BLASTX nr result
ID: Cocculus23_contig00035693
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cocculus23_contig00035693
(555 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides] 140 2e-31
gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii] 122 6e-26
emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera] 82 9e-14
emb|CAN69647.1| hypothetical protein VITISV_022133 [Vitis vinifera] 82 9e-14
gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subc... 81 2e-13
emb|CAN80083.1| hypothetical protein VITISV_011293 [Vitis vinifera] 81 2e-13
emb|CAN67240.1| hypothetical protein VITISV_037460 [Vitis vinifera] 81 2e-13
emb|CAN61815.1| hypothetical protein VITISV_009920 [Vitis vinifera] 81 2e-13
ref|XP_007014689.1| Uncharacterized protein TCM_040047 [Theobrom... 80 3e-13
gb|ABA91195.1| retrotransposon protein, putative, Ty1-copia subc... 80 3e-13
gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum] 80 3e-13
emb|CAN79142.1| hypothetical protein VITISV_040460 [Vitis vinifera] 80 3e-13
gb|ABB47665.1| retrotransposon protein, putative, unclassified, ... 80 4e-13
ref|NP_001175213.1| Os07g0500000 [Oryza sativa Japonica Group] g... 80 4e-13
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi... 80 4e-13
gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. ... 79 6e-13
gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arab... 79 8e-13
ref|NP_001061315.2| Os08g0236200 [Oryza sativa Japonica Group] g... 79 8e-13
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera] 79 8e-13
emb|CAN75041.1| hypothetical protein VITISV_027174 [Vitis vinifera] 79 1e-12
>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
Length = 1382
Score = 140 bits (354), Expect = 2e-31
Identities = 66/94 (70%), Positives = 75/94 (79%)
Frame = -2
Query: 284 AYSL*LYPFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGY 105
++S L PF GH PDYSS RVFGCT FVL PHV+RNKLSSRSA CVFL YGEG+KGY
Sbjct: 683 SHSSGLSPFEKLYGHVPDYSSFRVFGCTYFVLHPHVERNKLSSRSAICVFLGYGEGKKGY 742
Query: 104 RCFDHVAQKLYVSRHVLFLEHIPFFTIPGSMHDV 3
RCFD + QKLYVS HV+FLEHIPFF+IP + H +
Sbjct: 743 RCFDPITQKLYVSHHVVFLEHIPFFSIPSTTHSL 776
>gb|AGJ83729.1| gag-pol polyprotein, partial [Caragana korshinskii]
Length = 732
Score = 122 bits (306), Expect = 6e-26
Identities = 58/81 (71%), Positives = 67/81 (82%)
Frame = -2
Query: 269 LYPFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDH 90
L PF PDYSSL+VFG TCFVLRP V+R+KLSSRSA CVFL YG+GQKGYRC+D
Sbjct: 204 LSPFEKLYASVPDYSSLKVFGSTCFVLRPQVERSKLSSRSAICVFLGYGDGQKGYRCYDP 263
Query: 89 VAQKLYVSRHVLFLEHIPFFT 27
A+KLYVSRHV+FLEHIPF++
Sbjct: 264 HARKLYVSRHVVFLEHIPFYS 284
>emb|CAN83125.1| hypothetical protein VITISV_015109 [Vitis vinifera]
Length = 1355
Score = 82.0 bits (201), Expect = 9e-14
