BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cocculus23_contig00034643
         (1295 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [V...   585   e-164
ref|XP_006472809.1| PREDICTED: replication factor C subunit 3-li...   577   e-162
ref|XP_006434237.1| hypothetical protein CICLE_v10001597mg [Citr...   576   e-162
ref|XP_002520343.1| replication factor C / DNA polymerase III ga...   563   e-158
ref|XP_002302226.1| replication factor C 36 kDA family protein [...   563   e-158
gb|EXB60106.1| Replication factor C subunit 5 [Morus notabilis] ...   562   e-157
ref|XP_003526636.1| PREDICTED: replication factor C subunit 3-li...   560   e-157
ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-li...   558   e-156
ref|XP_004502480.1| PREDICTED: replication factor C subunit 5-li...   557   e-156
ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group] g...   556   e-156
ref|XP_003523440.1| PREDICTED: replication factor C subunit 3-li...   553   e-155
ref|XP_006856708.1| hypothetical protein AMTR_s00054p00174840 [A...   553   e-155
ref|XP_004502481.1| PREDICTED: replication factor C subunit 5-li...   553   e-155
ref|XP_003602039.1| Replication factor C subunit [Medicago trunc...   552   e-154
dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa...   551   e-154
dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgar...   550   e-154
ref|XP_004242038.1| PREDICTED: replication factor C subunit 5-li...   550   e-154
ref|NP_001136580.1| replication factor C subunit 3 [Zea mays] gi...   550   e-154
ref|XP_006365532.1| PREDICTED: replication factor C subunit 3-li...   549   e-154
gb|ACG35868.1| replication factor C subunit 3 [Zea mays]              549   e-153

>ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
            gi|302141794|emb|CBI18997.3| unnamed protein product
            [Vitis vinifera]
          Length = 360

 Score =  585 bits (1508), Expect = e-164
 Identities = 300/350 (85%), Positives = 319/350 (91%), Gaps = 2/350 (0%)
 Frame = -2

Query: 1213 MAEEITEVMEIDSYEEHE-KQRKGKRATVAST-EPKATPWVEKYRPQSLADVAAHRDIVD 1040
            MAE +T VM+ID  + H  K  KGK   V    + KATPWVEKYRPQSLADVAAHRDIVD
Sbjct: 1    MAEAVT-VMDIDEEDNHLLKANKGKSVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVD 59

Query: 1039 TIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQ 860
            TIDRLTSEN+LPHLLLYGPPGTGKTSTILAVARKLYG QFHNMILELNASDDRGIDVVRQ
Sbjct: 60   TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGEQFHNMILELNASDDRGIDVVRQ 119

Query: 859  QIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 680
            QIQDFASTQSFSFG KS VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK
Sbjct: 120  QIQDFASTQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 179

Query: 679  IIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNIL 500
            IIPALQSRCTRFRFAPLDA HVTERLKHVI+AE L+V +SGL ALVRLS+GDMRKALNIL
Sbjct: 180  IIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNIL 239

Query: 499  QSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDI 320
            QSTHMASQ ITEEAVYLCTGNP+PKDIEQISYWLLNESFA  F  IS++KMRKGLALVD+
Sbjct: 240  QSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDV 299

Query: 319  VREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VREVTMF+F+IKMPSDVRV LINDLADIEYRL+F CNDKLQLGSL+++FT
Sbjct: 300  VREVTMFVFKIKMPSDVRVQLINDLADIEYRLSFGCNDKLQLGSLIASFT 349


>ref|XP_006472809.1| PREDICTED: replication factor C subunit 3-like [Citrus sinensis]
          Length = 364

 Score =  577 bits (1488), Expect = e-162
 Identities = 297/353 (84%), Positives = 318/353 (90%), Gaps = 5/353 (1%)
 Frame = -2

Query: 1213 MAE-EITEVMEIDSYEEHEKQRK--GKRATVASTEP--KATPWVEKYRPQSLADVAAHRD 1049
            MAE E   +M+ID  E    + K  GK   V+ T P  KA+PWVEKYRPQSLADVAAHRD
Sbjct: 1    MAEAETVSLMDIDEDENKNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD 60

Query: 1048 IVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDV 869
            IVDTIDRLTSEN+LPHLLLYGPPGTGKTSTILAVARKLYGAQ+HNMILELNASDDRGIDV
Sbjct: 61   IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120

Query: 868  VRQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 689
            VRQQIQDFASTQSFSFGVK+ VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 
Sbjct: 121  VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180

Query: 688  VNKIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKAL 509
            VNKIIPALQSRCTRFRFAPL+  HVTERLKHVI+AEGL+V + GL ALVRL NGDMRKAL
Sbjct: 181  VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240

Query: 508  NILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLAL 329
            NILQSTHMASQ ITEEAVYLCTGNP+PKDIEQISYWLLNESFA  F  IS++KMRKGLAL
Sbjct: 241  NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL 300

Query: 328  VDIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VDIVREVTMF+F+IKMPSDVRV L+NDLADIEYRL+F CNDKLQLGS++STFT
Sbjct: 301  VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353


>ref|XP_006434237.1| hypothetical protein CICLE_v10001597mg [Citrus clementina]
            gi|557536359|gb|ESR47477.1| hypothetical protein
            CICLE_v10001597mg [Citrus clementina]
          Length = 364

