BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00034884
         (665 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB73912.1| polyprotein [Citrus sinensis]                          349   4e-94
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              347   3e-93
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              346   4e-93
gb|AFB73911.1| polyprotein [Citrus sinensis]                          344   1e-92
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              343   2e-92
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              343   4e-92
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]                  333   4e-89
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]                             327   2e-87
gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospe...   201   1e-49
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     196   4e-48
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   196   4e-48
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        195   1e-47
gb|AAL31093.1|AC091749_22 putative retrotransposon-related prote...   194   2e-47
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   194   3e-47
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     193   5e-47
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   192   6e-47
ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group] g...   192   6e-47
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]     192   6e-47
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   192   8e-47
ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group] g...   192   8e-47

>gb|AFB73912.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  349 bits (896), Expect = 4e-94
 Identities = 172/220 (78%), Positives = 190/220 (86%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTIKIKM+DGT+RTI+ VRHV GL KNLLSLGQ+D  GCK  VE GIMKIV+GALV MKA
Sbjct: 334 GTIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGALVLMKA 393

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           EKI +NL+ML GETLQE DA VAS    EESTMMWH KLGHMSEQGLKIL +RKL PGLK
Sbjct: 394 EKICANLFMLKGETLQEADACVASNG--EESTMMWHLKLGHMSEQGLKILSERKLPPGLK 451

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
            V+LPFCEHCVTSKQHRLKFSRS ARS C+L L+HSDVWESP +S+GGAKY V+FIDDYS
Sbjct: 452 SVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDDYS 511

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RRCWVYPIK K+DVF +FK +KA VELESGK+IKCLRTDN
Sbjct: 512 RRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDN 551


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  347 bits (889), Expect = 3e-93
 Identities = 167/220 (75%), Positives = 194/220 (88%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTI++KM+DGTVR IQGVRHVKGL KNLLS+GQLD+LGCK   E GI+K+V+G LV MKA
Sbjct: 333 GTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKA 392

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           EKITSNLYMLLG+TLQE DASVA+ +S EE+TMMWH++LGHMSE+GLK+L +R LL GLK
Sbjct: 393 EKITSNLYMLLGDTLQEADASVAA-ASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLK 451

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
            VNLPFCEHCV SKQHRLKF+R T RS  +L L+HSDVWESP LSLGGA+YFVSFIDDYS
Sbjct: 452 TVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPELSLGGARYFVSFIDDYS 511

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RR WVYPIK K+DVF +FK FKA++ELE+GK+IKCLRTDN
Sbjct: 512 RRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDN 551


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  346 bits (887), Expect = 4e-93
 Identities = 167/220 (75%), Positives = 194/220 (88%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTI++KM+DGTVR IQGVRHVKGL KNLLS+GQLD+LGCK   E GI+K+V+G LV MKA
Sbjct: 333 GTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGNLVVMKA 392

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           EKITSNLYMLLG+TLQE DASVA+ +S EE+TMMWH++LGHMSE+GLK+L +R LL GLK
Sbjct: 393 EKITSNLYMLLGDTLQEADASVAA-ASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLK 451

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
            VNLPFCEHCV SKQHRLKF+R T RS  +L L+HSDVWESP LSLGGA+YFVSFIDDYS
Sbjct: 452 TVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPKLSLGGARYFVSFIDDYS 511

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RR WVYPIK K+DVF +FK FKA++ELE+GK+IKCLRTDN
Sbjct: 512 RRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDN 551


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  344 bits (883), Expect = 1e-92
 Identities = 171/220 (77%), Positives = 188/220 (85%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTIKIKM+DGT+RTI  VRHV GL KNLLSLGQ+D  G K  VE GIMKIV+GALV MK 
Sbjct: 334 GTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGALVLMKV 393

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           EKI +NL+ML GETLQE DA VAS    EESTMMWH KLGHMSEQGLKIL +RKLLPGLK
Sbjct: 394 EKIGANLFMLKGETLQEADACVASNG--EESTMMWHLKLGHMSEQGLKILSERKLLPGLK 451

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
            V+LPFCEHCVTSKQHRLKFSRS ARS C+L L+HSDVWESP +S+GGAKY V+FIDDYS
Sbjct: 452 SVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDISMGGAKYMVTFIDDYS 511