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Frame = -2
Query: 236 PDYSSLRVFGCTCFV-LRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVSRH 60
PD S L+VFGCTCFV L +R+KL R+ CVFL Y + QKGYRC+D A++L+VSR
Sbjct: 711 PDLSHLKVFGCTCFVHLSATQRRDKLDPRAVKCVFLGYSQTQKGYRCYDTTAKRLFVSRD 770
Query: 59 VLFLEHIPFF 30
V F+E P F
Sbjct: 771 VQFVETSPIF 780
>emb|CAN69647.1| hypothetical protein VITISV_022133 [Vitis vinifera]
Length = 2655
Score = 82.0 bits (201), Expect = 9e-14
Identities = 39/68 (57%), Positives = 46/68 (67%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G PDY LR FG CFVL + NKL RS C FL YGE QKGYRC+D V+ +L+VS
Sbjct: 1988 GSPPDYHHLRSFGSXCFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRLHVS 2047
Query: 65 RHVLFLEH 42
R+V+F EH
Sbjct: 2048 RNVVFWEH 2055
>gb|ABF95666.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 976
Score = 81.3 bits (199), Expect = 2e-13
Identities = 41/82 (50%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = -2
Query: 263 PFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVA 84
PF+ G P Y LRVFGC C+ NKLS RS CVF SY KGYRCFD +
Sbjct: 396 PFFALYGTHPSYDHLRVFGCKCYPNLSATAANKLSPRSTLCVFRSYPTDHKGYRCFDPIY 455
Query: 83 QKLYVSRHVLFLEH-IPFFTIP 21
++Y+SRHV+F EH PF P
Sbjct: 456 NRVYISRHVVFDEHSFPFAEKP 477
>emb|CAN80083.1| hypothetical protein VITISV_011293 [Vitis vinifera]
Length = 777
Score = 80.9 bits (198), Expect = 2e-13
Identities = 39/68 (57%), Positives = 46/68 (67%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G P+Y LR FG CFVL + NKL SRS C FL YGE QKGYRC+D V+ +L VS
Sbjct: 106 GSPPNYHHLRSFGSACFVLLQPHEHNKLESRSRLCCFLGYGETQKGYRCYDPVSHRLRVS 165
Query: 65 RHVLFLEH 42
R+V+F EH
Sbjct: 166 RNVVFWEH 173
>emb|CAN67240.1| hypothetical protein VITISV_037460 [Vitis vinifera]
Length = 1174
Score = 80.9 bits (198), Expect = 2e-13
Identities = 39/68 (57%), Positives = 45/68 (66%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G PDY LR FG CFVL + NKL RS C FL YGE QKGYRC+D V+ +L VS
Sbjct: 516 GSPPDYHHLRSFGSACFVLLQPHEHNKLEPRSTLCCFLGYGETQKGYRCYDLVSHRLRVS 575
Query: 65 RHVLFLEH 42
R+V+F EH
Sbjct: 576 RNVVFWEH 583
>emb|CAN61815.1| hypothetical protein VITISV_009920 [Vitis vinifera]
Length = 1064
Score = 80.9 bits (198), Expect = 2e-13
Identities = 39/68 (57%), Positives = 45/68 (66%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G PDY LR FG CFVL + NKL SRS C FL YGE QKGYRC+D V+ +L VS
Sbjct: 468 GSPPDYHHLRSFGSACFVLLQPHEHNKLESRSRLCCFLGYGETQKGYRCYDPVSHRLRVS 527
Query: 65 RHVLFLEH 42
+V+F EH
Sbjct: 528 HNVVFWEH 535
>ref|XP_007014689.1| Uncharacterized protein TCM_040047 [Theobroma cacao]
gi|508785052|gb|EOY32308.1| Uncharacterized protein
TCM_040047 [Theobroma cacao]
Length = 678
Score = 80.1 bits (196), Expect = 3e-13
Identities = 35/70 (50%), Positives = 47/70 (67%)
Frame = -2