 Score =  576 bits (1485), Expect = e-162
 Identities = 296/353 (83%), Positives = 317/353 (89%), Gaps = 5/353 (1%)
 Frame = -2

Query: 1213 MAE-EITEVMEIDSYEEHEKQRK--GKRATVASTEP--KATPWVEKYRPQSLADVAAHRD 1049
            MAE E   +M+ D  E    + K  GK   V+ T P  KA+PWVEKYRPQSLADVAAHRD
Sbjct: 1    MAEAETVSLMDFDEDENQNLKPKDNGKNVIVSGTPPDIKASPWVEKYRPQSLADVAAHRD 60

Query: 1048 IVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDV 869
            IVDTIDRLTSEN+LPHLLLYGPPGTGKTSTILAVARKLYGAQ+HNMILELNASDDRGIDV
Sbjct: 61   IVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 120

Query: 868  VRQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 689
            VRQQIQDFASTQSFSFGVK+ VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICN 
Sbjct: 121  VRQQIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNQ 180

Query: 688  VNKIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKAL 509
            VNKIIPALQSRCTRFRFAPL+  HVTERLKHVI+AEGL+V + GL ALVRL NGDMRKAL
Sbjct: 181  VNKIIPALQSRCTRFRFAPLEPVHVTERLKHVIEAEGLDVTEGGLAALVRLCNGDMRKAL 240

Query: 508  NILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLAL 329
            NILQSTHMASQ ITEEAVYLCTGNP+PKDIEQISYWLLNESFA  F  IS++KMRKGLAL
Sbjct: 241  NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNESFADSFKRISEMKMRKGLAL 300

Query: 328  VDIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VDIVREVTMF+F+IKMPSDVRV L+NDLADIEYRL+F CNDKLQLGS++STFT
Sbjct: 301  VDIVREVTMFVFKIKMPSDVRVRLMNDLADIEYRLSFGCNDKLQLGSIISTFT 353


>ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
            [Ricinus communis] gi|223540562|gb|EEF42129.1|
            replication factor C / DNA polymerase III gamma-tau
            subunit, putative [Ricinus communis]
          Length = 360

 Score =  563 bits (1451), Expect = e-158
 Identities = 288/353 (81%), Positives = 315/353 (89%), Gaps = 5/353 (1%)
 Frame = -2

Query: 1213 MAEEITEVMEIDS-----YEEHEKQRKGKRATVASTEPKATPWVEKYRPQSLADVAAHRD 1049
            MA+ +T +M+ID        +  K  KGK   V   + KATPWVEKYRPQSLADVAAHRD
Sbjct: 1    MADVVT-IMDIDEDVKEKQNQLSKPNKGKNVFV---DTKATPWVEKYRPQSLADVAAHRD 56

Query: 1048 IVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDV 869
            IVDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG Q+HNMILELNASDDRGIDV
Sbjct: 57   IVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGVQYHNMILELNASDDRGIDV 116

Query: 868  VRQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 689
            VRQQIQDFASTQSFSF  KS VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH
Sbjct: 117  VRQQIQDFASTQSFSFDAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 176

Query: 688  VNKIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKAL 509
            VNKIIPALQSRCTRFRFAPLD  HVT+RLKHVI+AEGL+V + GL A+VRLSNGDMRKAL
Sbjct: 177  VNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIEAEGLDVPEPGLAAVVRLSNGDMRKAL 236

Query: 508  NILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLAL 329
            NILQSTHMASQ ITEEAV+LCTGNP+PKDI+QISYWLLNESFA  F  IS+IK +KGLAL
Sbjct: 237  NILQSTHMASQQITEEAVHLCTGNPLPKDIQQISYWLLNESFAESFKRISEIKTKKGLAL 296

Query: 328  VDIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VDIVREVTMF+F+IKMPSDVRV LIND+ADIEYRL+F C+DKLQLGSL+++FT
Sbjct: 297  VDIVREVTMFVFKIKMPSDVRVQLINDMADIEYRLSFGCSDKLQLGSLVASFT 349


>ref|XP_002302226.1| replication factor C 36 kDA family protein [Populus trichocarpa]
            gi|222843952|gb|EEE81499.1| replication factor C 36 kDA
            family protein [Populus trichocarpa]
          Length = 363

 Score =  563 bits (1451), Expect = e-158
 Identities = 288/353 (81%), Positives = 315/353 (89%), Gaps = 5/353 (1%)
 Frame = -2

Query: 1213 MAEEITEVMEIDSYEEHE---KQRKGKRATVASTEP--KATPWVEKYRPQSLADVAAHRD 1049
            MAE I  +M+ID  E      K  KGK+  V +T P  KATPWVEKYRPQSLADVAAHRD
Sbjct: 1    MAEAIA-LMDIDEEENQNHLSKPNKGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRD 59

Query: 1048 IVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDV 869
            I+DTIDRLTSEN+LPHLLLYGPPGTGKTSTILAVARKLYGAQ+HNMILELNASDDRGIDV
Sbjct: 60   IIDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDV 119

Query: 868  VRQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 689
            VR+QIQDFASTQSFSFG K+ VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH
Sbjct: 120  VRKQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 179

Query: 688  VNKIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKAL 509
            VNKIIPALQSRCTRFRFAPLD  HV ERLKHVI+AEGL+V +SGL AL  LSNGDMRKAL
Sbjct: 180  VNKIIPALQSRCTRFRFAPLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKAL 239