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RRCWVYPIK K+DVF +FK +KA VELESGK+IKCLRTDN
Sbjct: 512 RRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDN 551


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  343 bits (881), Expect = 2e-92
 Identities = 166/220 (75%), Positives = 193/220 (87%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTI++KM+DGTVR IQGVRHVKGL KNLLS+GQLD+LGCK   E GI+K+V+G LV MKA
Sbjct: 333 GTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKA 392

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           EKITSNLYMLLG+TLQE DASVA+ SS EE+TMMWH++LGHMSE+GLK+L +R LL GLK
Sbjct: 393 EKITSNLYMLLGDTLQEADASVAA-SSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLK 451

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
            VNLPFCEHCV SKQHRLKF+R T RS  +L L+HSDVWESP +SLGGA+YFVSFIDDYS
Sbjct: 452 AVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDDYS 511

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RR WVYPIK K+DVF +FK FKA++ELE+ K+IKCLRTDN
Sbjct: 512 RRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDN 551


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  343 bits (879), Expect = 4e-92
 Identities = 165/220 (75%), Positives = 193/220 (87%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTI++KM+DGTVR IQGVRHVKGL KNLLS+GQLD+LGCK   E GI+K+V+G LV MKA
Sbjct: 333 GTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGNLVVMKA 392

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           EKITSNLYMLLG+TLQE DASVA+ +S EE+TMMWH++LGHMSE+GLK+L +R LL GLK
Sbjct: 393 EKITSNLYMLLGDTLQEADASVAA-ASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLK 451

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
            VNLPFCEHCV SKQHRLKF+R T RS  +L L+HSDVWESP +SLGGA+YFVSFIDDYS
Sbjct: 452 TVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVWESPEISLGGARYFVSFIDDYS 511

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RR WVYPIK K+DVF +FK FKA++ELE+ K+IKCLRTDN
Sbjct: 512 RRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDN 551


>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
          Length = 1305

 Score =  333 bits (853), Expect = 4e-89
 Identities = 158/220 (71%), Positives = 192/220 (87%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GT+KIKMYDGT+RT+Q VRHVK L KNLLS+GQLD+LG K  ++ GI+K+V+G+LV MKA
Sbjct: 333 GTVKIKMYDGTIRTLQEVRHVKELAKNLLSVGQLDDLGYKYDIQGGILKVVKGSLVVMKA 392

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           +K+ +NLYMLLG+T Q  DASVA   S EE+TMMWHR+LGHMSE+GLK+L +R L+PGLK
Sbjct: 393 KKVAANLYMLLGDTWQMADASVA-VGSQEETTMMWHRRLGHMSERGLKVLAERNLIPGLK 451

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
            V+LPFCEHCV SKQHRLKF++STARS  +L L+HSDVWESP +S+GGAKYFVSFIDDYS
Sbjct: 452 SVSLPFCEHCVISKQHRLKFAKSTARSKHILDLIHSDVWESPEVSIGGAKYFVSFIDDYS 511

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RR WVYPIK K+ V+++FK FKA+VELE+GKRIKCLRTDN
Sbjct: 512 RRLWVYPIKKKSGVYSVFKEFKAQVELETGKRIKCLRTDN 551


>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
          Length = 1298

 Score =  327 bits (838), Expect = 2e-87
 Identities = 158/220 (71%), Positives = 184/220 (83%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTIK+KMYDGTV+T+Q VRHVKGL KNLLS G LD    +   +KG+MKI +GALV MK 
Sbjct: 324 GTIKLKMYDGTVQTVQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALVVMKG 383

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           EKI +NLYML GETLQE +ASVA+ S D  ST++WH+KLGHMS+QG+KIL ++KL+PGL 
Sbjct: 384 EKIAANLYMLKGETLQEAEASVAACSPD--STLLWHQKLGHMSDQGMKILVEQKLIPGLT 441

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVWESPVLSLGGAKYFVSFIDDYS 540
           KV+LP CEHC+TSKQHRLKFS S +R   VL LVHSDVW++PV SLGGAKYFVSFIDDYS
Sbjct: 442 KVSLPLCEHCITSKQHRLKFSTSNSRGKVVLELVHSDVWQAPVPSLGGAKYFVSFIDDYS 501