Query: 236 PDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVSRHV 57
P+YS L+VFGC C+ ++KL +S CVFL Y Q Y+CFDH +Q+++VSRHV
Sbjct: 394 PNYSKLKVFGCLCYPWLKPYNKHKLQPKSKPCVFLRYSINQSAYKCFDHESQRIFVSRHV 453
Query: 56 LFLEHIPFFT 27
+F EHI FT
Sbjct: 454 MFQEHIFPFT 463
>gb|ABA91195.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 978
Score = 80.1 bits (196), Expect = 3e-13
Identities = 40/82 (48%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = -2
Query: 263 PFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVA 84
PF + PDYS+LRVFGC C+ +KLS RSA CVFL Y KG+RC D
Sbjct: 241 PFQLLHNKLPDYSNLRVFGCLCYPNLSATTPHKLSPRSAACVFLGYPASHKGFRCLDIST 300
Query: 83 QKLYVSRHVLFLEH-IPFFTIP 21
+ LY+SRHV+F E PF +P
Sbjct: 301 RHLYISRHVVFDEQTFPFAAVP 322
>gb|ADK92880.1| retrotransposon 4 protein [Hypericum perforatum]
Length = 1347
Score = 80.1 bits (196), Expect = 3e-13
Identities = 37/69 (53%), Positives = 45/69 (65%)
Frame = -2
Query: 236 PDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVSRHV 57
PD S LRVFGC CFV P KR+KL R+ C+FL Y QKGYRCFD + + ++SR V
Sbjct: 632 PDLSYLRVFGCCCFVHVPAGKRDKLDKRAVKCIFLGYSRNQKGYRCFDPESGQRFISRDV 691
Query: 56 LFLEHIPFF 30
F+E FF
Sbjct: 692 RFIEDQAFF 700
>emb|CAN79142.1| hypothetical protein VITISV_040460 [Vitis vinifera]
Length = 1293
Score = 80.1 bits (196), Expect = 3e-13
Identities = 40/74 (54%), Positives = 47/74 (63%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G PDY LR FG CFVL + NKL RS C FL YGE QKGYRC+D V+ +L VS
Sbjct: 499 GSPPDYHHLRSFGFACFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRLRVS 558
Query: 65 RHVLFLEHIPFFTI 24
+V+F EH FF +
Sbjct: 559 CNVVFWEHRLFFEL 572
>gb|ABB47665.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group] gi|78708691|gb|ABB47666.1|
retrotransposon protein, putative, unclassified,
expressed [Oryza sativa Japonica Group]
Length = 1682
Score = 79.7 bits (195), Expect = 4e-13
Identities = 37/72 (51%), Positives = 48/72 (66%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G P Y LRVFGCTC+VL +R KL+++S CVFL Y KGYRC+D A+++ +S
Sbjct: 540 GSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSLEHKGYRCYDPSARRIRIS 599
Query: 65 RHVLFLEHIPFF 30
R V F E+ PFF
Sbjct: 600 RDVTFDENKPFF 611
>ref|NP_001175213.1| Os07g0500000 [Oryza sativa Japonica Group]
gi|255677790|dbj|BAH93941.1| Os07g0500000 [Oryza sativa
Japonica Group]
Length = 662
Score = 79.7 bits (195), Expect = 4e-13
Identities = 37/72 (51%), Positives = 48/72 (66%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G P Y LRVFGCTC+VL +R KL+++S CVFL Y KGYRC+D A+++ +S
Sbjct: 318 GSPPRYDHLRVFGCTCYVLLAPRERTKLTAQSVECVFLGYSLEHKGYRCYDPSARRIRIS 377
Query: 65 RHVLFLEHIPFF 30
R V F E+ PFF
Sbjct: 378 RDVTFDENKPFF 389
>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1149
Score = 79.7 bits (195), Expect = 4e-13