Query: 508  NILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLAL 329
            NILQSTHMASQ ITEE VYLCTGNP+P+D++QI++WLLNESFA  +  IS+IK RKGLAL
Sbjct: 240  NILQSTHMASQQITEETVYLCTGNPLPQDVQQITHWLLNESFAESYKRISEIKTRKGLAL 299

Query: 328  VDIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VDIVREVTMF+F+IKM SD+RV LINDLADIEYRL+F CNDKLQLGSL+++FT
Sbjct: 300  VDIVREVTMFVFKIKMQSDIRVPLINDLADIEYRLSFGCNDKLQLGSLIASFT 352


>gb|EXB60106.1| Replication factor C subunit 5 [Morus notabilis]
            gi|587990838|gb|EXC75062.1| Replication factor C subunit
            5 [Morus notabilis]
          Length = 365

 Score =  562 bits (1448), Expect = e-157
 Identities = 287/353 (81%), Positives = 316/353 (89%), Gaps = 8/353 (2%)
 Frame = -2

Query: 1204 EITEVMEIDSYEEHEKQRKGK-----RATVASTEPKATPWVEKYRPQSLADVAAHRDIVD 1040
            E+  +M+ID  +++   R  K     ++  A ++ KATPWVEKYRPQSLADVAAHRDI+D
Sbjct: 3    EVVSLMDIDD-DDNAGDRSAKPINKGKSGAAPSDGKATPWVEKYRPQSLADVAAHRDIID 61

Query: 1039 TIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQ 860
            TIDRLTSEN+LPHLLLYGPPGTGKTSTILAVARKLYGAQ+HNMILELNASDDRGIDVVRQ
Sbjct: 62   TIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQ 121

Query: 859  QIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 680
            QIQDFASTQSFSFGVK+ VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRF+LICN+VNK
Sbjct: 122  QIQDFASTQSFSFGVKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFSLICNNVNK 181

Query: 679  IIPALQSRCTRFRFAPLDATHVTERLKHVIDAEG---LNVDDSGLTALVRLSNGDMRKAL 509
            IIPALQSRCTRFRFAPLD  HV ERLKHVI+AEG   L+V +SGLTA VRLSNGDMRKAL
Sbjct: 182  IIPALQSRCTRFRFAPLDPVHVNERLKHVIEAEGQVLLDVSESGLTAFVRLSNGDMRKAL 241

Query: 508  NILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLAL 329
            NILQSTHMAS+ ITEE VYLCTGNP+PKDIEQISYWLLNESFA  F  IS++K RKGLAL
Sbjct: 242  NILQSTHMASKKITEEEVYLCTGNPLPKDIEQISYWLLNESFAESFKQISNMKGRKGLAL 301

Query: 328  VDIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VDIVREVTMF+F+IKMPSD RV LINDLADIEYRL+F CNDKLQLGSL+++FT
Sbjct: 302  VDIVREVTMFVFKIKMPSDARVQLINDLADIEYRLSFGCNDKLQLGSLIASFT 354


>ref|XP_003526636.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
          Length = 361

 Score =  560 bits (1443), Expect = e-157
 Identities = 284/348 (81%), Positives = 306/348 (87%), Gaps = 3/348 (0%)
 Frame = -2

Query: 1204 EITEVMEIDSYEEHEKQRKGKRATVASTEP---KATPWVEKYRPQSLADVAAHRDIVDTI 1034
            + T  M+ID +       KGK    A   P   KA PWVEKYRPQSL DVAAHRDIVDTI
Sbjct: 3    QTTHPMDIDDHTYTASPDKGKSVVFAGNPPAAGKAIPWVEKYRPQSLDDVAAHRDIVDTI 62

Query: 1033 DRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQI 854
            DRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG+Q+ NMILELNASDDRGIDVVRQQI
Sbjct: 63   DRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQI 122

Query: 853  QDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKII 674
            QDFASTQS SFGVKS VKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICNHVNKII
Sbjct: 123  QDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKII 182

Query: 673  PALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQS 494
            PALQSRCTRFRFAPLDA HVTERLKHVI AEGL+V+DSGL A VRLSNGDMRKALNILQS
Sbjct: 183  PALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAAFVRLSNGDMRKALNILQS 242

Query: 493  THMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDIVR 314
            THMASQ ITEEAVYLCTGNP+PKDIE ISYWLLNE FA  F  I ++K RKGLAL+DIVR
Sbjct: 243  THMASQQITEEAVYLCTGNPLPKDIELISYWLLNEQFADSFKRIDEMKTRKGLALIDIVR 302

Query: 313  EVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            EVTMF+F+IKMPS VRV L+NDLADIEYRL+F CNDKLQLGS++++FT
Sbjct: 303  EVTMFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFT 350


>ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
            gi|449499057|ref|XP_004160708.1| PREDICTED: replication
            factor C subunit 5-like [Cucumis sativus]
          Length = 363

 Score =  558 bits (1438), Expect = e-156
 Identities = 284/350 (81%), Positives = 310/350 (88%), Gaps = 5/350 (1%)
 Frame = -2