Query: 541 RRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           RRCWVYPIK K+DVF  FK FKARVEL+SGK+IKC RTDN
Sbjct: 502 RRCWVYPIKKKSDVFATFKAFKARVELDSGKKIKCFRTDN 541


>gb|AAC12735.1| putative retrovirus-related polyprotein [Lithospermum
           erythrorhizon]
          Length = 244

 Score =  201 bits (512), Expect = 1e-49
 Identities = 106/223 (47%), Positives = 151/223 (67%), Gaps = 3/223 (1%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GTI++KM+DGT+ T+  VRH++ L KNL+SL  L++ GCK V+E G++K+VR +LV MK 
Sbjct: 17  GTIRVKMHDGTIITLNDVRHIQDLHKNLISLRLLEKNGCKIVLEDGVLKVVRRSLVVMKG 76

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDE--ESTMMWHRKLGHMSEQGLKILFDRKLLPG 354
                NLY L+G T+  GD +V      +  E TM+WH +LGHMSE+GL +L  + LL  
Sbjct: 77  VS-HGNLYPLVG-TMVTGDLAVGVVGHKDQTECTMIWHMRLGHMSEKGLSLLSGQGLLKN 134

Query: 355 LKKVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFID 531
           +KK  + FCEH V  K HRLKF  S  +S  +L  VH+D+W  + V S  G+ YFV+F+D
Sbjct: 135 MKKSCMEFCEHWVYGKTHRLKFFTSKHKSRGLLDYVHTDLWGPAKVNSKDGSWYFVTFVD 194

Query: 532 DYSRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           DYSR  W+Y +K K +VF IFK ++A VE  +G+++K +R+DN
Sbjct: 195 DYSRYAWIYFLKHKNEVFDIFKQWRAMVENRTGRKLKTVRSDN 237


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  196 bits (499), Expect = 4e-48
 Identities = 99/221 (44%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1    GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
            GT++IKM+DG +RT+  VRH+  L ++L+SL  LD  G K     GI+K+ +G+LV MKA
Sbjct: 377  GTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436

Query: 181  EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
            +  ++NLY L G T+    A+V+ + S+ ++T +WH +LGHMSE GL  L  R+LL G  
Sbjct: 437  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQS 496

Query: 361  KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
               L FCEHC+  K  R+KF+ ST  +  +L  VHSD+W  +   S GGA+Y ++ +DDY
Sbjct: 497  IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDY 556

Query: 538  SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
            SR+ W Y +K K   F +FK +K  VE ++ K++K LRTDN
Sbjct: 557  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDN 597


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  196 bits (499), Expect = 4e-48
 Identities = 99/221 (44%), Positives = 144/221 (65%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1    GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
            GT++IKM+DG +RT+  VRH+  L ++L+SL  LD  G K     GI+K+ +G+LV MKA
Sbjct: 377  GTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 436

Query: 181  EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
            +  ++NLY L G T+    A+V+ + S+ ++T +WH +LGHMSE GL  L  R+LL G  
Sbjct: 437  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQS 496

Query: 361  KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
               L FCEHC+  K  R+KF+ ST  +  +L  VHSD+W  +   S GGA+Y ++ +DDY
Sbjct: 497  IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDY 556

Query: 538  SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
            SR+ W Y +K K   F +FK +K  VE ++ K++K LRTDN
Sbjct: 557  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDN 597


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  195 bits (495), Expect = 1e-47
 Identities = 98/221 (44%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1    GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
            GT++IKM+DG +RT+  VRH+  L ++L+SL  LD  G K     GI+K+ +G+LV MKA
Sbjct: 342  GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 401

Query: 181  EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
               ++NLY L G T+    A+V+ + S+ ++T +WH +LGHMSE GL  L  R LL G  
Sbjct: 402  SIKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQS 461

Query: 361  KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
               L FCEHC+  K  R+KF+ ST  +  +L  VHSD+W  +   S GGA+Y ++ +DDY
Sbjct: 462  ISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDY 521

Query: 538  SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
            SR+ W Y +K K   F +FK +K  VE ++ +++K LRTDN
Sbjct: 522  SRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDN 562


>gb|AAL31093.1|AC091749_22 putative retrotransposon-related protein [Oryza sativa Japonica
           Group] gi|22655747|gb|AAN04164.1| Putative
           retrotransposon protein [Oryza sativa Japonica Group]
           gi|31431214|gb|AAP53029.1| retrotransposon protein,
           putative, Ty1-copia subclass, expressed [Oryza sativa
           Japonica Group]
          Length = 1229