Identities = 38/73 (52%), Positives = 44/73 (60%)
Frame = -2
Query: 263 PFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVA 84
P+ G APDYS+LR FGC CF RNK RS C+FL Y E KGYRCF
Sbjct: 658 PYQVLFGKAPDYSALRTFGCACFPTLRAYARNKFDPRSLKCIFLGYTEKYKGYRCFFPPT 717
Query: 83 QKLYVSRHVLFLE 45
++Y+SRHVLF E
Sbjct: 718 NRVYLSRHVLFDE 730
>gb|ACP30598.1| disease resistance protein [Brassica rapa subsp. pekinensis]
Length = 2301
Score = 79.3 bits (194), Expect = 6e-13
Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Frame = -2
Query: 263 PFYF*NGHAPDYSSLRVFGCTCF-VLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHV 87
P+ + +P Y +LR+FGC CF +LRP+ +NKL RS CVFL Y E KGYRC
Sbjct: 674 PYEKLHNKSPSYDALRIFGCACFPMLRPYT-QNKLDPRSLQCVFLGYSEKYKGYRCLLPA 732
Query: 86 AQKLYVSRHVLFLE-HIPFFTIPGSMH 9
++Y+SRHV+F E PF + G +H
Sbjct: 733 TGRVYISRHVIFDESKFPFADVYGHLH 759
>gb|AAG10812.1|AC018460_6 Putative retroelement polyprotein [Arabidopsis thaliana]
Length = 1404
Score = 79.0 bits (193), Expect = 8e-13
Identities = 37/76 (48%), Positives = 47/76 (61%)
Frame = -2
Query: 269 LYPFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDH 90
L PF N P LRVFGC CFVL P +R+KL ++S C+FL Y QKGY+CFD
Sbjct: 660 LSPFEVLNNTKPFIDHLRVFGCVCFVLIPGEQRSKLDAKSTKCMFLGYSTTQKGYKCFDP 719
Query: 89 VAQKLYVSRHVLFLEH 42
+ ++SR V FLE+
Sbjct: 720 TKNRTFISRDVKFLEN 735
>ref|NP_001061315.2| Os08g0236200 [Oryza sativa Japonica Group]
gi|255678262|dbj|BAF23229.2| Os08g0236200 [Oryza sativa
Japonica Group]
Length = 624
Score = 79.0 bits (193), Expect = 8e-13
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = -2
Query: 263 PFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVA 84
P+ + PDYS+LRVFGC C+ +KLS RSA CVFL Y KG+RC D
Sbjct: 269 PYQLLHNKLPDYSNLRVFGCLCYPNLSATTPHKLSPRSAPCVFLGYPASHKGFRCLDIST 328
Query: 83 QKLYVSRHVLFLEH-IPFFTIP 21
++LY+SRHV+F + PF IP
Sbjct: 329 RRLYISRHVVFDDKTFPFAAIP 350
>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
Length = 1171
Score = 79.0 bits (193), Expect = 8e-13
Identities = 35/76 (46%), Positives = 47/76 (61%)
Frame = -2
Query: 269 LYPFYF*NGHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDH 90
L P++ + P Y LRVFGC C+ L +KL+ RS C+FL Y QKGYRC D
Sbjct: 667 LTPYFLLHKTEPTYMDLRVFGCACYPLLRPYNDHKLTFRSKKCIFLGYSNCQKGYRCLDL 726
Query: 89 VAQKLYVSRHVLFLEH 42
+++Y+SRHV+F EH
Sbjct: 727 ATKRVYISRHVIFDEH 742
>emb|CAN75041.1| hypothetical protein VITISV_027174 [Vitis vinifera]
Length = 1381
Score = 78.6 bits (192), Expect = 1e-12
Identities = 38/68 (55%), Positives = 45/68 (66%)
Frame = -2
Query: 245 GHAPDYSSLRVFGCTCFVLRPHVKRNKLSSRSANCVFLSYGEGQKGYRCFDHVAQKLYVS 66
G P+Y LR FG CFVL + NKL RS C FL YGE QKGYRC+D V+ +L VS
Sbjct: 697 GSPPNYHHLRSFGSXCFVLLQPHEHNKLEPRSRLCCFLGYGETQKGYRCYDPVSHRLRVS 756
Query: 65 RHVLFLEH 42
R+V+F EH
Sbjct: 757 RNVVFWEH 764