Query: 1204 EITEVMEIDS---YEEHEKQRKGKRAT--VASTEPKATPWVEKYRPQSLADVAAHRDIVD 1040
            E+  VM+ID      E EK  KGK      A+ E KA PWVEK+RP+SLADVAAHRDIVD
Sbjct: 3    EVISVMDIDDDNGNNEAEKAVKGKNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVD 62

Query: 1039 TIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQ 860
            TID+LTSEN+LPHLLLYGPPGTGKTSTILAVARKLYG  +HNMILELNASDDRGIDVVRQ
Sbjct: 63   TIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQ 122

Query: 859  QIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 680
            QIQDFASTQSFSFG K+ VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK
Sbjct: 123  QIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 182

Query: 679  IIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNIL 500
            IIPALQSRCTRFRFAPLD  HVTERL++VI+AE L+V + GL ALVRL  GDMRKALNIL
Sbjct: 183  IIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNIL 242

Query: 499  QSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDI 320
            QSTHMASQHITEEAVYLCTGNPMPKDIEQIS+WLLNE F+  F  IS+IK RKGLALVDI
Sbjct: 243  QSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDI 302

Query: 319  VREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VREVT+F+F+I+MPS++RV LINDLADIEYR+TF CNDKLQLGSL+S+FT
Sbjct: 303  VREVTLFVFKIEMPSNIRVQLINDLADIEYRMTFGCNDKLQLGSLISSFT 352


>ref|XP_004502480.1| PREDICTED: replication factor C subunit 5-like isoform X1 [Cicer
            arietinum]
          Length = 363

 Score =  557 bits (1436), Expect = e-156
 Identities = 282/352 (80%), Positives = 309/352 (87%), Gaps = 4/352 (1%)
 Frame = -2

Query: 1213 MAEEITEVMEIDSYEEHEKQRKGKRATVASTEP----KATPWVEKYRPQSLADVAAHRDI 1046
            MAEE T  M+ID            +  +++  P    K+T WVEKYRPQSL DVAAHRDI
Sbjct: 1    MAEEGTYPMDIDQTNSFSSNPDKGKTVISAPNPSIGGKSTLWVEKYRPQSLDDVAAHRDI 60

Query: 1045 VDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVV 866
            VDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYGAQ+HNMILELNASDDRGIDVV
Sbjct: 61   VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 120

Query: 865  RQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV 686
            RQQIQDFASTQS SFGVK  VKL+LLDEADAMTKDAQFALRRVIEKYTK+TRFALICNHV
Sbjct: 121  RQQIQDFASTQSLSFGVKPSVKLILLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHV 180

Query: 685  NKIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALN 506
            NKII ALQSRCTRFRFAPLDA HVTERLKHVI AEGL+V DSGL+ALVRLSNGDMRKALN
Sbjct: 181  NKIIQALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVQDSGLSALVRLSNGDMRKALN 240

Query: 505  ILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALV 326
            ILQSTHMASQ ITEEAVYLCTGNP+PKDIEQISYWLLNE ++  +  I DIK RKGLAL+
Sbjct: 241  ILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSDSYKRIHDIKTRKGLALI 300

Query: 325  DIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            DIVREVTMF+F+IKMP+ VRV L+NDLADIEYRL+F CNDKLQLGS++++FT
Sbjct: 301  DIVREVTMFVFKIKMPAAVRVQLVNDLADIEYRLSFGCNDKLQLGSVIASFT 352


>ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
            gi|75132556|sp|Q6YZ54.1|RFC3_ORYSJ RecName:
            Full=Replication factor C subunit 3; Short=OsRFC3;
            AltName: Full=Activator 1 subunit 3
            gi|46805779|dbj|BAD17147.1| putative replication factor C
            36kDa subunit [Oryza sativa Japonica Group]
            gi|46806135|dbj|BAD17365.1| putative replication factor C
            36kDa subunit [Oryza sativa Japonica Group]
            gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa
            Japonica Group] gi|215697717|dbj|BAG91711.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218191668|gb|EEC74095.1| hypothetical protein
            OsI_09136 [Oryza sativa Indica Group]
          Length = 361

 Score =  556 bits (1432), Expect = e-156
 Identities = 275/327 (84%), Positives = 303/327 (92%)
 Frame = -2

Query: 1150 KGKRATVASTEPKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTG 971
            KGK    ++   +A PWVEKYRPQSL DVAAHRDIVDTIDRLT+EN+LPHLLLYGPPGTG
Sbjct: 24   KGKAPLSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTG 83

Query: 970  KTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSPVKLVL 791
            KTSTILAVARKLYG+Q+ NMILELNASD+RGIDVVRQQIQDFAS +S SFG K  VK+VL
Sbjct: 84   KTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVL 143

Query: 790  LDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDATHVT 611
            LDEADAMTKDAQFALRRVIEK+T++TRFALICNHVNKIIPALQSRCTRFRFAPLD THV 
Sbjct: 144  LDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVR 203

Query: 610  ERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPM 431
            ERLKH+I +EGL+VDD GLTALVRLSNGDMRKALNILQSTHMAS+ ITEEAVYLCTGNPM
Sbjct: 204  ERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPM 263

Query: 430  PKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDIVREVTMFIFRIKMPSDVRVHLIN 251
            PKDIEQI+YWLLNESF+T F  ISD+KMRKGLALVDI+REVTMF+F+I+MPSDVR+ LIN
Sbjct: 264  PKDIEQIAYWLLNESFSTSFKCISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRIKLIN 323