 Score =  194 bits (493), Expect = 2e-47
 Identities = 101/222 (45%), Positives = 142/222 (63%), Gaps = 2/222 (0%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           G+++IK +DG  RT++ VRH+ G+ +NL+SL  LD  G K     G++K+ +G+LV M  
Sbjct: 332 GSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIG 391

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEES-TMMWHRKLGHMSEQGLKILFDRKLLPGL 357
           +  ++NLY+L G TL  G  + A+ S DE S T +WH +LGHMSE G+  L  R LL G 
Sbjct: 392 DMNSANLYVLRGSTLH-GSLTAAAVSKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGC 450

Query: 358 KKVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDD 534
            + N+ FCEHCV  K  R+KF+ S  R+  +L  VH+D+W  S   SLGGA Y ++ IDD
Sbjct: 451 TQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGACYMLTIIDD 510

Query: 535 YSRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           YSR+ W Y +K K D F  FK +K  +E ++ K +K LRTDN
Sbjct: 511 YSRKVWPYFLKHKDDTFAAFKEWKVMIERQAEKEVKVLRTDN 552


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
           gi|108708632|gb|ABF96427.1| retrotransposon protein,
           putative, Ty1-copia subclass [Oryza sativa Japonica
           Group]
          Length = 1326

 Score =  194 bits (492), Expect = 3e-47
 Identities = 99/222 (44%), Positives = 141/222 (63%), Gaps = 2/222 (0%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           G+++IK +DG  RT++ VRH+ G+ +NL+SL  LD  G K     G++K+ +G+LV M  
Sbjct: 335 GSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIG 394

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEE-STMMWHRKLGHMSEQGLKILFDRKLLPGL 357
           +  ++NLY+L G TL  G  + A+ S DE   T +WH +LGHMSE G+  L  R LL G 
Sbjct: 395 DMNSANLYVLRGSTLH-GSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGC 453

Query: 358 KKVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDD 534
            +  + FCEHCV  K  R+KF+ S  R+  +L  VH+D+W  S    LGGA+Y ++ IDD
Sbjct: 454 TQGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGGARYMLTIIDD 513

Query: 535 YSRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           YSR+ W Y +K K D F  FK +K R+E ++ K +K LRTDN
Sbjct: 514 YSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDN 555


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  193 bits (490), Expect = 5e-47
 Identities = 98/221 (44%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GT++IKM+DG +RT+  VRH+  L ++L+SL  LD  G K     GI+K+ +G+LV MKA
Sbjct: 251 GTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 310

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           +   +NLY L G T+    A+V+ + S+ ++T +WH +LGHMSE GL  L  R LL G  
Sbjct: 311 DIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQS 370

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
              L FCEHC+  K  R+KF+ ST  +  +L  VHSD+W  +   S GGA+Y ++ +DDY
Sbjct: 371 IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDY 430

Query: 538 SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           SR+ W Y +K K   F +FK +K  VE ++ +++K LRTDN
Sbjct: 431 SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 471


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1278

 Score =  192 bits (489), Expect = 6e-47
 Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           G+++IK +DG  RT++ VRH+ G+ +NL+SL  LD  G K     G++K+ +G+LV M  
Sbjct: 335 GSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIG 394

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           +  ++NLY+L G TL     + A T  +   T +WH +LGHMSE G+  L  R LL G  
Sbjct: 395 DMNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCT 454

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
           + N+ FCE CV  K  R+KF+ S  R+  +L  VH+D+W  S   SLGGA+Y ++ IDDY
Sbjct: 455 QGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGGARYMLTIIDDY 514

Query: 538 SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           SR+ W Y +K K D F  FK +K  +E ++ K +K LRTDN
Sbjct: 515 SRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDN 555


>ref|NP_001172143.1| Os01g0116166 [Oryza sativa Japonica Group]
           gi|255672802|dbj|BAH90873.1| Os01g0116166 [Oryza sativa
           Japonica Group]
          Length = 778

 Score =  192 bits (489), Expect = 6e-47
 Identities = 97/221 (43%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           GT++IKM+DG +RT+  VRH+  L ++L+S   LD  G K     GI+K+ +G+LV MKA
Sbjct: 308 GTVQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKA 367

