRRDDENFDNLFLHCHFSSYIWAKV 331
           CINT++ LQ              +  P WC LC+  +E+  +LF HC +++ +W KV
Sbjct: 74  CINTMDMLQR--------RLPTWTIKPSWCILCKAAEEDRQHLFTHCPYTTLLWKKV 122



 Score = 36.2 bits (82), Expect(2) = 3e-06
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 292 CMDSYSGRRLK*RQLMSNYEANIALWFIWLDRCQRTIQDTSKTADQVWE 146
           C D +  +    +Q+++ +     LW IW +R +R  ++  K AD VWE
Sbjct: 139 CKDLFKTKGKTQKQIINQHLVAATLWNIWNERNRRIFKEEEKKADSVWE 187


>emb|CAN70431.1| hypothetical protein VITISV_030910 [Vitis vinifera]
          Length = 971

 Score = 50.1 bits (118), Expect(2) = 9e-06
 Identities = 29/79 (36%), Positives = 44/79 (55%)
 Frame = -1

Query: 537 KVPTLRYILAVACINTVNTLQNYGGLSQKVN*HKCSCSPQWCSLCRRDDENFDNLFLHCH 358
           KV  L +I+A   +NT + LQ    L +    +K  C PQWC LC+ + E+ D+LFLHC 
Sbjct: 716 KVKALAWIVAHGKVNTNDKLQ----LRRP---YKALC-PQWCILCKANGESIDHLFLHCP 767

Query: 357 FSSYIWAKVYMRSVGCWSP 301
            +  +W K++  +   W P
Sbjct: 768 VTIGLWNKLFKMAGLDWVP 786



 Score = 26.6 bits (57), Expect(2) = 9e-06
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -3

Query: 220 LWFIWLDRCQRTIQDTSKTADQVWE 146
           +W +W +R +R  +D  ++ + +W+
Sbjct: 819 VWIVWQERNKRIFEDKGRSEETLWD 843


>emb|CAN72548.1| hypothetical protein VITISV_035350 [Vitis vinifera]
          Length = 306

 Score = 50.1 bits (118), Expect(2) = 9e-06
 Identities = 29/79 (36%), Positives = 44/79 (55%)
 Frame = -1

Query: 537 KVPTLRYILAVACINTVNTLQNYGGLSQKVN*HKCSCSPQWCSLCRRDDENFDNLFLHCH 358
           KV  L +I+A   +NT + LQ    L +    +K  C PQWC LC+ + E+ D+LFLHC 
Sbjct: 156 KVKALAWIVAHGKVNTNDKLQ----LRRP---YKALC-PQWCILCKANGESIDHLFLHCP 207

Query: 357 FSSYIWAKVYMRSVGCWSP 301
            +  +W K++  +   W P
Sbjct: 208 VTIGLWNKLFKMAGLDWVP 226



 Score = 26.6 bits (57), Expect(2) = 9e-06
 Identities = 6/25 (24%), Positives = 16/25 (64%)
 Frame = -3

Query: 220 LWFIWLDRCQRTIQDTSKTADQVWE 146
           +W +W +R +R  +D  ++ + +W+
Sbjct: 259 VWIVWQERNKRIFEDKGRSEETLWD 283


Top