Query: 250  DLADIEYRLTFACNDKLQLGSLLSTFT 170
            DLADIEYRL+FACNDKLQLG+L+STFT
Sbjct: 324  DLADIEYRLSFACNDKLQLGALISTFT 350


>ref|XP_003523440.1| PREDICTED: replication factor C subunit 3-like [Glycine max]
          Length = 363

 Score =  553 bits (1425), Expect = e-155
 Identities = 283/350 (80%), Positives = 309/350 (88%), Gaps = 5/350 (1%)
 Frame = -2

Query: 1204 EITEVMEIDSYEEHEKQRKGK-RATVASTEP----KATPWVEKYRPQSLADVAAHRDIVD 1040
            E    M+IDS +     R  K ++ V ++ P    KA PWVEKYRP SL DVAAHRDIVD
Sbjct: 3    ETNHHMDIDSDDHTYTARPDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVD 62

Query: 1039 TIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQ 860
            TIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYG+Q+ NMILELNASDDRGIDVVRQ
Sbjct: 63   TIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQ 122

Query: 859  QIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNK 680
            QIQDFASTQS SFGVKS VKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICNHVNK
Sbjct: 123  QIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNK 182

Query: 679  IIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNIL 500
            IIPALQSRCTRFRFAPLDA HVTERLKHVI AEGL+V+DSGL ALVRLSNGDMRKALNIL
Sbjct: 183  IIPALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNIL 242

Query: 499  QSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDI 320
            QSTHMASQ ITEE VYLCTGNP+PKDIEQISYWLLNE FA  F  I ++K RKGLALVDI
Sbjct: 243  QSTHMASQQITEETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDEMKTRKGLALVDI 302

Query: 319  VREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            VREVT+F+F+IKMPS VRV L+NDLADIEYRL+F CNDKLQLGS++++F+
Sbjct: 303  VREVTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFS 352


>ref|XP_006856708.1| hypothetical protein AMTR_s00054p00174840 [Amborella trichopoda]
            gi|548860608|gb|ERN18175.1| hypothetical protein
            AMTR_s00054p00174840 [Amborella trichopoda]
          Length = 359

 Score =  553 bits (1424), Expect = e-155
 Identities = 279/344 (81%), Positives = 305/344 (88%), Gaps = 4/344 (1%)
 Frame = -2

Query: 1189 MEIDSYEEHEKQR----KGKRATVASTEPKATPWVEKYRPQSLADVAAHRDIVDTIDRLT 1022
            M++D   E + +     KGK        PKATPWVEKYRPQSLADVAAH+DI+DT+DRLT
Sbjct: 5    MDVDVEREQDMRYLQTGKGKVVEREQLLPKATPWVEKYRPQSLADVAAHKDIIDTVDRLT 64

Query: 1021 SENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQIQDFA 842
            +EN+LPHLLLYGPPGTGKTST+LAVARKLYG    NMILELNASDDRGIDVVRQQIQDFA
Sbjct: 65   NENRLPHLLLYGPPGTGKTSTVLAVARKLYGGNLRNMILELNASDDRGIDVVRQQIQDFA 124

Query: 841  STQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQ 662
            STQSFSFG KS VKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICNHVNKIIPALQ
Sbjct: 125  STQSFSFGAKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQ 184

Query: 661  SRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQSTHMA 482
            SRCTRFRFAPLDA HV ERL++VI AEGL+VD+SGL+A+VRLSNGDMRKALNILQSTHMA
Sbjct: 185  SRCTRFRFAPLDAAHVRERLQYVIKAEGLDVDESGLSAVVRLSNGDMRKALNILQSTHMA 244

Query: 481  SQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDIVREVTM 302
            SQH++E+AVYLCTGNPMPKD+EQIS WLLNE FAT +  ISD+K  KGLALVDIVREVTM
Sbjct: 245  SQHVSEKAVYLCTGNPMPKDVEQISNWLLNEDFATSYKYISDMKTTKGLALVDIVREVTM 304

Query: 301  FIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            FIF IKMPS VRV LINDLADIEYRL+F CNDKLQLGSL+ +FT
Sbjct: 305  FIFMIKMPSTVRVQLINDLADIEYRLSFGCNDKLQLGSLIGSFT 348


>ref|XP_004502481.1| PREDICTED: replication factor C subunit 5-like isoform X2 [Cicer
            arietinum]
          Length = 364

 Score =  553 bits (1424), Expect = e-155
 Identities = 282/353 (79%), Positives = 309/353 (87%), Gaps = 5/353 (1%)
 Frame = -2

Query: 1213 MAEEITEVMEIDSYEEHEKQRKGKRATVASTEP----KATPWVEKYRPQSLADVAAHRDI 1046
            MAEE T  M+ID            +  +++  P    K+T WVEKYRPQSL DVAAHRDI
Sbjct: 1    MAEEGTYPMDIDQTNSFSSNPDKGKTVISAPNPSIGGKSTLWVEKYRPQSLDDVAAHRDI 60

Query: 1045 VDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVV 866
            VDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYGAQ+HNMILELNASDDRGIDVV
Sbjct: 61   VDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVV 120