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
           +  ++NLY L G T+    A+V+ + S+ ++T +WH +LGHMSE GL  L  R LL G  
Sbjct: 368 DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLYGQS 427

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
              L FCEHC+  K  R+KF+ ST  +  +L  VHSD+W  +   S GGA+Y ++ +DDY
Sbjct: 428 IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYIMTIVDDY 487

Query: 538 SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           SR+ W Y +K K   F +FK +K  VE ++ +++K LRTDN
Sbjct: 488 SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 528


>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
          Length = 1297

 Score =  192 bits (489), Expect = 6e-47
 Identities = 96/223 (43%), Positives = 147/223 (65%), Gaps = 3/223 (1%)
 Frame = +1

Query: 1   GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
           G +KI+M+DG VR +  VRH  GL +NL+SL  +D +G     + G++K+ +G +V MK 
Sbjct: 305 GMVKIRMHDGIVRALGNVRHTPGLNRNLISLSTMDRVGFWHKGQNGVLKVGKGQMVYMKG 364

Query: 181 EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
                N+Y L G T++ G    A   ++E+ T +W R+LGHMS++GL+ L  ++ L G+ 
Sbjct: 365 AIQPDNMYKLTGSTVEGG----AGVCTEEDKTELWRRRLGHMSQRGLQELHKKEQLDGVM 420

Query: 361 KVNLPFCEHCVTSKQHRLKFSRSTA--RSNCVLALVHSDVW-ESPVLSLGGAKYFVSFID 531
              L FC +C   KQ R+ F+ S++  +S  VL  +H+DVW  S  +S GGA+YFVSFID
Sbjct: 421 SAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTDVWGPSATISKGGARYFVSFID 480

Query: 532 DYSRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
           D+SR+ W++ +K+K +VFT FK +KA V  ++G++IKCLR+DN
Sbjct: 481 DFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCLRSDN 523


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  192 bits (488), Expect = 8e-47
 Identities = 96/221 (43%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1    GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
            GT++IKM+DG +RT+  VRH+  L ++L+SL  LD  G K     GI+K+ +G+LV MKA
Sbjct: 549  GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 608

Query: 181  EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
            +  ++NLY L G T+    A+V+ + S+ ++T +WH +LGHM+E GL  L  R LL G  
Sbjct: 609  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQS 668

Query: 361  KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
               L FCEHC+  K  R+KF+ ST  +  +L  VHSD+W  +   S GG +Y ++ +DDY
Sbjct: 669  IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDY 728

Query: 538  SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
            SR+ W Y +K K   F +FK +K  VE ++ +++K LRTDN
Sbjct: 729  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 769


>ref|NP_001065797.2| Os11g0157000 [Oryza sativa Japonica Group]
            gi|255679807|dbj|BAF27642.2| Os11g0157000 [Oryza sativa
            Japonica Group]
          Length = 1601

 Score =  192 bits (488), Expect = 8e-47
 Identities = 96/221 (43%), Positives = 142/221 (64%), Gaps = 1/221 (0%)
 Frame = +1

Query: 1    GTIKIKMYDGTVRTIQGVRHVKGLTKNLLSLGQLDELGCKAVVEKGIMKIVRGALVAMKA 180
            GT++IKM+DG +RT+  VRH+  L ++L+SL  LD  G K     GI+K+ +G+LV MKA
Sbjct: 342  GTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKA 401

Query: 181  EKITSNLYMLLGETLQEGDASVASTSSDEESTMMWHRKLGHMSEQGLKILFDRKLLPGLK 360
            +  ++NLY L G T+    A+V+ + S+ ++T +WH +LGHM+E GL  L  R LL G  
Sbjct: 402  DIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQS 461

Query: 361  KVNLPFCEHCVTSKQHRLKFSRSTARSNCVLALVHSDVW-ESPVLSLGGAKYFVSFIDDY 537
               L FCEHC+  K  R+KF+ ST  +  +L  VHSD+W  +   S GG +Y ++ +DDY
Sbjct: 462  IGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDY 521

Query: 538  SRRCWVYPIKSKADVFTIFKTFKARVELESGKRIKCLRTDN 660
            SR+ W Y +K K   F +FK +K  VE ++ +++K LRTDN
Sbjct: 522  SRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDN 562