Query: 865  RQQIQDFASTQSFSFG-VKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNH 689
            RQQIQDFASTQS SFG VK  VKL+LLDEADAMTKDAQFALRRVIEKYTK+TRFALICNH
Sbjct: 121  RQQIQDFASTQSLSFGFVKPSVKLILLDEADAMTKDAQFALRRVIEKYTKSTRFALICNH 180

Query: 688  VNKIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKAL 509
            VNKII ALQSRCTRFRFAPLDA HVTERLKHVI AEGL+V DSGL+ALVRLSNGDMRKAL
Sbjct: 181  VNKIIQALQSRCTRFRFAPLDAVHVTERLKHVIKAEGLDVQDSGLSALVRLSNGDMRKAL 240

Query: 508  NILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLAL 329
            NILQSTHMASQ ITEEAVYLCTGNP+PKDIEQISYWLLNE ++  +  I DIK RKGLAL
Sbjct: 241  NILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSDSYKRIHDIKTRKGLAL 300

Query: 328  VDIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            +DIVREVTMF+F+IKMP+ VRV L+NDLADIEYRL+F CNDKLQLGS++++FT
Sbjct: 301  IDIVREVTMFVFKIKMPAAVRVQLVNDLADIEYRLSFGCNDKLQLGSVIASFT 353


>ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
            gi|355491087|gb|AES72290.1| Replication factor C subunit
            [Medicago truncatula]
          Length = 355

 Score =  552 bits (1423), Expect = e-154
 Identities = 286/351 (81%), Positives = 309/351 (88%), Gaps = 3/351 (0%)
 Frame = -2

Query: 1213 MAEEITEVMEIDSYEEHEKQRKGKRATVASTEP---KATPWVEKYRPQSLADVAAHRDIV 1043
            MAEE T  M+ID  +      KGK    A       KA+ WVEKYRPQSL DVAAHRDIV
Sbjct: 1    MAEE-TYAMDIDVTD------KGKTVIAAGNPSFGGKASLWVEKYRPQSLDDVAAHRDIV 53

Query: 1042 DTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVR 863
            DTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKLYGAQ+HNMILELNASDDRGIDVVR
Sbjct: 54   DTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVR 113

Query: 862  QQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVN 683
            QQIQDFASTQS SFGVK  VKLVLLDEADAMTKDAQFALRRVIEKYTK+TRFALICNHVN
Sbjct: 114  QQIQDFASTQSLSFGVKPSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVN 173

Query: 682  KIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNI 503
            KIIPALQSRCTRFRFAPLDA HVTERLKHVI+AE L+V DSGL+ALVRLSNGDMRKALNI
Sbjct: 174  KIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERLDVQDSGLSALVRLSNGDMRKALNI 233

Query: 502  LQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVD 323
            LQSTHMASQ ITEEAVYLCTGNP+PKDIEQISYWLLNE ++  F  I D+K RKGLAL+D
Sbjct: 234  LQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQYSESFKRIYDMKTRKGLALID 293

Query: 322  IVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            IVREVTMF+F+I MPS VRV L+NDLADIEYRL+F CNDKLQLGS++++FT
Sbjct: 294  IVREVTMFVFKINMPSAVRVQLVNDLADIEYRLSFGCNDKLQLGSVVASFT 344


>dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
          Length = 367

 Score =  551 bits (1419), Expect = e-154
 Identities = 275/333 (82%), Positives = 304/333 (91%), Gaps = 6/333 (1%)
 Frame = -2

Query: 1150 KGKRATVASTEPKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTG 971
            KGK    ++   +A PWVEKYRPQSL DVAAHRDIVDTIDRLT+EN+LPHLLLYGPPGTG
Sbjct: 24   KGKAPLSSTPGGRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTG 83

Query: 970  KTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSPVKLVL 791
            KTSTILAVARKLYG+Q+ NMILELNASD+RGIDVVRQQIQDFAS +S SFG K  VK+VL
Sbjct: 84   KTSTILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQSVKMVL 143

Query: 790  LDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDATHVT 611
            LDEADAMTKDAQFALRRVIEK+T++TRFALICNHVNKIIPALQSRCTRFRFAPLD THV 
Sbjct: 144  LDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVR 203

Query: 610  ERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPM 431
            ERLKH+I +EGL+VDD GLTALVRLSNGDMRKALNILQSTHMAS+ ITEEAVYLCTGNPM
Sbjct: 204  ERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTHMASKQITEEAVYLCTGNPM 263

Query: 430  PKDIEQISYWLLNESFATGF------SNISDIKMRKGLALVDIVREVTMFIFRIKMPSDV 269
            PKDIEQI+YWLLNESF+T F       +ISD+KMRKGLALVDI+REVTMF+F+I+MPSDV
Sbjct: 264  PKDIEQIAYWLLNESFSTSFKCILNYQSISDMKMRKGLALVDIIREVTMFVFKIQMPSDV 323

Query: 268  RVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            R+ LINDLADIEYRL+FACNDKLQLG+L+STFT
Sbjct: 324  RIKLINDLADIEYRLSFACNDKLQLGALISTFT 356


>dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
            gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum
            vulgare subsp. vulgare]
          Length = 359

 Score =  550 bits (1418), Expect = e-154
 Identities = 271/327 (82%), Positives = 302/327 (92%)
 Frame = -2

Query: 1150 KGKRATVASTEPKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTG 971
            KGK    A+   K++PWVEKYRPQSLADVAAHRDIVDTIDRLT EN+LPHLLLYGPPGTG
Sbjct: 22   KGKAPLSAAAAVKSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYGPPGTG 81

Query: 970  KTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSPVKLVL 791
            KTSTILAVARK+YG+Q+ NMILELNASD+RGI VVRQQIQDFAS  S SFG K  VKLVL
Sbjct: 82   KTSTILAVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAKPAVKLVL 141

Query: 790  LDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDATHVT 611
            LDEADAMTKDAQFALRRVIEKYT++TRFALICNHVNKIIPALQSRCTRFRFAPLD +HV+
Sbjct: 142  LDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVS 201

Query: 610  ERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPM 431
            ERL+H+I +EGL+VD+ GL+ALVRLSNGDMRK+LNILQSTHMASQ ITEEAVYLCTGNPM
Sbjct: 202  ERLRHIIKSEGLDVDEGGLSALVRLSNGDMRKSLNILQSTHMASQQITEEAVYLCTGNPM 261

Query: 430  PKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDIVREVTMFIFRIKMPSDVRVHLIN 251
            PKDIEQI++WLLNE F+T F +I+D+KMRKGLAL+DI+REVTMF+F+IKMPS VRV LIN
Sbjct: 262  PKDIEQIAFWLLNEPFSTSFKHIADMKMRKGLALIDIIREVTMFVFKIKMPSSVRVKLIN 321

Query: 250  DLADIEYRLTFACNDKLQLGSLLSTFT 170
            DLADIEYRLTFACNDKLQLG+L+STFT
Sbjct: 322  DLADIEYRLTFACNDKLQLGALISTFT 348


>ref|XP_004242038.1| PREDICTED: replication factor C subunit 5-like [Solanum lycopersicum]
          Length = 357

 Score =  550 bits (1417), Expect = e-154
 Identities = 278/348 (79%), Positives = 311/348 (89%)
 Frame = -2

Query: 1213 MAEEITEVMEIDSYEEHEKQRKGKRATVASTEPKATPWVEKYRPQSLADVAAHRDIVDTI 1034
            MAE I+  M+ID  +   K  KGK   V++TEPK+ PWVEK+RPQSL+DVAAHRDIV+TI
Sbjct: 1    MAETISS-MDIDDDKIDTKPSKGKNI-VSNTEPKSVPWVEKFRPQSLSDVAAHRDIVETI 58

Query: 1033 DRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQI 854
            DRL S N+LPHLLLYGPPGTGKTSTILA+ARKLYG+Q  NM+LELNASDDRGIDVVRQQI
Sbjct: 59   DRLASSNRLPHLLLYGPPGTGKTSTILALARKLYGSQMQNMVLELNASDDRGIDVVRQQI 118

Query: 853  QDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKII 674
            QDFASTQS SFG KS VKLVLLDEADAMTKDAQFALRRVIE+YT+NTRFALICN+VNK+I
Sbjct: 119  QDFASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIERYTRNTRFALICNNVNKVI 178

Query: 673  PALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQS 494
            PALQSRCTRFRFAPLDA HV+ERLKHV++AE L+V + GL ALVRLSNGDMRKALNILQS
Sbjct: 179  PALQSRCTRFRFAPLDAVHVSERLKHVVEAEQLDVPEGGLKALVRLSNGDMRKALNILQS 238

Query: 493  THMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDIVR 314
            THMASQ I+E+AVYLCTGNP+PKDIEQISYWLLNE FA     IS+IK RKGLALVDIVR
Sbjct: 239  THMASQQISEDAVYLCTGNPLPKDIEQISYWLLNEPFAISCKRISEIKTRKGLALVDIVR 298

Query: 313  EVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            EVTMF+F+IKMP++VRV LIN++ADIEYRLTF CNDKLQLGSL+S FT
Sbjct: 299  EVTMFVFKIKMPANVRVQLINEMADIEYRLTFGCNDKLQLGSLISAFT 346


>ref|NP_001136580.1| replication factor C subunit 3 [Zea mays] gi|194696262|gb|ACF82215.1|
            unknown [Zea mays] gi|413939151|gb|AFW73702.1|
            replication factor C subunit 3 [Zea mays]
          Length = 362

 Score =  550 bits (1416), Expect = e-154
 Identities = 271/315 (86%), Positives = 297/315 (94%)
 Frame = -2

Query: 1114 KATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTGKTSTILAVARKL 935
            +A PWVEKYRPQSLADVAAHRDIVDTIDRLT+EN+LPHLLLYGPPGTGKTSTILAVARKL
Sbjct: 37   RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96

Query: 934  YGAQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQ 755
            YG+Q+ NMILELNASD+RGIDVVRQQIQDFA  +S SFG +  VKLVLLDEADAMTKDAQ
Sbjct: 97   YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQ 156

Query: 754  FALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDATHVTERLKHVIDAEGL 575
            FALRRVIEKYT++TRFALICNHVNKIIPALQSRCTRFRFAPLD +HV ERL+H+I +EGL
Sbjct: 157  FALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGL 216

Query: 574  NVDDSGLTALVRLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISYWLL 395
            +VDD GLTALVRLSNGDMRKALNILQSTHMASQ ITEEAVYLCTGNPMPKDIEQI++WLL
Sbjct: 217  SVDDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPMPKDIEQIAFWLL 276

Query: 394  NESFATGFSNISDIKMRKGLALVDIVREVTMFIFRIKMPSDVRVHLINDLADIEYRLTFA 215
            NE F+T F  ISD+KMRKGLALVDI+REVTMF+F+I+MPSDVRV LINDLADIEYRL+FA
Sbjct: 277  NEPFSTSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLINDLADIEYRLSFA 336

Query: 214  CNDKLQLGSLLSTFT 170
            CNDKLQLG+L+STFT
Sbjct: 337  CNDKLQLGALISTFT 351


>ref|XP_006365532.1| PREDICTED: replication factor C subunit 3-like [Solanum tuberosum]
          Length = 357

 Score =  549 bits (1415), Expect = e-154
 Identities = 276/348 (79%), Positives = 310/348 (89%)
 Frame = -2

Query: 1213 MAEEITEVMEIDSYEEHEKQRKGKRATVASTEPKATPWVEKYRPQSLADVAAHRDIVDTI 1034
            MAE I+ +M+ID  +   K   GK   V++TEP++ PWVEK+RPQSL+DVAAHRDIV+TI
Sbjct: 1    MAETIS-LMDIDDDKIDTKPNNGKNI-VSNTEPRSVPWVEKFRPQSLSDVAAHRDIVETI 58

Query: 1033 DRLTSENKLPHLLLYGPPGTGKTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQI 854
            DRL S N+LPHLLLYGPPGTGKTSTILA+ARKLYG+Q HNM+LELNASDDRGIDVVRQQI
Sbjct: 59   DRLASSNRLPHLLLYGPPGTGKTSTILALARKLYGSQMHNMVLELNASDDRGIDVVRQQI 118

Query: 853  QDFASTQSFSFGVKSPVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKII 674
            QDFASTQS SFG KS VKLVLLDEADAMTKDAQFALRRVIEKYT+NTRFAL+CN+VNK+I
Sbjct: 119  QDFASTQSISFGAKSAVKLVLLDEADAMTKDAQFALRRVIEKYTRNTRFALVCNNVNKVI 178

Query: 673  PALQSRCTRFRFAPLDATHVTERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQS 494
            PALQSRCTRFRFAPLDA HV+ERLKHV++AE L+V + GL ALVRLSNGDMRKALNILQS
Sbjct: 179  PALQSRCTRFRFAPLDAVHVSERLKHVVEAEQLDVPEGGLKALVRLSNGDMRKALNILQS 238

Query: 493  THMASQHITEEAVYLCTGNPMPKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDIVR 314
            THMASQ I+E+AVYLCTGNP+PKDIEQISYWLLNE F      IS+IK RKGLALVDIVR
Sbjct: 239  THMASQQISEDAVYLCTGNPLPKDIEQISYWLLNEPFTISCKRISEIKTRKGLALVDIVR 298

Query: 313  EVTMFIFRIKMPSDVRVHLINDLADIEYRLTFACNDKLQLGSLLSTFT 170
            EVTMF+F+IKMP+ VRV LIN++ADIEYRLTF CNDKLQLGSL+S FT
Sbjct: 299  EVTMFVFKIKMPATVRVQLINEMADIEYRLTFGCNDKLQLGSLISAFT 346


>gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
          Length = 362

 Score =  549 bits (1414), Expect = e-153
 Identities = 274/327 (83%), Positives = 302/327 (92%)
 Frame = -2

Query: 1150 KGKRATVASTEPKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENKLPHLLLYGPPGTG 971
            KGK   + S   +A PWVEKYRPQSLADVAAHRDIVDTIDRLT+EN+LPHLLLYGPPGTG
Sbjct: 27   KGK--ALLSAGGRAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTG 84

Query: 970  KTSTILAVARKLYGAQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGVKSPVKLVL 791
            KTSTILAVARKLYG+Q+ NMILELNASD+RGIDVVRQQIQDFA  +S SFG +  VKLVL
Sbjct: 85   KTSTILAVARKLYGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGARPSVKLVL 144

Query: 790  LDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDATHVT 611
            LDEADAMTKDAQFALRRVIEKYT++TRFALICNHVNKIIPALQSRCTRFRFAPLD +HV 
Sbjct: 145  LDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVR 204

Query: 610  ERLKHVIDAEGLNVDDSGLTALVRLSNGDMRKALNILQSTHMASQHITEEAVYLCTGNPM 431
            ERL+H+I +EGL+VDD GLTALVRLSNGDMRKALNILQSTHMASQ ITEEAVYLCTGNPM
Sbjct: 205  ERLQHIIKSEGLSVDDGGLTALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPM 264

Query: 430  PKDIEQISYWLLNESFATGFSNISDIKMRKGLALVDIVREVTMFIFRIKMPSDVRVHLIN 251
            PKDIEQI++WLLNE F+T F  ISD+KMRKGLALVDI+REVTMF+F+I+MPSDVRV LIN
Sbjct: 265  PKDIEQIAFWLLNEPFSTSFKYISDMKMRKGLALVDIIREVTMFVFKIQMPSDVRVKLIN 324

Query: 250  DLADIEYRLTFACNDKLQLGSLLSTFT 170
            +LADIEYRL+FACNDKLQLG+L+STFT
Sbjct: 325  NLADIEYRLSFACNDKLQLGALISTFT 351